EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000012426 (Gene tree)
Gene ID: 101562045
Gene Symbol: UPF1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 25932 bases
Position: chrJH651797.1:649774-675705
Accession: 101562045
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000016858	UPF1_Zn_bind	PF09416.10	6.2e-75	1	1
ENSODEP00000016858	ResIII	PF04851.15	2.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000017071	UPF1-201	3333	XM_004646848	ENSODEP00000016858	1110 (aa)	XP_004646906	-

Gene Model

Click here to download ENSODEG00000012426's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000012426's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000012426	UPF1	100	97.874	ENSG00000005007	UPF1	100	97.874	Homo_sapiens
ENSODEG00000012426	UPF1	100	92.626	ENSAPOG00000010916	-	100	92.716	Acanthochromis_polyacanthus
ENSODEG00000012426	UPF1	100	91.390	ENSAPOG00000023773	upf1	100	91.659	Acanthochromis_polyacanthus
ENSODEG00000012426	UPF1	100	98.133	ENSAMEG00000011474	UPF1	100	98.133	Ailuropoda_melanoleuca
ENSODEG00000012426	UPF1	93	93.726	ENSACIG00000010985	-	100	93.822	Amphilophus_citrinellus
ENSODEG00000012426	UPF1	100	91.219	ENSACIG00000019949	upf1	100	91.749	Amphilophus_citrinellus
ENSODEG00000012426	UPF1	100	90.901	ENSAOCG00000018519	upf1	100	91.474	Amphiprion_ocellaris
ENSODEG00000012426	UPF1	100	92.716	ENSAOCG00000006352	-	100	92.806	Amphiprion_ocellaris
ENSODEG00000012426	UPF1	100	92.716	ENSAPEG00000006292	-	100	92.806	Amphiprion_percula
ENSODEG00000012426	UPF1	100	90.901	ENSAPEG00000016344	upf1	100	91.474	Amphiprion_percula
ENSODEG00000012426	UPF1	100	90.071	ENSATEG00000017867	upf1	100	90.869	Anabas_testudineus
ENSODEG00000012426	UPF1	100	92.716	ENSATEG00000016606	-	100	92.806	Anabas_testudineus
ENSODEG00000012426	UPF1	95	98.097	ENSAPLG00000009175	UPF1	99	98.097	Anas_platyrhynchos
ENSODEG00000012426	UPF1	96	96.565	ENSANAG00000024107	UPF1	97	96.565	Aotus_nancymaae
ENSODEG00000012426	UPF1	100	92.619	ENSACLG00000022630	-	100	92.619	Astatotilapia_calliptera
ENSODEG00000012426	UPF1	100	90.950	ENSACLG00000007181	upf1	100	91.480	Astatotilapia_calliptera
ENSODEG00000012426	UPF1	100	93.255	ENSAMXG00000042187	upf1	100	93.795	Astyanax_mexicanus
ENSODEG00000012426	UPF1	100	97.693	ENSBTAG00000020922	UPF1	100	97.693	Bos_taurus
ENSODEG00000012426	UPF1	89	51.091	WBGene00004880	smg-2	99	48.413	Caenorhabditis_elegans
ENSODEG00000012426	UPF1	100	97.874	ENSCJAG00000019627	UPF1	100	97.874	Callithrix_jacchus
ENSODEG00000012426	UPF1	100	97.699	ENSCAFG00000014578	UPF1	100	97.699	Canis_familiaris
ENSODEG00000012426	UPF1	100	96.726	ENSCAFG00020012347	UPF1	100	96.726	Canis_lupus_dingo
ENSODEG00000012426	UPF1	100	97.780	ENSCHIG00000011018	UPF1	100	97.780	Capra_hircus
ENSODEG00000012426	UPF1	95	99.335	ENSTSYG00000008877	UPF1	99	98.319	Carlito_syrichta
ENSODEG00000012426	UPF1	95	98.769	ENSCAPG00000005758	UPF1	96	98.769	Cavia_aperea
ENSODEG00000012426	UPF1	100	98.018	ENSCPOG00000025463	UPF1	100	98.018	Cavia_porcellus
ENSODEG00000012426	UPF1	100	98.483	ENSCCAG00000032175	UPF1	100	98.483	Cebus_capucinus
ENSODEG00000012426	UPF1	95	99.056	ENSCATG00000040306	UPF1	98	99.056	Cercocebus_atys
ENSODEG00000012426	UPF1	95	99.905	ENSCLAG00000004037	UPF1	100	99.905	Chinchilla_lanigera
ENSODEG00000012426	UPF1	100	96.900	ENSCSAG00000005276	UPF1	100	96.900	Chlorocebus_sabaeus
ENSODEG00000012426	UPF1	100	95.996	ENSCPBG00000012513	UPF1	100	95.996	Chrysemys_picta_bellii
ENSODEG00000012426	UPF1	77	78.613	ENSCING00000021399	-	99	78.728	Ciona_intestinalis
ENSODEG00000012426	UPF1	99	71.950	ENSCSAVG00000006533	-	99	71.950	Ciona_savignyi
ENSODEG00000012426	UPF1	96	98.689	ENSCANG00000029819	UPF1	99	98.689	Colobus_angolensis_palliatus
ENSODEG00000012426	UPF1	100	96.886	ENSCGRG00001021067	Upf1	100	96.886	Cricetulus_griseus_chok1gshd
ENSODEG00000012426	UPF1	96	98.404	ENSCGRG00000013480	Upf1	99	98.404	Cricetulus_griseus_crigri
ENSODEG00000012426	UPF1	100	86.601	ENSCSEG00000017239	upf1	100	86.781	Cynoglossus_semilaevis
ENSODEG00000012426	UPF1	100	92.709	ENSCSEG00000016159	-	100	92.709	Cynoglossus_semilaevis
ENSODEG00000012426	UPF1	100	92.716	ENSCVAG00000010561	upf1	100	92.716	Cyprinodon_variegatus
ENSODEG00000012426	UPF1	100	93.076	ENSDARG00000016302	upf1	100	93.615	Danio_rerio
ENSODEG00000012426	UPF1	95	95.966	ENSDORG00000009984	Upf1	96	95.966	Dipodomys_ordii
ENSODEG00000012426	UPF1	85	71.324	FBgn0030354	Upf1	84	67.761	Drosophila_melanogaster
ENSODEG00000012426	UPF1	55	85.390	ENSEBUG00000010069	upf1	96	84.903	Eptatretus_burgeri
ENSODEG00000012426	UPF1	100	96.894	ENSEASG00005006549	UPF1	100	96.894	Equus_asinus_asinus
ENSODEG00000012426	UPF1	100	96.894	ENSECAG00000010639	UPF1	100	96.894	Equus_caballus
ENSODEG00000012426	UPF1	100	90.689	ENSELUG00000020917	upf1	100	90.689	Esox_lucius
ENSODEG00000012426	UPF1	100	91.324	ENSELUG00000012916	-	100	91.957	Esox_lucius
ENSODEG00000012426	UPF1	100	97.611	ENSFCAG00000009757	UPF1	100	97.611	Felis_catus
ENSODEG00000012426	UPF1	96	95.829	ENSFALG00000009312	UPF1	98	95.829	Ficedula_albicollis
ENSODEG00000012426	UPF1	95	99.810	ENSFDAG00000014816	UPF1	100	99.810	Fukomys_damarensis
ENSODEG00000012426	UPF1	100	88.287	ENSFHEG00000006428	upf1	100	88.110	Fundulus_heteroclitus
ENSODEG00000012426	UPF1	86	93.466	ENSFHEG00000016276	-	95	93.648	Fundulus_heteroclitus
ENSODEG00000012426	UPF1	100	92.086	ENSGMOG00000007541	upf1	100	92.986	Gadus_morhua
ENSODEG00000012426	UPF1	100	95.922	ENSGALG00000003220	UPF1	100	95.922	Gallus_gallus
ENSODEG00000012426	UPF1	63	94.043	ENSGAFG00000015443	-	88	91.758	Gambusia_affinis
ENSODEG00000012426	UPF1	100	92.079	ENSGAFG00000004831	upf1	100	92.529	Gambusia_affinis
ENSODEG00000012426	UPF1	100	96.515	ENSGAGG00000022217	UPF1	100	96.515	Gopherus_agassizii
ENSODEG00000012426	UPF1	95	98.479	ENSGGOG00000002608	UPF1	99	98.479	Gorilla_gorilla
ENSODEG00000012426	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSODEG00000012426	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSODEG00000012426	UPF1	100	97.874	ENSHGLG00000010900	UPF1	100	97.874	Heterocephalus_glaber_female
ENSODEG00000012426	UPF1	96	96.726	ENSHGLG00100005904	UPF1	98	96.726	Heterocephalus_glaber_male
ENSODEG00000012426	UPF1	100	91.809	ENSHCOG00000008918	upf1	100	92.823	Hippocampus_comes
ENSODEG00000012426	UPF1	100	93.705	ENSIPUG00000005108	UPF1	100	94.155	Ictalurus_punctatus
ENSODEG00000012426	UPF1	100	98.310	ENSSTOG00000009196	UPF1	100	98.310	Ictidomys_tridecemlineatus
ENSODEG00000012426	UPF1	100	97.683	ENSJJAG00000023151	Upf1	100	97.683	Jaculus_jaculus
ENSODEG00000012426	UPF1	100	92.806	ENSKMAG00000004962	upf1	100	92.806	Kryptolebias_marmoratus
ENSODEG00000012426	UPF1	100	92.536	ENSLBEG00000027848	-	100	92.626	Labrus_bergylta
ENSODEG00000012426	UPF1	100	89.609	ENSLBEG00000014862	upf1	100	90.764	Labrus_bergylta
ENSODEG00000012426	UPF1	63	97.131	ENSLACG00000008482	UPF1	100	97.131	Latimeria_chalumnae
ENSODEG00000012426	UPF1	100	95.230	ENSLOCG00000002072	upf1	100	95.230	Lepisosteus_oculatus
ENSODEG00000012426	UPF1	100	97.163	ENSLAFG00000014963	UPF1	100	97.163	Loxodonta_africana
ENSODEG00000012426	UPF1	100	98.483	ENSMFAG00000037748	UPF1	100	98.483	Macaca_fascicularis
ENSODEG00000012426	UPF1	100	98.221	ENSMMUG00000023286	UPF1	100	98.221	Macaca_mulatta
ENSODEG00000012426	UPF1	100	98.483	ENSMNEG00000000046	UPF1	100	98.483	Macaca_nemestrina
ENSODEG00000012426	UPF1	95	99.525	ENSMLEG00000028404	UPF1	100	99.525	Mandrillus_leucophaeus
ENSODEG00000012426	UPF1	100	91.817	ENSMAMG00000006231	-	100	92.356	Mastacembelus_armatus
ENSODEG00000012426	UPF1	100	89.982	ENSMAMG00000006229	upf1	100	90.957	Mastacembelus_armatus
ENSODEG00000012426	UPF1	100	92.619	ENSMZEG00005016386	-	100	92.619	Maylandia_zebra
ENSODEG00000012426	UPF1	100	89.991	ENSMZEG00005003489	upf1	100	91.184	Maylandia_zebra
ENSODEG00000012426	UPF1	95	97.624	ENSMGAG00000004745	UPF1	100	97.624	Meleagris_gallopavo
ENSODEG00000012426	UPF1	95	99.144	ENSMAUG00000011398	Upf1	95	99.144	Mesocricetus_auratus
ENSODEG00000012426	UPF1	100	96.900	ENSMICG00000001659	UPF1	100	96.900	Microcebus_murinus
ENSODEG00000012426	UPF1	100	97.865	ENSMOCG00000005699	Upf1	100	97.865	Microtus_ochrogaster
ENSODEG00000012426	UPF1	95	91.453	ENSMMOG00000007537	-	99	91.794	Mola_mola
ENSODEG00000012426	UPF1	100	90.721	ENSMMOG00000007881	upf1	100	91.179	Mola_mola
ENSODEG00000012426	UPF1	100	96.470	ENSMODG00000003689	UPF1	100	96.470	Monodelphis_domestica
ENSODEG00000012426	UPF1	100	91.406	ENSMALG00000018100	-	100	91.308	Monopterus_albus
ENSODEG00000012426	UPF1	100	90.901	ENSMALG00000000144	upf1	100	91.171	Monopterus_albus
ENSODEG00000012426	UPF1	100	97.598	MGP_CAROLIEiJ_G0031142	Upf1	100	97.598	Mus_caroli
ENSODEG00000012426	UPF1	100	97.598	ENSMUSG00000058301	Upf1	100	97.598	Mus_musculus
ENSODEG00000012426	UPF1	100	97.598	MGP_PahariEiJ_G0021607	Upf1	100	97.598	Mus_pahari
ENSODEG00000012426	UPF1	100	97.598	MGP_SPRETEiJ_G0032260	Upf1	100	97.598	Mus_spretus
ENSODEG00000012426	UPF1	100	96.726	ENSMPUG00000015516	UPF1	100	96.726	Mustela_putorius_furo
ENSODEG00000012426	UPF1	99	96.536	ENSMLUG00000012122	UPF1	99	96.536	Myotis_lucifugus
ENSODEG00000012426	UPF1	100	97.516	ENSNGAG00000024107	Upf1	100	97.516	Nannospalax_galili
ENSODEG00000012426	UPF1	100	90.280	ENSNBRG00000022069	-	100	92.788	Neolamprologus_brichardi
ENSODEG00000012426	UPF1	100	89.247	ENSNBRG00000000670	upf1	100	89.776	Neolamprologus_brichardi
ENSODEG00000012426	UPF1	95	93.726	ENSNLEG00000006062	UPF1	100	93.726	Nomascus_leucogenys
ENSODEG00000012426	UPF1	83	93.725	ENSMEUG00000014146	-	83	93.725	Notamacropus_eugenii
ENSODEG00000012426	UPF1	95	90.589	ENSOPRG00000014018	UPF1	99	90.544	Ochotona_princeps
ENSODEG00000012426	UPF1	100	90.257	ENSONIG00000010452	upf1	100	91.451	Oreochromis_niloticus
ENSODEG00000012426	UPF1	100	92.709	ENSONIG00000012729	-	100	92.709	Oreochromis_niloticus
ENSODEG00000012426	UPF1	100	96.631	ENSOANG00000004568	UPF1	100	96.631	Ornithorhynchus_anatinus
ENSODEG00000012426	UPF1	100	92.626	ENSORLG00000008453	upf1	100	92.626	Oryzias_latipes
ENSODEG00000012426	UPF1	100	92.633	ENSORLG00020014758	upf1	100	92.453	Oryzias_latipes_hni
ENSODEG00000012426	UPF1	100	92.633	ENSORLG00015010165	upf1	100	92.453	Oryzias_latipes_hsok
ENSODEG00000012426	UPF1	100	92.626	ENSOMEG00000003665	upf1	100	92.626	Oryzias_melastigma
ENSODEG00000012426	UPF1	100	96.988	ENSOGAG00000012866	UPF1	100	96.988	Otolemur_garnettii
ENSODEG00000012426	UPF1	96	96.777	ENSOARG00000010739	UPF1	100	96.777	Ovis_aries
ENSODEG00000012426	UPF1	96	98.783	ENSPPAG00000043884	UPF1	97	98.783	Pan_paniscus
ENSODEG00000012426	UPF1	100	97.611	ENSPPRG00000023470	UPF1	100	97.611	Panthera_pardus
ENSODEG00000012426	UPF1	95	96.289	ENSPTIG00000010159	UPF1	99	96.289	Panthera_tigris_altaica
ENSODEG00000012426	UPF1	100	98.483	ENSPTRG00000010721	UPF1	100	98.483	Pan_troglodytes
ENSODEG00000012426	UPF1	100	98.483	ENSPANG00000008847	UPF1	100	98.483	Papio_anubis
ENSODEG00000012426	UPF1	91	95.271	ENSPKIG00000006069	upf1	99	92.844	Paramormyrops_kingsleyae
ENSODEG00000012426	UPF1	69	97.778	ENSPSIG00000009491	UPF1	100	97.778	Pelodiscus_sinensis
ENSODEG00000012426	UPF1	100	89.148	ENSPMGG00000017327	upf1	100	89.346	Periophthalmus_magnuspinnatus
ENSODEG00000012426	UPF1	100	97.776	ENSPEMG00000001085	Upf1	100	97.776	Peromyscus_maniculatus_bairdii
ENSODEG00000012426	UPF1	100	87.478	ENSPMAG00000001206	upf1	100	87.265	Petromyzon_marinus
ENSODEG00000012426	UPF1	100	96.103	ENSPCIG00000006156	UPF1	100	96.103	Phascolarctos_cinereus
ENSODEG00000012426	UPF1	100	92.169	ENSPLAG00000016232	-	100	92.619	Poecilia_latipinna
ENSODEG00000012426	UPF1	100	89.563	ENSPLAG00000018155	-	100	89.563	Poecilia_latipinna
ENSODEG00000012426	UPF1	100	92.259	ENSPMEG00000016319	-	100	92.709	Poecilia_mexicana
ENSODEG00000012426	UPF1	100	89.937	ENSPMEG00000011443	-	100	89.937	Poecilia_mexicana
ENSODEG00000012426	UPF1	100	91.989	ENSPREG00000011247	-	100	92.439	Poecilia_reticulata
ENSODEG00000012426	UPF1	100	89.964	ENSPREG00000009940	upf1	100	89.876	Poecilia_reticulata
ENSODEG00000012426	UPF1	100	93.003	ENSPPYG00000009752	UPF1	100	93.003	Pongo_abelii
ENSODEG00000012426	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSODEG00000012426	UPF1	100	98.219	ENSPCOG00000023813	UPF1	100	98.219	Propithecus_coquereli
ENSODEG00000012426	UPF1	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSODEG00000012426	UPF1	100	89.991	ENSPNYG00000003694	upf1	100	91.184	Pundamilia_nyererei
ENSODEG00000012426	UPF1	100	92.619	ENSPNYG00000016731	-	100	92.619	Pundamilia_nyererei
ENSODEG00000012426	UPF1	100	93.255	ENSPNAG00000025614	upf1	100	93.795	Pygocentrus_nattereri
ENSODEG00000012426	UPF1	100	97.687	ENSRNOG00000020134	Upf1	100	97.687	Rattus_norvegicus
ENSODEG00000012426	UPF1	96	96.348	ENSRBIG00000013894	UPF1	98	98.052	Rhinopithecus_bieti
ENSODEG00000012426	UPF1	96	98.689	ENSRROG00000040935	UPF1	99	98.689	Rhinopithecus_roxellana
ENSODEG00000012426	UPF1	78	54.765	YMR080C	NAM7	84	56.348	Saccharomyces_cerevisiae
ENSODEG00000012426	UPF1	96	97.953	ENSSBOG00000023632	UPF1	98	97.953	Saimiri_boliviensis_boliviensis
ENSODEG00000012426	UPF1	95	98.575	ENSSHAG00000010499	UPF1	100	98.575	Sarcophilus_harrisii
ENSODEG00000012426	UPF1	100	95.230	ENSSFOG00015021095	upf1	100	95.230	Scleropages_formosus
ENSODEG00000012426	UPF1	100	92.716	ENSSMAG00000021018	-	100	92.806	Scophthalmus_maximus
ENSODEG00000012426	UPF1	100	89.254	ENSSMAG00000005055	upf1	100	90.062	Scophthalmus_maximus
ENSODEG00000012426	UPF1	100	92.896	ENSSDUG00000009629	-	100	92.986	Seriola_dumerili
ENSODEG00000012426	UPF1	100	90.160	ENSSDUG00000013320	upf1	100	90.957	Seriola_dumerili
ENSODEG00000012426	UPF1	100	92.896	ENSSLDG00000006878	-	100	92.986	Seriola_lalandi_dorsalis
ENSODEG00000012426	UPF1	100	90.966	ENSSLDG00000020868	upf1	100	91.250	Seriola_lalandi_dorsalis
ENSODEG00000012426	UPF1	100	96.253	ENSSPUG00000010538	UPF1	100	96.253	Sphenodon_punctatus
ENSODEG00000012426	UPF1	100	89.379	ENSSPAG00000000003	upf1	100	89.408	Stegastes_partitus
ENSODEG00000012426	UPF1	100	92.709	ENSSPAG00000011521	-	100	92.709	Stegastes_partitus
ENSODEG00000012426	UPF1	100	97.604	ENSSSCG00000039301	UPF1	100	97.604	Sus_scrofa
ENSODEG00000012426	UPF1	83	89.255	ENSTGUG00000001057	UPF1	100	94.231	Taeniopygia_guttata
ENSODEG00000012426	UPF1	100	91.719	ENSTRUG00000005131	-	100	91.809	Takifugu_rubripes
ENSODEG00000012426	UPF1	100	90.811	ENSTRUG00000000150	upf1	100	90.631	Takifugu_rubripes
ENSODEG00000012426	UPF1	100	92.813	ENSTTRG00000011544	UPF1	100	92.458	Tursiops_truncatus
ENSODEG00000012426	UPF1	100	96.637	ENSUAMG00000007093	UPF1	100	96.637	Ursus_americanus
ENSODEG00000012426	UPF1	95	98.500	ENSUMAG00000006652	UPF1	99	98.500	Ursus_maritimus
ENSODEG00000012426	UPF1	100	96.726	ENSVVUG00000007797	UPF1	100	96.726	Vulpes_vulpes
ENSODEG00000012426	UPF1	100	81.586	ENSXETG00000013602	upf1	100	81.586	Xenopus_tropicalis
ENSODEG00000012426	UPF1	94	93.282	ENSXCOG00000005764	-	100	93.762	Xiphophorus_couchianus
ENSODEG00000012426	UPF1	97	89.851	ENSXCOG00000015275	-	96	89.851	Xiphophorus_couchianus
ENSODEG00000012426	UPF1	100	90.099	ENSXMAG00000001703	-	100	90.099	Xiphophorus_maculatus
ENSODEG00000012426	UPF1	100	92.079	ENSXMAG00000002540	-	100	92.529	Xiphophorus_maculatus