EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000012499 (Gene tree)
Gene ID: 101576328
Gene Symbol: TNRC6C
Alias: -
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 60613 bases
Position: chrJH651548.1:17977645-18038257
Accession: 101576328
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000016962	Ago_hook	PF10427.9	1e-22	1	1
ENSODEP00000016962	RRM_1	PF00076.22	0.00021	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000017175	TNRC6C-201	5055	XM_004630144	ENSODEP00000016962	1684 (aa)	-	-

Gene Model

Click here to download ENSODEG00000012499's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000012499's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000012499	TNRC6C	93	34.932	ENSODEG00000013146	TNRC6B	81	35.533
ENSODEG00000012499	TNRC6C	97	41.097	ENSODEG00000012802	TNRC6A	85	40.326

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000012499	TNRC6C	100	92.071	ENSG00000078687	TNRC6C	100	92.632	Homo_sapiens
ENSODEG00000012499	TNRC6C	89	55.190	ENSAPOG00000019749	tnrc6c1	93	51.130	Acanthochromis_polyacanthus
ENSODEG00000012499	TNRC6C	100	86.262	ENSAMEG00000013756	TNRC6C	96	86.491	Ailuropoda_melanoleuca
ENSODEG00000012499	TNRC6C	91	51.450	ENSACIG00000008075	tnrc6c1	79	52.646	Amphilophus_citrinellus
ENSODEG00000012499	TNRC6C	87	63.531	ENSAOCG00000023968	tnrc6c1	94	50.304	Amphiprion_ocellaris
ENSODEG00000012499	TNRC6C	88	55.248	ENSAPEG00000009020	tnrc6c1	94	50.954	Amphiprion_percula
ENSODEG00000012499	TNRC6C	100	84.346	ENSAPLG00000005456	TNRC6C	90	83.658	Anas_platyrhynchos
ENSODEG00000012499	TNRC6C	100	85.235	ENSACAG00000016198	TNRC6C	88	84.655	Anolis_carolinensis
ENSODEG00000012499	TNRC6C	100	91.533	ENSANAG00000021554	TNRC6C	100	91.652	Aotus_nancymaae
ENSODEG00000012499	TNRC6C	97	51.327	ENSACLG00000000424	tnrc6c1	93	52.206	Astatotilapia_calliptera
ENSODEG00000012499	TNRC6C	100	87.567	ENSBTAG00000018658	TNRC6C	100	88.099	Bos_taurus
ENSODEG00000012499	TNRC6C	100	91.829	ENSCJAG00000019431	TNRC6C	100	91.652	Callithrix_jacchus
ENSODEG00000012499	TNRC6C	100	88.876	ENSCAFG00000005224	TNRC6C	89	88.760	Canis_familiaris
ENSODEG00000012499	TNRC6C	100	90.501	ENSCAFG00020006661	TNRC6C	100	89.567	Canis_lupus_dingo
ENSODEG00000012499	TNRC6C	100	87.900	ENSCHIG00000026004	TNRC6C	100	86.498	Capra_hircus
ENSODEG00000012499	TNRC6C	100	91.589	ENSTSYG00000005403	TNRC6C	100	91.415	Carlito_syrichta
ENSODEG00000012499	TNRC6C	100	88.961	ENSCAPG00000007307	TNRC6C	89	88.771	Cavia_aperea
ENSODEG00000012499	TNRC6C	100	94.656	ENSCPOG00000000467	TNRC6C	97	94.656	Cavia_porcellus
ENSODEG00000012499	TNRC6C	100	92.422	ENSCCAG00000030524	TNRC6C	100	92.244	Cebus_capucinus
ENSODEG00000012499	TNRC6C	100	92.185	ENSCATG00000033135	TNRC6C	100	92.007	Cercocebus_atys
ENSODEG00000012499	TNRC6C	100	97.151	ENSCLAG00000011139	TNRC6C	89	97.151	Chinchilla_lanigera
ENSODEG00000012499	TNRC6C	100	90.551	ENSCSAG00000005167	TNRC6C	89	90.377	Chlorocebus_sabaeus
ENSODEG00000012499	TNRC6C	71	91.083	ENSCHOG00000000088	TNRC6C	68	89.871	Choloepus_hoffmanni
ENSODEG00000012499	TNRC6C	100	87.626	ENSCPBG00000027960	TNRC6C	100	87.389	Chrysemys_picta_bellii
ENSODEG00000012499	TNRC6C	100	91.711	ENSCANG00000041771	TNRC6C	100	91.533	Colobus_angolensis_palliatus
ENSODEG00000012499	TNRC6C	100	89.965	ENSCGRG00001022686	Tnrc6c	100	89.315	Cricetulus_griseus_chok1gshd
ENSODEG00000012499	TNRC6C	100	90.391	ENSCGRG00000018041	Tnrc6c	100	89.315	Cricetulus_griseus_crigri
ENSODEG00000012499	TNRC6C	100	48.920	ENSCSEG00000012744	tnrc6c1	90	49.583	Cynoglossus_semilaevis
ENSODEG00000012499	TNRC6C	94	55.340	ENSDARG00000076847	tnrc6c1	99	53.193	Danio_rerio
ENSODEG00000012499	TNRC6C	100	88.252	ENSDNOG00000003247	TNRC6C	91	88.079	Dasypus_novemcinctus
ENSODEG00000012499	TNRC6C	100	87.139	ENSDORG00000004558	Tnrc6c	100	87.021	Dipodomys_ordii
ENSODEG00000012499	TNRC6C	90	82.681	ENSETEG00000005527	TNRC6C	87	82.768	Echinops_telfairi
ENSODEG00000012499	TNRC6C	100	91.281	ENSEASG00005004799	TNRC6C	100	91.281	Equus_asinus_asinus
ENSODEG00000012499	TNRC6C	100	91.281	ENSECAG00000012486	TNRC6C	90	91.281	Equus_caballus
ENSODEG00000012499	TNRC6C	96	90.018	ENSEEUG00000010008	TNRC6C	93	89.834	Erinaceus_europaeus
ENSODEG00000012499	TNRC6C	100	88.771	ENSFCAG00000028358	TNRC6C	100	88.593	Felis_catus
ENSODEG00000012499	TNRC6C	100	83.825	ENSFALG00000000848	TNRC6C	100	83.371	Ficedula_albicollis
ENSODEG00000012499	TNRC6C	100	95.309	ENSFDAG00000010368	TNRC6C	97	95.309	Fukomys_damarensis
ENSODEG00000012499	TNRC6C	75	66.096	ENSFHEG00000002936	tnrc6c1	94	48.644	Fundulus_heteroclitus
ENSODEG00000012499	TNRC6C	100	88.434	ENSGALG00000001725	TNRC6C	100	87.841	Gallus_gallus
ENSODEG00000012499	TNRC6C	100	49.333	ENSGAFG00000019019	tnrc6c1	100	49.833	Gambusia_affinis
ENSODEG00000012499	TNRC6C	80	54.396	ENSGACG00000012320	tnrc6c1	86	49.798	Gasterosteus_aculeatus
ENSODEG00000012499	TNRC6C	100	87.219	ENSGAGG00000022043	TNRC6C	95	86.864	Gopherus_agassizii
ENSODEG00000012499	TNRC6C	100	91.775	ENSGGOG00000011304	TNRC6C	100	91.479	Gorilla_gorilla
ENSODEG00000012499	TNRC6C	97	51.544	ENSHBUG00000010846	tnrc6c1	99	52.793	Haplochromis_burtoni
ENSODEG00000012499	TNRC6C	100	95.727	ENSHGLG00000004809	TNRC6C	89	95.549	Heterocephalus_glaber_female
ENSODEG00000012499	TNRC6C	100	94.920	ENSHGLG00100012597	TNRC6C	89	94.802	Heterocephalus_glaber_male
ENSODEG00000012499	TNRC6C	94	54.860	ENSIPUG00000000818	tnrc6c1	88	54.792	Ictalurus_punctatus
ENSODEG00000012499	TNRC6C	100	92.358	ENSSTOG00000009101	TNRC6C	97	92.239	Ictidomys_tridecemlineatus
ENSODEG00000012499	TNRC6C	100	90.083	ENSJJAG00000017055	Tnrc6c	89	89.374	Jaculus_jaculus
ENSODEG00000012499	TNRC6C	100	50.231	ENSKMAG00000021023	tnrc6c1	98	51.086	Kryptolebias_marmoratus
ENSODEG00000012499	TNRC6C	100	75.059	ENSLACG00000015283	TNRC6C	97	75.059	Latimeria_chalumnae
ENSODEG00000012499	TNRC6C	98	57.804	ENSLOCG00000013377	tnrc6c1	87	58.603	Lepisosteus_oculatus
ENSODEG00000012499	TNRC6C	100	90.608	ENSLAFG00000011122	TNRC6C	90	90.077	Loxodonta_africana
ENSODEG00000012499	TNRC6C	100	92.185	ENSMFAG00000043943	TNRC6C	100	92.007	Macaca_fascicularis
ENSODEG00000012499	TNRC6C	100	92.185	ENSMMUG00000011924	TNRC6C	100	92.007	Macaca_mulatta
ENSODEG00000012499	TNRC6C	100	92.126	ENSMNEG00000030405	TNRC6C	100	91.948	Macaca_nemestrina
ENSODEG00000012499	TNRC6C	100	92.244	ENSMLEG00000033436	TNRC6C	100	92.066	Mandrillus_leucophaeus
ENSODEG00000012499	TNRC6C	94	53.921	ENSMAMG00000023613	tnrc6c1	100	50.307	Mastacembelus_armatus
ENSODEG00000012499	TNRC6C	97	51.327	ENSMZEG00005010920	tnrc6c1	93	52.206	Maylandia_zebra
ENSODEG00000012499	TNRC6C	100	78.514	ENSMGAG00000003906	TNRC6C	90	78.341	Meleagris_gallopavo
ENSODEG00000012499	TNRC6C	100	90.024	ENSMAUG00000021618	Tnrc6c	100	89.728	Mesocricetus_auratus
ENSODEG00000012499	TNRC6C	100	92.895	ENSMICG00000003952	TNRC6C	100	92.599	Microcebus_murinus
ENSODEG00000012499	TNRC6C	100	91.934	ENSMOCG00000015879	Tnrc6c	97	91.637	Microtus_ochrogaster
ENSODEG00000012499	TNRC6C	92	56.371	ENSMMOG00000005203	tnrc6c1	100	51.015	Mola_mola
ENSODEG00000012499	TNRC6C	100	86.439	ENSMODG00000001785	TNRC6C	89	85.849	Monodelphis_domestica
ENSODEG00000012499	TNRC6C	100	91.934	MGP_CAROLIEiJ_G0017465	Tnrc6c	97	91.637	Mus_caroli
ENSODEG00000012499	TNRC6C	100	91.637	ENSMUSG00000025571	Tnrc6c	97	91.340	Mus_musculus
ENSODEG00000012499	TNRC6C	100	91.637	MGP_PahariEiJ_G0018593	Tnrc6c	97	91.340	Mus_pahari
ENSODEG00000012499	TNRC6C	100	91.696	MGP_SPRETEiJ_G0018309	Tnrc6c	97	91.400	Mus_spretus
ENSODEG00000012499	TNRC6C	100	85.623	ENSMPUG00000013348	TNRC6C	88	86.385	Mustela_putorius_furo
ENSODEG00000012499	TNRC6C	100	81.808	ENSMLUG00000014431	TNRC6C	88	82.624	Myotis_lucifugus
ENSODEG00000012499	TNRC6C	100	91.672	ENSNGAG00000012203	Tnrc6c	89	91.317	Nannospalax_galili
ENSODEG00000012499	TNRC6C	100	49.105	ENSNBRG00000005344	tnrc6c1	93	52.994	Neolamprologus_brichardi
ENSODEG00000012499	TNRC6C	100	87.594	ENSNLEG00000000047	TNRC6C	89	87.421	Nomascus_leucogenys
ENSODEG00000012499	TNRC6C	97	80.655	ENSMEUG00000005104	TNRC6C	97	80.594	Notamacropus_eugenii
ENSODEG00000012499	TNRC6C	94	51.191	ENSONIG00000002210	tnrc6c1	96	51.915	Oreochromis_niloticus
ENSODEG00000012499	TNRC6C	99	63.897	ENSOANG00000009758	-	90	63.642	Ornithorhynchus_anatinus
ENSODEG00000012499	TNRC6C	91	50.459	ENSORLG00000009837	tnrc6c1	100	66.914	Oryzias_latipes
ENSODEG00000012499	TNRC6C	100	47.993	ENSORLG00020016510	tnrc6c1	100	49.114	Oryzias_latipes_hni
ENSODEG00000012499	TNRC6C	80	44.375	ENSORLG00015000171	tnrc6c1	98	44.421	Oryzias_latipes_hsok
ENSODEG00000012499	TNRC6C	91	51.008	ENSOMEG00000000357	tnrc6c1	94	49.668	Oryzias_melastigma
ENSODEG00000012499	TNRC6C	100	89.733	ENSOGAG00000007197	TNRC6C	100	89.559	Otolemur_garnettii
ENSODEG00000012499	TNRC6C	96	83.041	ENSOARG00000006041	TNRC6C	87	83.323	Ovis_aries
ENSODEG00000012499	TNRC6C	100	92.007	ENSPPAG00000027160	TNRC6C	100	91.829	Pan_paniscus
ENSODEG00000012499	TNRC6C	100	88.948	ENSPPRG00000018881	TNRC6C	100	88.771	Panthera_pardus
ENSODEG00000012499	TNRC6C	90	85.153	ENSPTIG00000008791	TNRC6C	83	85.153	Panthera_tigris_altaica
ENSODEG00000012499	TNRC6C	100	92.007	ENSPTRG00000009699	TNRC6C	100	91.829	Pan_troglodytes
ENSODEG00000012499	TNRC6C	100	92.764	ENSPANG00000019994	TNRC6C	100	92.527	Papio_anubis
ENSODEG00000012499	TNRC6C	59	62.203	ENSPKIG00000005428	tnrc6c1	98	51.433	Paramormyrops_kingsleyae
ENSODEG00000012499	TNRC6C	100	85.562	ENSPSIG00000018069	TNRC6C	97	85.148	Pelodiscus_sinensis
ENSODEG00000012499	TNRC6C	65	54.194	ENSPMGG00000022911	tnrc6c1	97	62.857	Periophthalmus_magnuspinnatus
ENSODEG00000012499	TNRC6C	100	91.908	ENSPEMG00000009785	Tnrc6c	100	88.955	Peromyscus_maniculatus_bairdii
ENSODEG00000012499	TNRC6C	57	84.671	ENSPCIG00000017421	-	99	84.568	Phascolarctos_cinereus
ENSODEG00000012499	TNRC6C	100	49.361	ENSPFOG00000012560	tnrc6c1	97	55.509	Poecilia_formosa
ENSODEG00000012499	TNRC6C	100	49.528	ENSPLAG00000021055	tnrc6c1	100	50.028	Poecilia_latipinna
ENSODEG00000012499	TNRC6C	100	90.667	ENSPPYG00000008679	TNRC6C	88	90.493	Pongo_abelii
ENSODEG00000012499	TNRC6C	93	92.654	ENSPCAG00000012510	TNRC6C	91	92.654	Procavia_capensis
ENSODEG00000012499	TNRC6C	100	93.073	ENSPCOG00000021451	TNRC6C	100	92.895	Propithecus_coquereli
ENSODEG00000012499	TNRC6C	96	88.983	ENSPVAG00000002008	TNRC6C	93	88.983	Pteropus_vampyrus
ENSODEG00000012499	TNRC6C	97	51.088	ENSPNYG00000014477	tnrc6c1	99	52.546	Pundamilia_nyererei
ENSODEG00000012499	TNRC6C	100	91.114	ENSRNOG00000022395	Tnrc6c	100	90.936	Rattus_norvegicus
ENSODEG00000012499	TNRC6C	100	92.007	ENSRBIG00000027777	TNRC6C	100	91.829	Rhinopithecus_bieti
ENSODEG00000012499	TNRC6C	100	92.066	ENSRROG00000042912	TNRC6C	100	91.889	Rhinopithecus_roxellana
ENSODEG00000012499	TNRC6C	100	90.029	ENSSBOG00000023981	TNRC6C	100	89.855	Saimiri_boliviensis_boliviensis
ENSODEG00000012499	TNRC6C	52	86.688	ENSSHAG00000018330	-	100	85.931	Sarcophilus_harrisii
ENSODEG00000012499	TNRC6C	78	58.429	ENSSFOG00015006475	tnrc6c1	92	52.702	Scleropages_formosus
ENSODEG00000012499	TNRC6C	68	56.592	ENSSFOG00015004735	-	99	61.097	Scleropages_formosus
ENSODEG00000012499	TNRC6C	100	49.114	ENSSMAG00000012761	tnrc6c1	99	50.833	Scophthalmus_maximus
ENSODEG00000012499	TNRC6C	100	51.029	ENSSDUG00000002366	tnrc6c1	93	52.030	Seriola_dumerili
ENSODEG00000012499	TNRC6C	100	49.667	ENSSLDG00000025613	tnrc6c1	100	50.416	Seriola_lalandi_dorsalis
ENSODEG00000012499	TNRC6C	91	89.224	ENSSARG00000006816	TNRC6C	88	88.987	Sorex_araneus
ENSODEG00000012499	TNRC6C	82	83.808	ENSSPUG00000007341	TNRC6C	91	83.113	Sphenodon_punctatus
ENSODEG00000012499	TNRC6C	78	54.314	ENSSPAG00000014977	tnrc6c1	92	49.805	Stegastes_partitus
ENSODEG00000012499	TNRC6C	100	84.866	ENSSSCG00000034373	TNRC6C	100	87.480	Sus_scrofa
ENSODEG00000012499	TNRC6C	100	87.692	ENSTGUG00000007733	TNRC6C	97	87.160	Taeniopygia_guttata
ENSODEG00000012499	TNRC6C	79	54.035	ENSTRUG00000011685	tnrc6c1	100	49.475	Takifugu_rubripes
ENSODEG00000012499	TNRC6C	80	54.978	ENSTNIG00000005273	tnrc6c1	100	59.764	Tetraodon_nigroviridis
ENSODEG00000012499	TNRC6C	64	89.844	ENSTBEG00000005046	TNRC6C	94	89.844	Tupaia_belangeri
ENSODEG00000012499	TNRC6C	100	90.710	ENSTTRG00000010828	TNRC6C	97	90.710	Tursiops_truncatus
ENSODEG00000012499	TNRC6C	100	88.097	ENSUMAG00000013614	TNRC6C	90	87.920	Ursus_maritimus
ENSODEG00000012499	TNRC6C	52	81.072	ENSVPAG00000006765	-	99	81.078	Vicugna_pacos
ENSODEG00000012499	TNRC6C	100	91.108	ENSVVUG00000015268	TNRC6C	100	90.931	Vulpes_vulpes
ENSODEG00000012499	TNRC6C	100	74.647	ENSXETG00000019470	tnrc6c	100	74.235	Xenopus_tropicalis
ENSODEG00000012499	TNRC6C	100	50.345	ENSXMAG00000025971	tnrc6c1	100	49.638	Xiphophorus_maculatus