EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000012580 (Gene tree)
Gene ID: 101570060
Gene Symbol: SLIRP
Alias: -
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 5043 bases
Position: chrJH651522.1:9136518-9141560
Accession: 101570060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000017078	RRM_1	PF00076.22	3.6e-13	1	1
ENSODEP00000017077	RRM_1	PF00076.22	5.5e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000017291	SLIRP-201	339	XM_004624718	ENSODEP00000017077	112 (aa)	XP_004624775	-
ENSODET00000017292	SLIRP-202	276	-	ENSODEP00000017078	92 (aa)	-	-

Gene Model

Click here to download ENSODEG00000012580's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000012580's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000012580	SLIRP	83	30.769	ENSODEG00000006830	HNRNPAB	51	30.769

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000012580	SLIRP	83	78.947	ENSG00000119705	SLIRP	100	78.947	Homo_sapiens
ENSODEG00000012580	SLIRP	76	55.714	ENSAPOG00000001298	slirp	76	56.579	Acanthochromis_polyacanthus
ENSODEG00000012580	SLIRP	99	75.824	ENSAMEG00000003975	SLIRP	100	75.824	Ailuropoda_melanoleuca
ENSODEG00000012580	SLIRP	76	57.143	ENSACIG00000023083	slirp	87	52.273	Amphilophus_citrinellus
ENSODEG00000012580	SLIRP	76	58.571	ENSAOCG00000006342	slirp	89	52.222	Amphiprion_ocellaris
ENSODEG00000012580	SLIRP	76	58.571	ENSAPEG00000015917	slirp	89	52.222	Amphiprion_percula
ENSODEG00000012580	SLIRP	76	58.571	ENSAPEG00000015719	-	90	52.222	Amphiprion_percula
ENSODEG00000012580	SLIRP	76	52.857	ENSATEG00000013525	slirp	74	52.703	Anabas_testudineus
ENSODEG00000012580	SLIRP	76	58.571	ENSAMXG00000018693	slirp	88	54.545	Astyanax_mexicanus
ENSODEG00000012580	SLIRP	99	75.824	ENSCJAG00000016946	SLIRP	96	76.404	Callithrix_jacchus
ENSODEG00000012580	SLIRP	99	70.330	ENSCAFG00020015876	-	98	71.560	Canis_lupus_dingo
ENSODEG00000012580	SLIRP	99	76.923	ENSCCAG00000030130	SLIRP	98	74.312	Cebus_capucinus
ENSODEG00000012580	SLIRP	99	81.319	ENSCATG00000036327	SLIRP	96	80.899	Cercocebus_atys
ENSODEG00000012580	SLIRP	88	79.012	ENSCSAG00000011736	SLIRP	96	75.926	Chlorocebus_sabaeus
ENSODEG00000012580	SLIRP	76	60.000	ENSCPBG00000026327	SLIRP	71	60.000	Chrysemys_picta_bellii
ENSODEG00000012580	SLIRP	80	82.432	ENSCANG00000032892	SLIRP	91	79.775	Colobus_angolensis_palliatus
ENSODEG00000012580	SLIRP	99	69.231	ENSCGRG00001024068	Slirp	98	65.138	Cricetulus_griseus_chok1gshd
ENSODEG00000012580	SLIRP	99	69.231	ENSCGRG00000017440	Slirp	98	65.138	Cricetulus_griseus_crigri
ENSODEG00000012580	SLIRP	99	48.352	ENSCSEG00000015766	slirp	84	48.913	Cynoglossus_semilaevis
ENSODEG00000012580	SLIRP	75	62.319	ENSCVAG00000012504	slirp	68	62.319	Cyprinodon_variegatus
ENSODEG00000012580	SLIRP	77	57.746	ENSDARG00000097753	slirp	72	58.108	Danio_rerio
ENSODEG00000012580	SLIRP	79	68.539	ENSDNOG00000007721	SLIRP	98	64.220	Dasypus_novemcinctus
ENSODEG00000012580	SLIRP	99	78.022	ENSDORG00000012379	Slirp	100	77.477	Dipodomys_ordii
ENSODEG00000012580	SLIRP	87	67.500	ENSETEG00000010345	SLIRP	98	65.138	Echinops_telfairi
ENSODEG00000012580	SLIRP	99	78.378	ENSEASG00005020193	SLIRP	100	78.378	Equus_asinus_asinus
ENSODEG00000012580	SLIRP	89	60.976	ENSEEUG00000007257	SLIRP	100	58.824	Erinaceus_europaeus
ENSODEG00000012580	SLIRP	76	54.286	ENSELUG00000016800	slirp	84	51.163	Esox_lucius
ENSODEG00000012580	SLIRP	100	76.087	ENSFCAG00000036326	SLIRP	94	76.087	Felis_catus
ENSODEG00000012580	SLIRP	76	51.429	ENSFALG00000012583	SLIRP	75	49.367	Ficedula_albicollis
ENSODEG00000012580	SLIRP	99	72.917	ENSFDAG00000008347	SLIRP	100	74.336	Fukomys_damarensis
ENSODEG00000012580	SLIRP	66	55.738	ENSFHEG00000004709	slirp	86	49.383	Fundulus_heteroclitus
ENSODEG00000012580	SLIRP	76	55.714	ENSGMOG00000016948	slirp	71	55.405	Gadus_morhua
ENSODEG00000012580	SLIRP	76	51.429	ENSGALG00000031238	SLIRP	91	47.674	Gallus_gallus
ENSODEG00000012580	SLIRP	77	59.155	ENSGAFG00000010998	slirp	77	59.740	Gambusia_affinis
ENSODEG00000012580	SLIRP	77	54.930	ENSGACG00000020137	slirp	83	54.930	Gasterosteus_aculeatus
ENSODEG00000012580	SLIRP	76	62.857	ENSGAGG00000009953	SLIRP	60	54.023	Gopherus_agassizii
ENSODEG00000012580	SLIRP	83	78.947	ENSGGOG00000011059	-	96	77.528	Gorilla_gorilla
ENSODEG00000012580	SLIRP	97	68.807	ENSHGLG00000018491	SLIRP	98	68.807	Heterocephalus_glaber_female
ENSODEG00000012580	SLIRP	97	68.807	ENSHGLG00100014153	SLIRP	98	68.807	Heterocephalus_glaber_male
ENSODEG00000012580	SLIRP	76	58.571	ENSHCOG00000006795	slirp	72	59.155	Hippocampus_comes
ENSODEG00000012580	SLIRP	76	57.143	ENSIPUG00000010214	SLIRP	76	57.895	Ictalurus_punctatus
ENSODEG00000012580	SLIRP	88	74.490	ENSSTOG00000034316	SLIRP	98	75.229	Ictidomys_tridecemlineatus
ENSODEG00000012580	SLIRP	76	45.714	ENSKMAG00000002038	slirp	88	42.391	Kryptolebias_marmoratus
ENSODEG00000012580	SLIRP	76	55.714	ENSLBEG00000007564	slirp	76	56.579	Labrus_bergylta
ENSODEG00000012580	SLIRP	76	60.000	ENSLACG00000013434	SLIRP	82	56.977	Latimeria_chalumnae
ENSODEG00000012580	SLIRP	87	80.000	ENSMFAG00000042960	SLIRP	96	79.775	Macaca_fascicularis
ENSODEG00000012580	SLIRP	85	80.769	ENSMMUG00000029256	SLIRP	96	79.775	Macaca_mulatta
ENSODEG00000012580	SLIRP	87	80.000	ENSMNEG00000028921	SLIRP	96	79.775	Macaca_nemestrina
ENSODEG00000012580	SLIRP	97	80.899	ENSMLEG00000043644	SLIRP	91	80.899	Mandrillus_leucophaeus
ENSODEG00000012580	SLIRP	76	60.000	ENSMZEG00005004617	slirp	77	60.526	Maylandia_zebra
ENSODEG00000012580	SLIRP	99	73.626	ENSMAUG00000003857	Slirp	98	70.642	Mesocricetus_auratus
ENSODEG00000012580	SLIRP	99	70.330	ENSMICG00000012080	SLIRP	98	66.972	Microcebus_murinus
ENSODEG00000012580	SLIRP	100	72.826	ENSMOCG00000016019	Slirp	100	71.429	Microtus_ochrogaster
ENSODEG00000012580	SLIRP	76	52.857	ENSMMOG00000018268	slirp	76	53.947	Mola_mola
ENSODEG00000012580	SLIRP	76	64.286	ENSMODG00000005207	-	99	64.286	Monodelphis_domestica
ENSODEG00000012580	SLIRP	76	55.714	ENSMALG00000012581	slirp	76	55.405	Monopterus_albus
ENSODEG00000012580	SLIRP	100	71.429	MGP_CAROLIEiJ_G0017995	Slirp	100	71.429	Mus_caroli
ENSODEG00000012580	SLIRP	100	73.913	ENSMUSG00000021040	Slirp	100	73.214	Mus_musculus
ENSODEG00000012580	SLIRP	100	73.214	MGP_SPRETEiJ_G0018840	Slirp	100	73.214	Mus_spretus
ENSODEG00000012580	SLIRP	83	72.043	ENSMLUG00000024998	-	98	71.560	Myotis_lucifugus
ENSODEG00000012580	SLIRP	88	71.429	ENSMLUG00000029544	-	98	71.560	Myotis_lucifugus
ENSODEG00000012580	SLIRP	99	69.231	ENSNGAG00000016363	Slirp	100	69.444	Nannospalax_galili
ENSODEG00000012580	SLIRP	91	69.048	ENSNLEG00000027238	-	97	69.048	Nomascus_leucogenys
ENSODEG00000012580	SLIRP	99	72.527	ENSNLEG00000032459	-	96	73.034	Nomascus_leucogenys
ENSODEG00000012580	SLIRP	76	60.000	ENSONIG00000011692	slirp	86	55.172	Oreochromis_niloticus
ENSODEG00000012580	SLIRP	96	63.636	ENSOANG00000022366	SLIRP	93	57.944	Ornithorhynchus_anatinus
ENSODEG00000012580	SLIRP	76	54.286	ENSORLG00000010761	slirp	68	50.000	Oryzias_latipes
ENSODEG00000012580	SLIRP	76	55.714	ENSORLG00020022188	slirp	88	51.111	Oryzias_latipes_hni
ENSODEG00000012580	SLIRP	99	47.253	ENSORLG00015020171	slirp	99	45.045	Oryzias_latipes_hsok
ENSODEG00000012580	SLIRP	76	58.571	ENSOMEG00000019321	slirp	76	59.211	Oryzias_melastigma
ENSODEG00000012580	SLIRP	83	78.947	ENSPPAG00000040710	-	96	77.528	Pan_paniscus
ENSODEG00000012580	SLIRP	97	77.528	ENSPPRG00000014350	SLIRP	91	77.528	Panthera_pardus
ENSODEG00000012580	SLIRP	97	77.528	ENSPTIG00000014196	SLIRP	91	77.528	Panthera_tigris_altaica
ENSODEG00000012580	SLIRP	83	78.947	ENSPTRG00000030691	SLIRP	96	77.528	Pan_troglodytes
ENSODEG00000012580	SLIRP	99	82.418	ENSPANG00000026323	SLIRP	96	82.022	Papio_anubis
ENSODEG00000012580	SLIRP	65	50.000	ENSPKIG00000008831	slirp	73	45.946	Paramormyrops_kingsleyae
ENSODEG00000012580	SLIRP	74	64.706	ENSPMGG00000010541	slirp	78	64.706	Periophthalmus_magnuspinnatus
ENSODEG00000012580	SLIRP	92	67.308	ENSPEMG00000013234	Slirp	99	63.717	Peromyscus_maniculatus_bairdii
ENSODEG00000012580	SLIRP	68	52.381	ENSPMAG00000009355	slirp	76	51.471	Petromyzon_marinus
ENSODEG00000012580	SLIRP	87	59.756	ENSPCIG00000026842	-	88	59.756	Phascolarctos_cinereus
ENSODEG00000012580	SLIRP	76	57.143	ENSPFOG00000006758	slirp	89	50.549	Poecilia_formosa
ENSODEG00000012580	SLIRP	76	57.143	ENSPLAG00000011140	slirp	89	50.549	Poecilia_latipinna
ENSODEG00000012580	SLIRP	76	57.143	ENSPMEG00000019535	slirp	89	50.549	Poecilia_mexicana
ENSODEG00000012580	SLIRP	76	57.143	ENSPREG00000011673	slirp	76	57.895	Poecilia_reticulata
ENSODEG00000012580	SLIRP	87	73.750	ENSPPYG00000006030	SLIRP	97	70.642	Pongo_abelii
ENSODEG00000012580	SLIRP	99	71.429	ENSPCOG00000015159	SLIRP	98	68.807	Propithecus_coquereli
ENSODEG00000012580	SLIRP	76	62.857	ENSPNAG00000008633	slirp	87	57.471	Pygocentrus_nattereri
ENSODEG00000012580	SLIRP	87	73.750	ENSRBIG00000035817	-	99	72.222	Rhinopithecus_bieti
ENSODEG00000012580	SLIRP	87	75.000	ENSRBIG00000031396	-	91	75.824	Rhinopithecus_bieti
ENSODEG00000012580	SLIRP	87	80.000	ENSRBIG00000032222	-	96	79.775	Rhinopithecus_bieti
ENSODEG00000012580	SLIRP	84	77.922	ENSRBIG00000032998	-	81	78.409	Rhinopithecus_bieti
ENSODEG00000012580	SLIRP	87	76.250	ENSRROG00000035604	-	91	76.923	Rhinopithecus_roxellana
ENSODEG00000012580	SLIRP	84	79.221	ENSRROG00000017133	-	92	79.545	Rhinopithecus_roxellana
ENSODEG00000012580	SLIRP	87	77.500	ENSRROG00000041312	-	99	73.786	Rhinopithecus_roxellana
ENSODEG00000012580	SLIRP	87	78.750	ENSRROG00000036656	-	96	78.652	Rhinopithecus_roxellana
ENSODEG00000012580	SLIRP	99	69.231	ENSSBOG00000020014	SLIRP	96	69.663	Saimiri_boliviensis_boliviensis
ENSODEG00000012580	SLIRP	77	59.155	ENSSFOG00015011165	slirp	72	59.155	Scleropages_formosus
ENSODEG00000012580	SLIRP	76	50.000	ENSSMAG00000012930	slirp	85	45.977	Scophthalmus_maximus
ENSODEG00000012580	SLIRP	76	60.000	ENSSLDG00000023136	slirp	67	59.459	Seriola_lalandi_dorsalis
ENSODEG00000012580	SLIRP	76	55.714	ENSSPUG00000009346	SLIRP	76	54.054	Sphenodon_punctatus
ENSODEG00000012580	SLIRP	76	54.286	ENSSPAG00000013477	slirp	74	52.703	Stegastes_partitus
ENSODEG00000012580	SLIRP	99	76.923	ENSSSCG00000028167	SLIRP	98	76.147	Sus_scrofa
ENSODEG00000012580	SLIRP	76	54.286	ENSTGUG00000012337	SLIRP	80	49.412	Taeniopygia_guttata
ENSODEG00000012580	SLIRP	76	50.704	ENSTRUG00000020127	slirp	74	50.667	Takifugu_rubripes
ENSODEG00000012580	SLIRP	99	74.725	ENSUAMG00000022445	SLIRP	98	76.147	Ursus_americanus
ENSODEG00000012580	SLIRP	97	77.064	ENSUMAG00000007166	SLIRP	98	77.064	Ursus_maritimus
ENSODEG00000012580	SLIRP	99	75.824	ENSVPAG00000001781	SLIRP	98	72.477	Vicugna_pacos
ENSODEG00000012580	SLIRP	84	76.596	ENSVVUG00000004436	SLIRP	98	75.229	Vulpes_vulpes
ENSODEG00000012580	SLIRP	76	60.000	ENSXETG00000030343	SLIRP	79	60.000	Xenopus_tropicalis
ENSODEG00000012580	SLIRP	76	60.000	ENSXCOG00000009422	slirp	88	54.444	Xiphophorus_couchianus
ENSODEG00000012580	SLIRP	76	58.571	ENSXMAG00000015655	slirp	88	52.222	Xiphophorus_maculatus