EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000013166 (Gene tree)
Gene ID: 101591061
Gene Symbol: RBFOX1
Alias: -
Full Name: RNA binding fox-1 homolog 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 589038 bases
Position: chrJH651536.1:4150018-4739055
Accession: 101591061
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000017848	Fox-1_C	PF12414.8	1.1e-42	1	1
ENSODEP00000017846	Fox-1_C	PF12414.8	1.1e-42	1	1
ENSODEP00000017847	Fox-1_C	PF12414.8	1.3e-40	1	1
ENSODEP00000017847	RRM_1	PF00076.22	2.9e-18	1	1
ENSODEP00000017846	RRM_1	PF00076.22	3e-18	1	1
ENSODEP00000017848	RRM_1	PF00076.22	3e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000018072	RBFOX1-201	1194	XM_004627779	ENSODEP00000017846	397 (aa)	XP_004627836	UPI000333A0B4
ENSODET00000018073	RBFOX1-202	1257	XM_004627777	ENSODEP00000017847	418 (aa)	XP_004627834	UPI00033386A1
ENSODET00000018074	RBFOX1-203	1191	XM_004627785	ENSODEP00000017848	396 (aa)	-	-

Gene Model

Click here to download ENSODEG00000013166's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000013166's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000013166	RBFOX1	82	70.948	ENSODEG00000009433	RBFOX3	100	70.760
ENSODEG00000013166	RBFOX1	100	61.631	ENSODEG00000009937	RBFOX2	100	59.036

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000013166	RBFOX1	100	97.985	ENSG00000078328	RBFOX1	100	97.985	Homo_sapiens
ENSODEG00000013166	RBFOX1	100	76.145	ENSAPOG00000003197	rbfox1	100	76.627	Acanthochromis_polyacanthus
ENSODEG00000013166	RBFOX1	60	93.200	ENSAMEG00000008605	RBFOX1	100	93.200	Ailuropoda_melanoleuca
ENSODEG00000013166	RBFOX1	67	64.527	ENSACIG00000005478	rbfox1	68	64.983	Amphilophus_citrinellus
ENSODEG00000013166	RBFOX1	73	71.010	ENSAOCG00000008283	rbfox1	96	71.010	Amphiprion_ocellaris
ENSODEG00000013166	RBFOX1	95	71.693	ENSAPEG00000010636	rbfox1	100	71.579	Amphiprion_percula
ENSODEG00000013166	RBFOX1	75	68.671	ENSATEG00000007513	rbfox1	98	68.354	Anabas_testudineus
ENSODEG00000013166	RBFOX1	98	93.573	ENSAPLG00000013263	RBFOX1	97	93.573	Anas_platyrhynchos
ENSODEG00000013166	RBFOX1	99	86.935	ENSACAG00000004013	RBFOX1	100	86.466	Anolis_carolinensis
ENSODEG00000013166	RBFOX1	99	94.924	ENSANAG00000029527	RBFOX1	98	97.949	Aotus_nancymaae
ENSODEG00000013166	RBFOX1	57	85.268	ENSAMXG00000002431	rbfox1	72	77.866	Astyanax_mexicanus
ENSODEG00000013166	RBFOX1	99	94.416	ENSBTAG00000007210	RBFOX1	98	97.436	Bos_taurus
ENSODEG00000013166	RBFOX1	100	97.129	ENSCJAG00000017351	RBFOX1	100	97.129	Callithrix_jacchus
ENSODEG00000013166	RBFOX1	100	96.890	ENSCAFG00000019082	RBFOX1	100	96.890	Canis_familiaris
ENSODEG00000013166	RBFOX1	71	96.284	ENSCAFG00020024881	RBFOX1	83	96.284	Canis_lupus_dingo
ENSODEG00000013166	RBFOX1	99	94.416	ENSCHIG00000023549	RBFOX1	98	97.436	Capra_hircus
ENSODEG00000013166	RBFOX1	98	96.401	ENSTSYG00000005334	RBFOX1	100	98.458	Carlito_syrichta
ENSODEG00000013166	RBFOX1	100	98.565	ENSCAPG00000017669	RBFOX1	100	98.565	Cavia_aperea
ENSODEG00000013166	RBFOX1	100	98.565	ENSCPOG00000011314	RBFOX1	100	98.565	Cavia_porcellus
ENSODEG00000013166	RBFOX1	100	97.129	ENSCCAG00000023031	RBFOX1	100	97.129	Cebus_capucinus
ENSODEG00000013166	RBFOX1	100	97.129	ENSCATG00000033816	RBFOX1	100	97.129	Cercocebus_atys
ENSODEG00000013166	RBFOX1	100	99.043	ENSCLAG00000012761	RBFOX1	100	99.043	Chinchilla_lanigera
ENSODEG00000013166	RBFOX1	84	95.482	ENSCSAG00000008739	RBFOX1	89	94.925	Chlorocebus_sabaeus
ENSODEG00000013166	RBFOX1	100	75.120	ENSCHOG00000012843	RBFOX1	100	75.120	Choloepus_hoffmanni
ENSODEG00000013166	RBFOX1	98	93.814	ENSCPBG00000026626	RBFOX1	98	93.590	Chrysemys_picta_bellii
ENSODEG00000013166	RBFOX1	100	97.129	ENSCANG00000033125	RBFOX1	100	97.129	Colobus_angolensis_palliatus
ENSODEG00000013166	RBFOX1	100	96.725	ENSCGRG00001013729	Rbfox1	100	96.725	Cricetulus_griseus_chok1gshd
ENSODEG00000013166	RBFOX1	100	96.725	ENSCGRG00000003272	Rbfox1	100	96.725	Cricetulus_griseus_crigri
ENSODEG00000013166	RBFOX1	95	71.537	ENSCSEG00000008840	rbfox1	100	71.537	Cynoglossus_semilaevis
ENSODEG00000013166	RBFOX1	100	79.899	ENSDARG00000014746	rbfox1	100	85.366	Danio_rerio
ENSODEG00000013166	RBFOX1	98	97.179	ENSDNOG00000043612	RBFOX1	94	97.179	Dasypus_novemcinctus
ENSODEG00000013166	RBFOX1	99	94.416	ENSDORG00000010024	Rbfox1	100	92.822	Dipodomys_ordii
ENSODEG00000013166	RBFOX1	100	77.751	ENSETEG00000003771	RBFOX1	100	77.751	Echinops_telfairi
ENSODEG00000013166	RBFOX1	98	97.943	ENSEASG00005011599	RBFOX1	98	98.205	Equus_asinus_asinus
ENSODEG00000013166	RBFOX1	97	97.531	ENSECAG00000012667	RBFOX1	98	97.531	Equus_caballus
ENSODEG00000013166	RBFOX1	84	65.560	ENSELUG00000013096	rbfox1	100	49.373	Esox_lucius
ENSODEG00000013166	RBFOX1	98	97.172	ENSFCAG00000025322	RBFOX1	96	90.431	Felis_catus
ENSODEG00000013166	RBFOX1	82	93.808	ENSFALG00000004027	RBFOX1	100	91.892	Ficedula_albicollis
ENSODEG00000013166	RBFOX1	100	98.804	ENSFDAG00000007388	RBFOX1	100	98.804	Fukomys_damarensis
ENSODEG00000013166	RBFOX1	100	91.866	ENSGALG00000034325	RBFOX1	100	91.866	Gallus_gallus
ENSODEG00000013166	RBFOX1	100	91.148	ENSGAGG00000023681	RBFOX1	100	93.899	Gopherus_agassizii
ENSODEG00000013166	RBFOX1	100	97.129	ENSGGOG00000016871	-	100	97.129	Gorilla_gorilla
ENSODEG00000013166	RBFOX1	100	98.565	ENSHGLG00000016944	RBFOX1	100	98.565	Heterocephalus_glaber_female
ENSODEG00000013166	RBFOX1	100	98.565	ENSHGLG00100003272	RBFOX1	100	98.565	Heterocephalus_glaber_male
ENSODEG00000013166	RBFOX1	85	70.893	ENSHCOG00000016419	rbfox1	91	70.977	Hippocampus_comes
ENSODEG00000013166	RBFOX1	95	82.759	ENSIPUG00000015215	rbfox1	100	82.759	Ictalurus_punctatus
ENSODEG00000013166	RBFOX1	100	96.977	ENSSTOG00000000322	RBFOX1	100	96.977	Ictidomys_tridecemlineatus
ENSODEG00000013166	RBFOX1	100	93.955	ENSJJAG00000002575	Rbfox1	100	93.955	Jaculus_jaculus
ENSODEG00000013166	RBFOX1	99	73.449	ENSLBEG00000014659	rbfox1	99	73.201	Labrus_bergylta
ENSODEG00000013166	RBFOX1	98	85.751	ENSLOCG00000006675	rbfox1	99	85.751	Lepisosteus_oculatus
ENSODEG00000013166	RBFOX1	78	98.701	ENSLAFG00000011480	RBFOX1	100	99.026	Loxodonta_africana
ENSODEG00000013166	RBFOX1	100	97.368	ENSMFAG00000036447	RBFOX1	100	97.368	Macaca_fascicularis
ENSODEG00000013166	RBFOX1	100	97.368	ENSMMUG00000003458	RBFOX1	100	97.368	Macaca_mulatta
ENSODEG00000013166	RBFOX1	100	97.368	ENSMNEG00000032034	RBFOX1	100	97.368	Macaca_nemestrina
ENSODEG00000013166	RBFOX1	100	97.129	ENSMLEG00000015382	RBFOX1	100	97.129	Mandrillus_leucophaeus
ENSODEG00000013166	RBFOX1	95	75.255	ENSMAMG00000003142	rbfox1	100	75.765	Mastacembelus_armatus
ENSODEG00000013166	RBFOX1	71	87.544	ENSMGAG00000008606	RBFOX1	96	86.786	Meleagris_gallopavo
ENSODEG00000013166	RBFOX1	99	56.061	ENSMAUG00000020570	Rbfox1	99	55.051	Mesocricetus_auratus
ENSODEG00000013166	RBFOX1	98	90.488	ENSMICG00000034286	RBFOX1	100	88.586	Microcebus_murinus
ENSODEG00000013166	RBFOX1	100	96.725	ENSMOCG00000020932	Rbfox1	100	96.725	Microtus_ochrogaster
ENSODEG00000013166	RBFOX1	87	71.304	ENSMMOG00000009716	rbfox1	86	71.681	Mola_mola
ENSODEG00000013166	RBFOX1	81	93.730	ENSMODG00000005826	RBFOX1	90	93.730	Monodelphis_domestica
ENSODEG00000013166	RBFOX1	100	76.039	ENSMALG00000003337	rbfox1	100	76.039	Monopterus_albus
ENSODEG00000013166	RBFOX1	100	96.977	MGP_CAROLIEiJ_G0020427	Rbfox1	100	96.977	Mus_caroli
ENSODEG00000013166	RBFOX1	100	96.725	ENSMUSG00000008658	Rbfox1	100	99.248	Mus_musculus
ENSODEG00000013166	RBFOX1	100	96.977	MGP_PahariEiJ_G0016135	Rbfox1	100	96.977	Mus_pahari
ENSODEG00000013166	RBFOX1	100	96.474	MGP_SPRETEiJ_G0021321	Rbfox1	100	96.474	Mus_spretus
ENSODEG00000013166	RBFOX1	84	95.166	ENSMPUG00000014822	RBFOX1	91	92.500	Mustela_putorius_furo
ENSODEG00000013166	RBFOX1	78	99.349	ENSMLUG00000015896	RBFOX1	100	99.349	Myotis_lucifugus
ENSODEG00000013166	RBFOX1	100	96.651	ENSNGAG00000023276	Rbfox1	100	97.165	Nannospalax_galili
ENSODEG00000013166	RBFOX1	98	60.870	ENSNBRG00000011084	rbfox1	94	61.259	Neolamprologus_brichardi
ENSODEG00000013166	RBFOX1	100	96.890	ENSNLEG00000010017	-	100	96.890	Nomascus_leucogenys
ENSODEG00000013166	RBFOX1	100	79.187	ENSMEUG00000012525	RBFOX1	100	79.187	Notamacropus_eugenii
ENSODEG00000013166	RBFOX1	100	78.708	ENSOPRG00000006199	-	100	77.512	Ochotona_princeps
ENSODEG00000013166	RBFOX1	84	92.771	ENSOANG00000002379	RBFOX1	89	92.239	Ornithorhynchus_anatinus
ENSODEG00000013166	RBFOX1	55	96.774	ENSOCUG00000001205	-	100	93.778	Oryctolagus_cuniculus
ENSODEG00000013166	RBFOX1	100	96.465	ENSOGAG00000025535	RBFOX1	100	96.222	Otolemur_garnettii
ENSODEG00000013166	RBFOX1	63	84.000	ENSOARG00000005135	RBFOX1	100	83.267	Ovis_aries
ENSODEG00000013166	RBFOX1	98	97.938	ENSPPAG00000036238	-	100	97.938	Pan_paniscus
ENSODEG00000013166	RBFOX1	100	96.651	ENSPPRG00000006546	RBFOX1	100	96.651	Panthera_pardus
ENSODEG00000013166	RBFOX1	100	85.139	ENSPTIG00000021154	RBFOX1	99	85.567	Panthera_tigris_altaica
ENSODEG00000013166	RBFOX1	100	97.129	ENSPTRG00000007744	RBFOX1	100	97.129	Pan_troglodytes
ENSODEG00000013166	RBFOX1	100	97.129	ENSPANG00000026500	RBFOX1	100	97.129	Papio_anubis
ENSODEG00000013166	RBFOX1	74	82.534	ENSPKIG00000019353	rbfox1	86	82.759	Paramormyrops_kingsleyae
ENSODEG00000013166	RBFOX1	100	81.203	ENSPKIG00000009667	-	95	82.609	Paramormyrops_kingsleyae
ENSODEG00000013166	RBFOX1	99	92.875	ENSPSIG00000006523	RBFOX1	98	93.333	Pelodiscus_sinensis
ENSODEG00000013166	RBFOX1	100	96.977	ENSPEMG00000017607	Rbfox1	100	96.977	Peromyscus_maniculatus_bairdii
ENSODEG00000013166	RBFOX1	73	92.414	ENSPCIG00000026887	RBFOX1	100	92.414	Phascolarctos_cinereus
ENSODEG00000013166	RBFOX1	84	95.770	ENSPPYG00000007079	-	91	93.056	Pongo_abelii
ENSODEG00000013166	RBFOX1	90	88.360	ENSPCAG00000002630	RBFOX1	100	88.360	Procavia_capensis
ENSODEG00000013166	RBFOX1	100	97.129	ENSPCOG00000025687	RBFOX1	100	97.129	Propithecus_coquereli
ENSODEG00000013166	RBFOX1	100	93.301	ENSPVAG00000013467	RBFOX1	100	93.301	Pteropus_vampyrus
ENSODEG00000013166	RBFOX1	95	79.798	ENSPNAG00000023109	rbfox1	100	79.798	Pygocentrus_nattereri
ENSODEG00000013166	RBFOX1	98	96.401	ENSRNOG00000002827	Rbfox1	100	94.258	Rattus_norvegicus
ENSODEG00000013166	RBFOX1	98	97.938	ENSRBIG00000044478	RBFOX1	100	97.938	Rhinopithecus_bieti
ENSODEG00000013166	RBFOX1	100	97.129	ENSRROG00000044411	RBFOX1	100	97.129	Rhinopithecus_roxellana
ENSODEG00000013166	RBFOX1	99	96.947	ENSSBOG00000033726	RBFOX1	98	97.436	Saimiri_boliviensis_boliviensis
ENSODEG00000013166	RBFOX1	100	91.184	ENSSHAG00000009257	RBFOX1	100	91.184	Sarcophilus_harrisii
ENSODEG00000013166	RBFOX1	98	67.939	ENSSFOG00015023675	rbfox1	93	87.778	Scleropages_formosus
ENSODEG00000013166	RBFOX1	88	70.950	ENSSFOG00015009955	-	87	68.984	Scleropages_formosus
ENSODEG00000013166	RBFOX1	98	76.847	ENSSMAG00000015505	rbfox1	93	76.413	Scophthalmus_maximus
ENSODEG00000013166	RBFOX1	98	74.745	ENSSDUG00000016413	rbfox1	99	74.490	Seriola_dumerili
ENSODEG00000013166	RBFOX1	85	72.647	ENSSLDG00000009353	rbfox1	97	72.321	Seriola_lalandi_dorsalis
ENSODEG00000013166	RBFOX1	85	81.765	ENSSPUG00000009732	RBFOX1	87	81.818	Sphenodon_punctatus
ENSODEG00000013166	RBFOX1	98	76.355	ENSSPAG00000009723	rbfox1	100	76.108	Stegastes_partitus
ENSODEG00000013166	RBFOX1	97	96.543	ENSSSCG00000007917	RBFOX1	98	96.543	Sus_scrofa
ENSODEG00000013166	RBFOX1	98	94.087	ENSTGUG00000004562	RBFOX1	100	94.087	Taeniopygia_guttata
ENSODEG00000013166	RBFOX1	98	75.616	ENSTRUG00000020940	rbfox1	99	75.616	Takifugu_rubripes
ENSODEG00000013166	RBFOX1	67	57.006	ENSTNIG00000002567	rbfox1	100	58.599	Tetraodon_nigroviridis
ENSODEG00000013166	RBFOX1	81	82.759	ENSTBEG00000009169	-	81	82.759	Tupaia_belangeri
ENSODEG00000013166	RBFOX1	100	96.651	ENSTTRG00000005700	RBFOX1	100	96.651	Tursiops_truncatus
ENSODEG00000013166	RBFOX1	100	90.932	ENSUAMG00000024633	RBFOX1	100	90.932	Ursus_americanus
ENSODEG00000013166	RBFOX1	100	82.368	ENSUMAG00000003579	RBFOX1	100	82.368	Ursus_maritimus
ENSODEG00000013166	RBFOX1	81	99.026	ENSVPAG00000001284	RBFOX1	81	99.026	Vicugna_pacos
ENSODEG00000013166	RBFOX1	98	97.172	ENSVVUG00000017311	RBFOX1	96	90.431	Vulpes_vulpes