EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000013256 (Gene tree)
Gene ID: 101571952
Gene Symbol: SRL
Alias: -
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 40761 bases
Position: chrJH651536.1:7358755-7399515
Accession: 101571952
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000017977	MMR_HSR1	PF01926.23	1.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000018206	SRL-201	1419	XM_004627816	ENSODEP00000017977	472 (aa)	XP_004627873	-

Gene Model

Click here to download ENSODEG00000013256's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000013256's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000013256	SRL	79	32.708	ENSODEG00000008117	EHD3	67	34.417
ENSODEG00000013256	SRL	77	34.247	ENSODEG00000014527	EHD1	67	34.247
ENSODEG00000013256	SRL	82	32.648	ENSODEG00000006641	EHD2	68	32.812
ENSODEG00000013256	SRL	83	31.899	ENSODEG00000016665	EHD4	55	36.120

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000013256	SRL	100	96.195	ENSG00000185739	SRL	100	97.448	Homo_sapiens
ENSODEG00000013256	SRL	100	80.932	ENSAPOG00000018093	srl	100	83.559	Acanthochromis_polyacanthus
ENSODEG00000013256	SRL	94	76.697	ENSAPOG00000012432	SRL	98	75.168	Acanthochromis_polyacanthus
ENSODEG00000013256	SRL	98	95.238	ENSAMEG00000010862	SRL	51	96.460	Ailuropoda_melanoleuca
ENSODEG00000013256	SRL	94	75.901	ENSACIG00000015419	SRL	99	75.901	Amphilophus_citrinellus
ENSODEG00000013256	SRL	94	83.937	ENSACIG00000015799	srl	98	83.937	Amphilophus_citrinellus
ENSODEG00000013256	SRL	92	84.332	ENSAOCG00000007574	srl	100	84.332	Amphiprion_ocellaris
ENSODEG00000013256	SRL	97	74.565	ENSAOCG00000017049	SRL	99	74.561	Amphiprion_ocellaris
ENSODEG00000013256	SRL	100	81.144	ENSAPEG00000006911	srl	97	82.637	Amphiprion_percula
ENSODEG00000013256	SRL	97	71.024	ENSAPEG00000006533	SRL	99	70.769	Amphiprion_percula
ENSODEG00000013256	SRL	94	74.286	ENSATEG00000009643	SRL	52	73.187	Anabas_testudineus
ENSODEG00000013256	SRL	100	80.932	ENSATEG00000024315	srl	97	82.637	Anabas_testudineus
ENSODEG00000013256	SRL	100	86.066	ENSACAG00000016380	SRL	85	89.224	Anolis_carolinensis
ENSODEG00000013256	SRL	94	73.626	ENSACLG00000024674	SRL	57	72.527	Astatotilapia_calliptera
ENSODEG00000013256	SRL	98	81.681	ENSACLG00000027685	srl	97	83.937	Astatotilapia_calliptera
ENSODEG00000013256	SRL	88	78.313	ENSAMXG00000038693	SRL	100	73.951	Astyanax_mexicanus
ENSODEG00000013256	SRL	99	80.042	ENSAMXG00000018789	srl	86	83.673	Astyanax_mexicanus
ENSODEG00000013256	SRL	96	96.026	ENSBTAG00000001078	SRL	57	96.026	Bos_taurus
ENSODEG00000013256	SRL	94	97.291	ENSCJAG00000019750	SRL	97	96.499	Callithrix_jacchus
ENSODEG00000013256	SRL	98	95.445	ENSCAFG00000019233	SRL	84	96.239	Canis_familiaris
ENSODEG00000013256	SRL	96	95.824	ENSCAFG00020025024	SRL	56	95.824	Canis_lupus_dingo
ENSODEG00000013256	SRL	99	94.839	ENSCHIG00000017927	SRL	57	96.026	Capra_hircus
ENSODEG00000013256	SRL	100	96.195	ENSTSYG00000007919	SRL	100	97.912	Carlito_syrichta
ENSODEG00000013256	SRL	100	98.305	ENSCPOG00000012643	SRL	100	98.305	Cavia_porcellus
ENSODEG00000013256	SRL	94	90.971	ENSCCAG00000032646	SRL	100	97.889	Cebus_capucinus
ENSODEG00000013256	SRL	100	96.406	ENSCATG00000032227	-	97	96.937	Cercocebus_atys
ENSODEG00000013256	SRL	100	98.517	ENSCLAG00000016242	SRL	100	98.517	Chinchilla_lanigera
ENSODEG00000013256	SRL	82	97.662	ENSCHOG00000001618	SRL	52	97.662	Choloepus_hoffmanni
ENSODEG00000013256	SRL	96	94.041	ENSCPBG00000026371	SRL	95	89.417	Chrysemys_picta_bellii
ENSODEG00000013256	SRL	88	60.432	ENSCING00000005231	-	91	60.837	Ciona_intestinalis
ENSODEG00000013256	SRL	100	96.195	ENSCANG00000035872	SRL	100	97.448	Colobus_angolensis_palliatus
ENSODEG00000013256	SRL	100	97.246	ENSCGRG00001016630	Srl	100	97.246	Cricetulus_griseus_chok1gshd
ENSODEG00000013256	SRL	100	97.246	ENSCGRG00000005458	Srl	100	97.246	Cricetulus_griseus_crigri
ENSODEG00000013256	SRL	100	80.932	ENSCSEG00000016151	srl	97	82.379	Cynoglossus_semilaevis
ENSODEG00000013256	SRL	99	70.551	ENSCSEG00000011866	SRL	91	72.210	Cynoglossus_semilaevis
ENSODEG00000013256	SRL	100	80.720	ENSCVAG00000003513	srl	96	83.710	Cyprinodon_variegatus
ENSODEG00000013256	SRL	94	75.664	ENSCVAG00000022465	SRL	60	74.779	Cyprinodon_variegatus
ENSODEG00000013256	SRL	80	76.823	ENSDARG00000112959	CABZ01072309.1	100	76.823	Danio_rerio
ENSODEG00000013256	SRL	100	81.568	ENSDARG00000104587	srl	94	85.294	Danio_rerio
ENSODEG00000013256	SRL	96	96.231	ENSDNOG00000011643	SRL	54	95.815	Dasypus_novemcinctus
ENSODEG00000013256	SRL	100	97.034	ENSDORG00000014807	Srl	100	97.034	Dipodomys_ordii
ENSODEG00000013256	SRL	78	65.508	ENSEBUG00000015937	srl	88	68.103	Eptatretus_burgeri
ENSODEG00000013256	SRL	95	96.000	ENSEASG00005000942	SRL	55	95.585	Equus_asinus_asinus
ENSODEG00000013256	SRL	99	95.127	ENSECAG00000024219	SRL	96	95.604	Equus_caballus
ENSODEG00000013256	SRL	100	77.618	ENSELUG00000015616	srl	94	81.140	Esox_lucius
ENSODEG00000013256	SRL	100	94.292	ENSFCAG00000022075	SRL	96	95.614	Felis_catus
ENSODEG00000013256	SRL	96	89.845	ENSFALG00000004328	SRL	64	90.244	Ficedula_albicollis
ENSODEG00000013256	SRL	100	97.458	ENSFDAG00000006199	SRL	100	97.458	Fukomys_damarensis
ENSODEG00000013256	SRL	100	80.297	ENSFHEG00000011239	srl	97	81.938	Fundulus_heteroclitus
ENSODEG00000013256	SRL	100	71.311	ENSFHEG00000011854	SRL	98	77.149	Fundulus_heteroclitus
ENSODEG00000013256	SRL	93	80.574	ENSGMOG00000014954	srl	99	80.574	Gadus_morhua
ENSODEG00000013256	SRL	99	89.619	ENSGALG00000038884	SRL	95	90.909	Gallus_gallus
ENSODEG00000013256	SRL	100	80.297	ENSGAFG00000000010	srl	97	83.146	Gambusia_affinis
ENSODEG00000013256	SRL	94	77.149	ENSGAFG00000016984	SRL	98	77.149	Gambusia_affinis
ENSODEG00000013256	SRL	93	81.678	ENSGACG00000011332	srl	99	81.678	Gasterosteus_aculeatus
ENSODEG00000013256	SRL	100	95.983	ENSGGOG00000011312	-	97	96.937	Gorilla_gorilla
ENSODEG00000013256	SRL	98	81.681	ENSHBUG00000007581	srl	97	83.937	Haplochromis_burtoni
ENSODEG00000013256	SRL	94	73.407	ENSHBUG00000015710	SRL	57	73.407	Haplochromis_burtoni
ENSODEG00000013256	SRL	100	97.881	ENSHGLG00000015271	SRL	100	97.881	Heterocephalus_glaber_female
ENSODEG00000013256	SRL	100	97.881	ENSHGLG00100019378	SRL	100	97.881	Heterocephalus_glaber_male
ENSODEG00000013256	SRL	95	72.985	ENSHCOG00000001012	SRL	51	71.895	Hippocampus_comes
ENSODEG00000013256	SRL	99	80.000	ENSHCOG00000008687	srl	98	83.258	Hippocampus_comes
ENSODEG00000013256	SRL	92	69.954	ENSIPUG00000011609	SRL	95	68.807	Ictalurus_punctatus
ENSODEG00000013256	SRL	100	79.237	ENSIPUG00000012513	srl	95	81.798	Ictalurus_punctatus
ENSODEG00000013256	SRL	100	97.034	ENSSTOG00000021151	-	100	97.034	Ictidomys_tridecemlineatus
ENSODEG00000013256	SRL	100	97.034	ENSJJAG00000016400	Srl	100	97.034	Jaculus_jaculus
ENSODEG00000013256	SRL	98	81.169	ENSKMAG00000014115	srl	93	85.986	Kryptolebias_marmoratus
ENSODEG00000013256	SRL	93	77.098	ENSKMAG00000019537	SRL	100	77.098	Kryptolebias_marmoratus
ENSODEG00000013256	SRL	97	74.565	ENSLBEG00000013811	SRL	98	74.342	Labrus_bergylta
ENSODEG00000013256	SRL	100	80.932	ENSLBEG00000026643	srl	96	81.978	Labrus_bergylta
ENSODEG00000013256	SRL	100	80.579	ENSLACG00000002825	SRL	98	85.843	Latimeria_chalumnae
ENSODEG00000013256	SRL	99	82.090	ENSLOCG00000002644	srl	94	85.294	Lepisosteus_oculatus
ENSODEG00000013256	SRL	95	96.222	ENSLAFG00000006329	SRL	51	95.796	Loxodonta_africana
ENSODEG00000013256	SRL	91	97.448	ENSMFAG00000037383	SRL	100	97.448	Macaca_fascicularis
ENSODEG00000013256	SRL	98	96.312	ENSMNEG00000019236	-	97	96.312	Macaca_nemestrina
ENSODEG00000013256	SRL	100	88.584	ENSMLEG00000032156	SRL	96	88.840	Mandrillus_leucophaeus
ENSODEG00000013256	SRL	93	74.449	ENSMAMG00000013756	SRL	53	74.342	Mastacembelus_armatus
ENSODEG00000013256	SRL	99	80.426	ENSMAMG00000023322	srl	94	84.389	Mastacembelus_armatus
ENSODEG00000013256	SRL	98	81.681	ENSMZEG00005004548	srl	97	83.937	Maylandia_zebra
ENSODEG00000013256	SRL	94	73.626	ENSMZEG00005004010	SRL	57	72.527	Maylandia_zebra
ENSODEG00000013256	SRL	96	90.909	ENSMGAG00000009342	SRL	95	92.553	Meleagris_gallopavo
ENSODEG00000013256	SRL	96	95.614	ENSMICG00000032307	SRL	97	95.624	Microcebus_murinus
ENSODEG00000013256	SRL	100	96.398	ENSMOCG00000008208	Srl	100	96.398	Microtus_ochrogaster
ENSODEG00000013256	SRL	93	73.187	ENSMMOG00000021572	SRL	99	73.187	Mola_mola
ENSODEG00000013256	SRL	94	83.710	ENSMMOG00000013970	srl	98	83.710	Mola_mola
ENSODEG00000013256	SRL	96	96.468	ENSMODG00000016380	-	51	96.468	Monodelphis_domestica
ENSODEG00000013256	SRL	96	81.938	ENSMALG00000005039	srl	98	83.484	Monopterus_albus
ENSODEG00000013256	SRL	89	76.134	ENSMALG00000000670	SRL	98	75.179	Monopterus_albus
ENSODEG00000013256	SRL	100	97.669	MGP_CAROLIEiJ_G0020400	Srl	100	97.669	Mus_caroli
ENSODEG00000013256	SRL	100	97.669	ENSMUSG00000022519	Srl	100	97.669	Mus_musculus
ENSODEG00000013256	SRL	100	97.669	MGP_SPRETEiJ_G0021294	Srl	100	97.669	Mus_spretus
ENSODEG00000013256	SRL	96	96.460	ENSMPUG00000015025	SRL	55	96.460	Mustela_putorius_furo
ENSODEG00000013256	SRL	98	95.011	ENSMLUG00000030733	SRL	58	95.011	Myotis_lucifugus
ENSODEG00000013256	SRL	100	97.669	ENSNGAG00000019741	Srl	100	97.669	Nannospalax_galili
ENSODEG00000013256	SRL	98	81.681	ENSNBRG00000023775	srl	94	83.937	Neolamprologus_brichardi
ENSODEG00000013256	SRL	94	73.626	ENSNBRG00000002422	SRL	61	69.231	Neolamprologus_brichardi
ENSODEG00000013256	SRL	100	89.641	ENSNLEG00000029051	SRL	96	90.153	Nomascus_leucogenys
ENSODEG00000013256	SRL	97	89.565	ENSOPRG00000000477	-	53	90.308	Ochotona_princeps
ENSODEG00000013256	SRL	97	82.135	ENSONIG00000005192	srl	94	84.163	Oreochromis_niloticus
ENSODEG00000013256	SRL	97	95.870	ENSOCUG00000025140	SRL	50	96.916	Oryctolagus_cuniculus
ENSODEG00000013256	SRL	96	74.779	ENSORLG00000015064	SRL	99	74.779	Oryzias_latipes
ENSODEG00000013256	SRL	100	79.873	ENSORLG00000008291	srl	92	85.309	Oryzias_latipes
ENSODEG00000013256	SRL	100	80.085	ENSORLG00020019784	srl	79	85.567	Oryzias_latipes_hni
ENSODEG00000013256	SRL	96	75.000	ENSORLG00020018173	SRL	99	75.000	Oryzias_latipes_hni
ENSODEG00000013256	SRL	96	75.221	ENSORLG00015019063	SRL	99	75.221	Oryzias_latipes_hsok
ENSODEG00000013256	SRL	100	79.661	ENSORLG00015009342	srl	93	81.278	Oryzias_latipes_hsok
ENSODEG00000013256	SRL	94	73.304	ENSOMEG00000005682	SRL	53	73.626	Oryzias_melastigma
ENSODEG00000013256	SRL	100	80.297	ENSOMEG00000010006	srl	98	83.409	Oryzias_melastigma
ENSODEG00000013256	SRL	96	95.374	ENSOGAG00000029266	SRL	55	95.374	Otolemur_garnettii
ENSODEG00000013256	SRL	99	94.839	ENSOARG00000003074	SRL	57	96.231	Ovis_aries
ENSODEG00000013256	SRL	97	96.725	ENSPPAG00000024919	-	100	97.448	Pan_paniscus
ENSODEG00000013256	SRL	100	94.503	ENSPPRG00000010274	SRL	100	97.216	Panthera_pardus
ENSODEG00000013256	SRL	100	94.503	ENSPTIG00000015162	SRL	100	97.216	Panthera_tigris_altaica
ENSODEG00000013256	SRL	100	96.195	ENSPTRG00000007712	SRL	100	97.448	Pan_troglodytes
ENSODEG00000013256	SRL	98	96.095	ENSPANG00000013804	SRL	99	96.095	Papio_anubis
ENSODEG00000013256	SRL	100	80.550	ENSPKIG00000006405	srl	93	84.163	Paramormyrops_kingsleyae
ENSODEG00000013256	SRL	100	74.153	ENSPKIG00000024974	SRL	88	76.923	Paramormyrops_kingsleyae
ENSODEG00000013256	SRL	96	90.308	ENSPSIG00000008586	SRL	51	90.308	Pelodiscus_sinensis
ENSODEG00000013256	SRL	94	73.529	ENSPMGG00000023505	-	99	72.809	Periophthalmus_magnuspinnatus
ENSODEG00000013256	SRL	96	82.340	ENSPMGG00000021081	srl	97	82.340	Periophthalmus_magnuspinnatus
ENSODEG00000013256	SRL	100	97.034	ENSPEMG00000015842	Srl	100	97.034	Peromyscus_maniculatus_bairdii
ENSODEG00000013256	SRL	89	68.349	ENSPMAG00000004786	srl	99	68.119	Petromyzon_marinus
ENSODEG00000013256	SRL	96	95.787	ENSPCIG00000012128	SRL	98	95.787	Phascolarctos_cinereus
ENSODEG00000013256	SRL	100	78.719	ENSPFOG00000011408	srl	94	81.579	Poecilia_formosa
ENSODEG00000013256	SRL	94	76.697	ENSPLAG00000002932	SRL	98	75.566	Poecilia_latipinna
ENSODEG00000013256	SRL	94	83.371	ENSPLAG00000008017	srl	97	83.371	Poecilia_latipinna
ENSODEG00000013256	SRL	96	73.391	ENSPMEG00000005890	SRL	61	72.786	Poecilia_mexicana
ENSODEG00000013256	SRL	100	80.508	ENSPMEG00000006745	srl	97	83.371	Poecilia_mexicana
ENSODEG00000013256	SRL	100	80.085	ENSPREG00000007751	srl	100	82.483	Poecilia_reticulata
ENSODEG00000013256	SRL	94	77.828	ENSPREG00000000315	SRL	98	76.697	Poecilia_reticulata
ENSODEG00000013256	SRL	89	98.329	ENSPPYG00000007053	SRL	98	98.329	Pongo_abelii
ENSODEG00000013256	SRL	96	94.260	ENSPCAG00000003378	-	51	94.260	Procavia_capensis
ENSODEG00000013256	SRL	97	96.070	ENSPCOG00000023135	SRL	100	97.680	Propithecus_coquereli
ENSODEG00000013256	SRL	96	96.903	ENSPVAG00000006586	SRL	56	96.903	Pteropus_vampyrus
ENSODEG00000013256	SRL	98	81.681	ENSPNYG00000001200	srl	97	83.937	Pundamilia_nyererei
ENSODEG00000013256	SRL	94	73.626	ENSPNYG00000003423	SRL	57	72.527	Pundamilia_nyererei
ENSODEG00000013256	SRL	100	78.602	ENSPNAG00000023106	srl	94	82.127	Pygocentrus_nattereri
ENSODEG00000013256	SRL	97	74.892	ENSPNAG00000007361	-	93	75.110	Pygocentrus_nattereri
ENSODEG00000013256	SRL	97	96.288	ENSRNOG00000005269	Srl	51	96.288	Rattus_norvegicus
ENSODEG00000013256	SRL	97	95.870	ENSRBIG00000042358	SRL	51	96.491	Rhinopithecus_bieti
ENSODEG00000013256	SRL	94	97.291	ENSSBOG00000029273	SRL	97	96.499	Saimiri_boliviensis_boliviensis
ENSODEG00000013256	SRL	97	95.395	ENSSHAG00000011715	-	51	96.231	Sarcophilus_harrisii
ENSODEG00000013256	SRL	94	77.376	ENSSFOG00015021327	SRL	51	75.983	Scleropages_formosus
ENSODEG00000013256	SRL	100	78.926	ENSSFOG00015009773	srl	97	83.480	Scleropages_formosus
ENSODEG00000013256	SRL	93	73.523	ENSSMAG00000002232	SRL	50	72.308	Scophthalmus_maximus
ENSODEG00000013256	SRL	97	81.659	ENSSMAG00000016274	srl	99	82.018	Scophthalmus_maximus
ENSODEG00000013256	SRL	94	75.501	ENSSDUG00000009161	SRL	98	75.501	Seriola_dumerili
ENSODEG00000013256	SRL	94	84.389	ENSSDUG00000010808	srl	97	84.389	Seriola_dumerili
ENSODEG00000013256	SRL	96	82.819	ENSSLDG00000022024	srl	97	82.819	Seriola_lalandi_dorsalis
ENSODEG00000013256	SRL	94	75.055	ENSSLDG00000014601	SRL	99	75.165	Seriola_lalandi_dorsalis
ENSODEG00000013256	SRL	96	89.602	ENSSPUG00000016859	SRL	99	89.602	Sphenodon_punctatus
ENSODEG00000013256	SRL	100	81.356	ENSSPAG00000019105	srl	97	82.895	Stegastes_partitus
ENSODEG00000013256	SRL	95	75.947	ENSSPAG00000014254	SRL	99	74.833	Stegastes_partitus
ENSODEG00000013256	SRL	96	95.806	ENSSSCG00000007949	SRL	99	96.429	Sus_scrofa
ENSODEG00000013256	SRL	77	91.989	ENSTGUG00000016121	-	96	92.816	Taeniopygia_guttata
ENSODEG00000013256	SRL	96	89.451	ENSTGUG00000003951	-	99	89.451	Taeniopygia_guttata
ENSODEG00000013256	SRL	100	80.932	ENSTRUG00000006005	srl	97	82.159	Takifugu_rubripes
ENSODEG00000013256	SRL	89	75.656	ENSTRUG00000013310	SRL	55	75.656	Takifugu_rubripes
ENSODEG00000013256	SRL	96	81.938	ENSTNIG00000009739	srl	97	81.938	Tetraodon_nigroviridis
ENSODEG00000013256	SRL	96	96.681	ENSUAMG00000005701	SRL	56	96.681	Ursus_americanus
ENSODEG00000013256	SRL	96	96.460	ENSUMAG00000002574	SRL	56	96.460	Ursus_maritimus
ENSODEG00000013256	SRL	96	96.035	ENSVVUG00000016331	-	50	96.035	Vulpes_vulpes
ENSODEG00000013256	SRL	96	88.938	ENSXETG00000017313	srl	100	88.938	Xenopus_tropicalis
ENSODEG00000013256	SRL	96	75.831	ENSXCOG00000014584	SRL	100	75.831	Xiphophorus_couchianus
ENSODEG00000013256	SRL	89	85.511	ENSXCOG00000010424	srl	97	85.511	Xiphophorus_couchianus
ENSODEG00000013256	SRL	100	80.297	ENSXMAG00000004625	srl	92	82.159	Xiphophorus_maculatus
ENSODEG00000013256	SRL	95	73.866	ENSXMAG00000027598	SRL	63	73.434	Xiphophorus_maculatus