EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000013478 (Gene tree)
Gene ID: 101562752
Gene Symbol: -
Alias: -
Full Name: small nuclear ribonucleoprotein polypeptide N
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 5462 bases
Position: chrJH651517.1:87599-93060
Accession: 101562752
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000018296	LSM	PF01423.22	6.6e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000018528	-	723	XM_004623439	ENSODEP00000018296	240 (aa)	XP_004623496	UPI00033337F7

Gene Model

Click here to download ENSODEG00000013478's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000013478's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000013478	-	92	92.760	ENSODEG00000004305	-	96	92.760
ENSODEG00000013478	-	82	89.286	ENSODEG00000016060	-	90	89.202
ENSODEG00000013478	-	98	81.624	ENSODEG00000016065	-	87	86.957
ENSODEG00000013478	-	95	99.563	ENSODEG00000019708	-	96	99.563
ENSODEG00000013478	-	100	99.583	ENSODEG00000020110	-	100	99.583

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000013478	-	100	99.583	ENSG00000128739	SNRPN	100	100.000	Homo_sapiens
ENSODEG00000013478	-	99	99.163	ENSAMEG00000007034	SNRPN	98	99.163	Ailuropoda_melanoleuca
ENSODEG00000013478	-	100	99.583	ENSANAG00000034241	SNRPN	100	99.583	Aotus_nancymaae
ENSODEG00000013478	-	100	99.167	ENSBTAG00000008251	SNRPN	100	99.167	Bos_taurus
ENSODEG00000013478	-	100	99.583	ENSCJAG00000003759	-	100	99.583	Callithrix_jacchus
ENSODEG00000013478	-	95	99.123	ENSCJAG00000042622	-	95	99.123	Callithrix_jacchus
ENSODEG00000013478	-	100	99.167	ENSCAFG00000010127	SNRPN	100	99.167	Canis_familiaris
ENSODEG00000013478	-	100	99.167	ENSCAFG00020024075	SNRPN	100	99.167	Canis_lupus_dingo
ENSODEG00000013478	-	100	99.167	ENSCHIG00000017477	SNRPN	100	99.167	Capra_hircus
ENSODEG00000013478	-	100	99.583	ENSTSYG00000005248	SNRPN	100	99.583	Carlito_syrichta
ENSODEG00000013478	-	100	99.583	ENSCAPG00000003047	SNRPN	100	99.583	Cavia_aperea
ENSODEG00000013478	-	100	99.583	ENSCPOG00000020270	SNRPN	100	99.583	Cavia_porcellus
ENSODEG00000013478	-	100	99.583	ENSCCAG00000024231	SNRPN	100	99.583	Cebus_capucinus
ENSODEG00000013478	-	100	99.583	ENSCATG00000032518	SNRPN	100	99.583	Cercocebus_atys
ENSODEG00000013478	-	100	99.583	ENSCLAG00000011376	SNRPN	100	99.583	Chinchilla_lanigera
ENSODEG00000013478	-	100	99.583	ENSCSAG00000006406	SNRPN	100	99.583	Chlorocebus_sabaeus
ENSODEG00000013478	-	98	99.145	ENSCHOG00000001846	SNRPN	88	99.145	Choloepus_hoffmanni
ENSODEG00000013478	-	100	99.583	ENSCANG00000041156	SNRPN	100	99.583	Colobus_angolensis_palliatus
ENSODEG00000013478	-	100	99.167	ENSCGRG00001004136	Snrpn	100	99.167	Cricetulus_griseus_chok1gshd
ENSODEG00000013478	-	100	99.167	ENSCGRG00000001621	Snrpn	100	99.167	Cricetulus_griseus_crigri
ENSODEG00000013478	-	72	92.486	ENSCVAG00000014193	SNRPN	69	92.857	Cyprinodon_variegatus
ENSODEG00000013478	-	99	98.745	ENSDNOG00000037060	SNRPN	98	98.745	Dasypus_novemcinctus
ENSODEG00000013478	-	100	100.000	ENSDORG00000004527	Snrpn	100	100.000	Dipodomys_ordii
ENSODEG00000013478	-	100	99.167	ENSEASG00005017871	SNRPN	100	99.167	Equus_asinus_asinus
ENSODEG00000013478	-	100	99.167	ENSECAG00000018148	SNRPN	100	99.167	Equus_caballus
ENSODEG00000013478	-	99	98.745	ENSEEUG00000007440	-	100	98.745	Erinaceus_europaeus
ENSODEG00000013478	-	100	99.167	ENSFCAG00000022298	-	100	99.167	Felis_catus
ENSODEG00000013478	-	100	100.000	ENSFDAG00000016578	-	100	100.000	Fukomys_damarensis
ENSODEG00000013478	-	76	86.339	ENSFDAG00000010528	-	86	86.339	Fukomys_damarensis
ENSODEG00000013478	-	74	76.836	ENSGMOG00000018161	SNRPN	74	76.190	Gadus_morhua
ENSODEG00000013478	-	100	99.583	ENSGGOG00000003988	SNRPN	100	99.583	Gorilla_gorilla
ENSODEG00000013478	-	90	73.023	ENSGGOG00000024469	-	69	83.942	Gorilla_gorilla
ENSODEG00000013478	-	89	91.080	ENSHGLG00000019812	-	89	90.610	Heterocephalus_glaber_female
ENSODEG00000013478	-	100	99.583	ENSHGLG00000011924	SNRPN	100	99.583	Heterocephalus_glaber_female
ENSODEG00000013478	-	90	80.465	ENSHGLG00000020936	-	88	79.343	Heterocephalus_glaber_female
ENSODEG00000013478	-	100	85.000	ENSHGLG00000002327	-	88	84.507	Heterocephalus_glaber_female
ENSODEG00000013478	-	100	82.500	ENSHGLG00100004881	-	88	82.629	Heterocephalus_glaber_male
ENSODEG00000013478	-	100	99.583	ENSHGLG00100016559	SNRPN	100	99.583	Heterocephalus_glaber_male
ENSODEG00000013478	-	89	91.080	ENSHGLG00100021056	-	89	90.610	Heterocephalus_glaber_male
ENSODEG00000013478	-	100	99.583	ENSSTOG00000001339	SNRPN	100	99.583	Ictidomys_tridecemlineatus
ENSODEG00000013478	-	99	100.000	ENSLAFG00000009458	SNRPN	99	100.000	Loxodonta_africana
ENSODEG00000013478	-	100	99.583	ENSMFAG00000042235	SNRPN	100	99.583	Macaca_fascicularis
ENSODEG00000013478	-	100	99.583	ENSMMUG00000023139	SNURF	100	99.583	Macaca_mulatta
ENSODEG00000013478	-	100	99.583	ENSMNEG00000031291	SNRPN	100	99.583	Macaca_nemestrina
ENSODEG00000013478	-	100	99.583	ENSMLEG00000038837	SNRPN	100	99.583	Mandrillus_leucophaeus
ENSODEG00000013478	-	92	85.909	ENSMGAG00000008696	SNRPN	92	85.909	Meleagris_gallopavo
ENSODEG00000013478	-	100	99.583	ENSMAUG00000000051	Snrpn	100	99.583	Mesocricetus_auratus
ENSODEG00000013478	-	100	99.583	ENSMICG00000042356	SNRPN	100	99.583	Microcebus_murinus
ENSODEG00000013478	-	100	99.583	ENSMOCG00000015350	Snrpn	100	99.583	Microtus_ochrogaster
ENSODEG00000013478	-	92	94.118	ENSMODG00000013926	-	92	94.118	Monodelphis_domestica
ENSODEG00000013478	-	100	99.583	MGP_CAROLIEiJ_G0029815	Snrpn	100	99.583	Mus_caroli
ENSODEG00000013478	-	100	99.583	ENSMUSG00000102252	Snrpn	100	99.583	Mus_musculus
ENSODEG00000013478	-	100	99.583	MGP_PahariEiJ_G0013040	Snrpn	100	99.583	Mus_pahari
ENSODEG00000013478	-	100	99.583	MGP_SPRETEiJ_G0030918	Snrpn	100	99.583	Mus_spretus
ENSODEG00000013478	-	100	99.167	ENSMPUG00000014638	-	100	99.167	Mustela_putorius_furo
ENSODEG00000013478	-	88	51.659	ENSMPUG00000007115	-	64	70.423	Mustela_putorius_furo
ENSODEG00000013478	-	99	99.582	ENSMLUG00000023361	-	98	99.582	Myotis_lucifugus
ENSODEG00000013478	-	85	61.275	ENSMLUG00000025849	-	73	63.057	Myotis_lucifugus
ENSODEG00000013478	-	95	62.719	ENSMLUG00000024428	-	62	71.111	Myotis_lucifugus
ENSODEG00000013478	-	100	99.583	ENSNGAG00000000181	Snrpn	100	99.583	Nannospalax_galili
ENSODEG00000013478	-	100	83.333	ENSNLEG00000001376	SNRPN	99	83.333	Nomascus_leucogenys
ENSODEG00000013478	-	100	99.170	ENSOCUG00000003532	-	100	99.170	Oryctolagus_cuniculus
ENSODEG00000013478	-	74	92.090	ENSORLG00020007490	SNRPN	69	93.452	Oryzias_latipes_hni
ENSODEG00000013478	-	74	92.090	ENSORLG00015003332	SNRPN	69	93.452	Oryzias_latipes_hsok
ENSODEG00000013478	-	74	92.655	ENSOMEG00000002066	SNRPN	69	94.048	Oryzias_melastigma
ENSODEG00000013478	-	100	99.583	ENSOGAG00000007392	SNRPN	100	99.583	Otolemur_garnettii
ENSODEG00000013478	-	100	99.167	ENSOARG00000009080	SNRPN	100	99.167	Ovis_aries
ENSODEG00000013478	-	100	99.583	ENSPPAG00000027650	SNRPN	100	99.583	Pan_paniscus
ENSODEG00000013478	-	97	68.803	ENSPPAG00000034049	-	65	79.720	Pan_paniscus
ENSODEG00000013478	-	85	63.902	ENSPPRG00000006957	-	73	70.861	Panthera_pardus
ENSODEG00000013478	-	100	99.167	ENSPPRG00000019878	-	100	99.167	Panthera_pardus
ENSODEG00000013478	-	100	98.750	ENSPTIG00000004537	SNRPN	100	98.750	Panthera_tigris_altaica
ENSODEG00000013478	-	97	69.231	ENSPTRG00000052400	-	65	80.420	Pan_troglodytes
ENSODEG00000013478	-	100	99.583	ENSPTRG00000006826	SNRPN	100	99.583	Pan_troglodytes
ENSODEG00000013478	-	100	99.583	ENSPANG00000020142	SNRPN	100	99.583	Papio_anubis
ENSODEG00000013478	-	89	95.327	ENSPEMG00000020979	-	89	95.305	Peromyscus_maniculatus_bairdii
ENSODEG00000013478	-	89	85.915	ENSPEMG00000013920	-	88	86.385	Peromyscus_maniculatus_bairdii
ENSODEG00000013478	-	100	99.583	ENSPEMG00000012911	-	100	99.583	Peromyscus_maniculatus_bairdii
ENSODEG00000013478	-	76	97.253	ENSPCIG00000004699	-	68	94.811	Phascolarctos_cinereus
ENSODEG00000013478	-	72	93.642	ENSPMEG00000020674	SNRPN	69	93.452	Poecilia_mexicana
ENSODEG00000013478	-	100	99.583	ENSPPYG00000006269	SNURF	100	99.583	Pongo_abelii
ENSODEG00000013478	-	100	99.583	ENSPCOG00000014231	SNRPN	100	99.583	Propithecus_coquereli
ENSODEG00000013478	-	100	99.583	ENSRNOG00000059764	Snrpn	100	99.583	Rattus_norvegicus
ENSODEG00000013478	-	100	99.583	ENSRBIG00000041765	SNRPN	100	99.583	Rhinopithecus_bieti
ENSODEG00000013478	-	100	99.583	ENSRROG00000035157	SNRPN	100	99.583	Rhinopithecus_roxellana
ENSODEG00000013478	-	100	99.583	ENSSBOG00000000110	-	100	99.583	Saimiri_boliviensis_boliviensis
ENSODEG00000013478	-	100	98.333	ENSSBOG00000024929	-	100	98.333	Saimiri_boliviensis_boliviensis
ENSODEG00000013478	-	76	96.721	ENSSHAG00000010257	-	87	94.366	Sarcophilus_harrisii
ENSODEG00000013478	-	99	78.243	ENSSARG00000000072	SNRPN	100	78.243	Sorex_araneus
ENSODEG00000013478	-	100	99.583	ENSSSCG00000028124	SNRPN	100	99.583	Sus_scrofa
ENSODEG00000013478	-	100	99.167	ENSTTRG00000010966	SNRPN	89	99.167	Tursiops_truncatus
ENSODEG00000013478	-	93	99.103	ENSUAMG00000016284	SNRPN	78	99.103	Ursus_americanus
ENSODEG00000013478	-	100	99.167	ENSUMAG00000025589	SNRPN	100	99.167	Ursus_maritimus
ENSODEG00000013478	-	95	99.127	ENSVVUG00000017971	SNRPN	94	99.127	Vulpes_vulpes