EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000013590 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 6257 bases
Position: chrJH651565.1:7158277-7164533
Accession: 101587691
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000018438	LSM	PF01423.22	3.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000018670	-	312	XM_004632936	ENSODEP00000018438	103 (aa)	XP_004632993	UPI000012E96B

Gene Model

Click here to download ENSODEG00000013590's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000013590's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000013590	-	100	79.612	ENSODEG00000008190	-	100	79.612
ENSODEG00000013590	-	69	36.620	ENSODEG00000011198	-	83	36.620
ENSODEG00000013590	-	100	93.204	ENSODEG00000018769	-	100	93.204
ENSODEG00000013590	-	72	35.526	ENSODEG00000000418	-	73	35.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000013590	-	100	100.000	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSODEG00000013590	-	91	95.745	ENSAPOG00000015573	lsm7	81	95.745	Acanthochromis_polyacanthus
ENSODEG00000013590	-	100	97.087	ENSAMEG00000005484	LSM7	100	97.087	Ailuropoda_melanoleuca
ENSODEG00000013590	-	95	94.898	ENSACIG00000006498	lsm7	78	94.898	Amphilophus_citrinellus
ENSODEG00000013590	-	98	95.050	ENSAOCG00000001077	lsm7	92	95.050	Amphiprion_ocellaris
ENSODEG00000013590	-	100	95.146	ENSAPEG00000000694	lsm7	100	95.146	Amphiprion_percula
ENSODEG00000013590	-	100	93.204	ENSAPEG00000024447	lsm7	92	95.050	Amphiprion_percula
ENSODEG00000013590	-	100	95.146	ENSATEG00000008557	lsm7	100	95.146	Anabas_testudineus
ENSODEG00000013590	-	100	91.262	ENSANAG00000022222	-	100	91.262	Aotus_nancymaae
ENSODEG00000013590	-	100	100.000	ENSANAG00000037196	-	100	100.000	Aotus_nancymaae
ENSODEG00000013590	-	100	94.175	ENSACLG00000021021	lsm7	100	94.175	Astatotilapia_calliptera
ENSODEG00000013590	-	100	95.146	ENSAMXG00000037622	lsm7	100	95.146	Astyanax_mexicanus
ENSODEG00000013590	-	100	100.000	ENSBTAG00000004521	LSM7	100	100.000	Bos_taurus
ENSODEG00000013590	-	97	57.000	WBGene00003081	lsm-7	96	57.000	Caenorhabditis_elegans
ENSODEG00000013590	-	54	100.000	ENSCJAG00000039713	-	68	100.000	Callithrix_jacchus
ENSODEG00000013590	-	98	99.010	ENSCAFG00000019409	LSM7	98	99.010	Canis_familiaris
ENSODEG00000013590	-	98	99.010	ENSCAFG00020018168	LSM7	74	99.010	Canis_lupus_dingo
ENSODEG00000013590	-	100	98.058	ENSCHIG00000023663	LSM7	100	98.058	Capra_hircus
ENSODEG00000013590	-	69	100.000	ENSCAPG00000014534	LSM7	100	100.000	Cavia_aperea
ENSODEG00000013590	-	100	100.000	ENSCPOG00000014025	LSM7	100	100.000	Cavia_porcellus
ENSODEG00000013590	-	98	100.000	ENSCCAG00000035456	LSM7	99	100.000	Cebus_capucinus
ENSODEG00000013590	-	100	100.000	ENSCATG00000023543	LSM7	100	100.000	Cercocebus_atys
ENSODEG00000013590	-	100	100.000	ENSCLAG00000011635	LSM7	100	100.000	Chinchilla_lanigera
ENSODEG00000013590	-	100	100.000	ENSCSAG00000011599	LSM7	100	100.000	Chlorocebus_sabaeus
ENSODEG00000013590	-	70	94.444	ENSCPBG00000021317	LSM7	77	94.444	Chrysemys_picta_bellii
ENSODEG00000013590	-	93	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSODEG00000013590	-	100	100.000	ENSCANG00000035525	LSM7	100	100.000	Colobus_angolensis_palliatus
ENSODEG00000013590	-	87	88.889	ENSCGRG00001016005	-	92	88.889	Cricetulus_griseus_chok1gshd
ENSODEG00000013590	-	100	99.029	ENSCGRG00001000807	-	100	99.029	Cricetulus_griseus_chok1gshd
ENSODEG00000013590	-	98	99.010	ENSCGRG00000014355	-	97	99.010	Cricetulus_griseus_crigri
ENSODEG00000013590	-	87	88.889	ENSCGRG00000006821	-	92	88.889	Cricetulus_griseus_crigri
ENSODEG00000013590	-	98	95.050	ENSCSEG00000014900	lsm7	86	95.050	Cynoglossus_semilaevis
ENSODEG00000013590	-	98	96.040	ENSCVAG00000021091	lsm7	94	96.040	Cyprinodon_variegatus
ENSODEG00000013590	-	100	95.146	ENSDARG00000058328	lsm7	100	95.146	Danio_rerio
ENSODEG00000013590	-	99	98.039	ENSDORG00000024460	Lsm7	100	98.039	Dipodomys_ordii
ENSODEG00000013590	-	94	76.531	FBgn0261068	LSm7	89	76.531	Drosophila_melanogaster
ENSODEG00000013590	-	98	97.030	ENSETEG00000012788	LSM7	99	97.030	Echinops_telfairi
ENSODEG00000013590	-	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSODEG00000013590	-	100	84.466	ENSEBUG00000016992	lsm7	99	84.466	Eptatretus_burgeri
ENSODEG00000013590	-	100	96.117	ENSECAG00000001440	LSM7	66	96.117	Equus_caballus
ENSODEG00000013590	-	100	99.029	ENSFCAG00000003445	LSM7	100	99.029	Felis_catus
ENSODEG00000013590	-	98	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSODEG00000013590	-	93	100.000	ENSFDAG00000007661	LSM7	100	100.000	Fukomys_damarensis
ENSODEG00000013590	-	98	96.040	ENSFHEG00000006349	lsm7	90	96.040	Fundulus_heteroclitus
ENSODEG00000013590	-	100	91.262	ENSGMOG00000013320	lsm7	100	91.262	Gadus_morhua
ENSODEG00000013590	-	100	96.117	ENSGAFG00000013902	lsm7	100	96.117	Gambusia_affinis
ENSODEG00000013590	-	100	92.233	ENSGACG00000010390	lsm7	100	92.233	Gasterosteus_aculeatus
ENSODEG00000013590	-	100	100.000	ENSGGOG00000010172	LSM7	100	100.000	Gorilla_gorilla
ENSODEG00000013590	-	100	94.175	ENSHBUG00000004616	lsm7	100	94.175	Haplochromis_burtoni
ENSODEG00000013590	-	100	100.000	ENSHGLG00000010587	LSM7	100	100.000	Heterocephalus_glaber_female
ENSODEG00000013590	-	100	100.000	ENSHGLG00100000852	LSM7	100	100.000	Heterocephalus_glaber_male
ENSODEG00000013590	-	98	94.059	ENSHCOG00000020252	lsm7	100	94.059	Hippocampus_comes
ENSODEG00000013590	-	100	95.146	ENSIPUG00000024724	lsm7	100	95.146	Ictalurus_punctatus
ENSODEG00000013590	-	98	100.000	ENSSTOG00000028372	LSM7	99	100.000	Ictidomys_tridecemlineatus
ENSODEG00000013590	-	98	98.020	ENSJJAG00000001936	Lsm7	98	98.020	Jaculus_jaculus
ENSODEG00000013590	-	100	96.117	ENSKMAG00000022151	lsm7	100	96.117	Kryptolebias_marmoratus
ENSODEG00000013590	-	100	94.175	ENSLBEG00000005203	lsm7	100	94.175	Labrus_bergylta
ENSODEG00000013590	-	100	97.087	ENSLACG00000015700	LSM7	100	97.087	Latimeria_chalumnae
ENSODEG00000013590	-	100	96.117	ENSLOCG00000004356	lsm7	100	96.117	Lepisosteus_oculatus
ENSODEG00000013590	-	98	100.000	ENSLAFG00000029302	LSM7	98	100.000	Loxodonta_africana
ENSODEG00000013590	-	100	100.000	ENSMFAG00000044572	LSM7	100	100.000	Macaca_fascicularis
ENSODEG00000013590	-	100	100.000	ENSMMUG00000000452	LSM7	100	100.000	Macaca_mulatta
ENSODEG00000013590	-	100	100.000	ENSMNEG00000004393	LSM7	100	100.000	Macaca_nemestrina
ENSODEG00000013590	-	100	100.000	ENSMLEG00000030852	LSM7	100	100.000	Mandrillus_leucophaeus
ENSODEG00000013590	-	100	94.175	ENSMAMG00000005410	lsm7	100	94.175	Mastacembelus_armatus
ENSODEG00000013590	-	100	94.175	ENSMZEG00005028055	lsm7	100	94.175	Maylandia_zebra
ENSODEG00000013590	-	100	98.058	ENSMGAG00000000750	LSM7	89	98.058	Meleagris_gallopavo
ENSODEG00000013590	-	100	99.029	ENSMAUG00000009276	Lsm7	100	99.029	Mesocricetus_auratus
ENSODEG00000013590	-	100	99.029	ENSMICG00000009988	-	100	99.029	Microcebus_murinus
ENSODEG00000013590	-	100	100.000	ENSMICG00000028619	-	100	100.000	Microcebus_murinus
ENSODEG00000013590	-	100	99.029	ENSMOCG00000016925	Lsm7	100	99.029	Microtus_ochrogaster
ENSODEG00000013590	-	100	95.146	ENSMMOG00000019645	lsm7	98	95.146	Mola_mola
ENSODEG00000013590	-	100	99.029	ENSMODG00000004722	LSM7	100	99.029	Monodelphis_domestica
ENSODEG00000013590	-	100	94.175	ENSMALG00000014511	lsm7	79	94.175	Monopterus_albus
ENSODEG00000013590	-	100	97.087	MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	Mus_caroli
ENSODEG00000013590	-	100	97.087	ENSMUSG00000035215	Lsm7	100	97.087	Mus_musculus
ENSODEG00000013590	-	100	97.087	MGP_PahariEiJ_G0031020	Lsm7	100	97.087	Mus_pahari
ENSODEG00000013590	-	100	97.087	MGP_SPRETEiJ_G0016425	Lsm7	100	97.087	Mus_spretus
ENSODEG00000013590	-	100	92.233	ENSMLUG00000024002	-	94	92.233	Myotis_lucifugus
ENSODEG00000013590	-	100	97.087	ENSMLUG00000013097	-	100	97.087	Myotis_lucifugus
ENSODEG00000013590	-	100	98.058	ENSNGAG00000021637	Lsm7	100	98.058	Nannospalax_galili
ENSODEG00000013590	-	98	94.059	ENSNBRG00000015770	lsm7	87	94.059	Neolamprologus_brichardi
ENSODEG00000013590	-	91	94.681	ENSNBRG00000001237	-	82	92.233	Neolamprologus_brichardi
ENSODEG00000013590	-	100	100.000	ENSNLEG00000002265	LSM7	100	100.000	Nomascus_leucogenys
ENSODEG00000013590	-	100	94.175	ENSONIG00000001801	lsm7	89	94.175	Oreochromis_niloticus
ENSODEG00000013590	-	100	95.146	ENSORLG00000023951	lsm7	100	95.146	Oryzias_latipes
ENSODEG00000013590	-	100	95.146	ENSORLG00020022226	lsm7	100	95.146	Oryzias_latipes_hni
ENSODEG00000013590	-	100	93.204	ENSORLG00015020044	lsm7	94	95.050	Oryzias_latipes_hsok
ENSODEG00000013590	-	100	95.146	ENSOMEG00000012806	lsm7	100	95.146	Oryzias_melastigma
ENSODEG00000013590	-	100	88.350	ENSOGAG00000024373	-	100	88.350	Otolemur_garnettii
ENSODEG00000013590	-	98	98.020	ENSOGAG00000000144	-	99	98.020	Otolemur_garnettii
ENSODEG00000013590	-	100	98.058	ENSOARG00000014013	LSM7	100	98.058	Ovis_aries
ENSODEG00000013590	-	100	100.000	ENSPPAG00000026500	LSM7	100	100.000	Pan_paniscus
ENSODEG00000013590	-	100	99.029	ENSPPRG00000008624	LSM7	100	99.029	Panthera_pardus
ENSODEG00000013590	-	98	99.010	ENSPTIG00000016252	LSM7	98	99.010	Panthera_tigris_altaica
ENSODEG00000013590	-	100	100.000	ENSPTRG00000010233	LSM7	100	100.000	Pan_troglodytes
ENSODEG00000013590	-	100	100.000	ENSPANG00000020668	LSM7	100	100.000	Papio_anubis
ENSODEG00000013590	-	100	97.087	ENSPKIG00000011325	lsm7	100	97.087	Paramormyrops_kingsleyae
ENSODEG00000013590	-	98	98.020	ENSPSIG00000017149	LSM7	89	98.020	Pelodiscus_sinensis
ENSODEG00000013590	-	100	95.146	ENSPMGG00000006498	lsm7	100	95.146	Periophthalmus_magnuspinnatus
ENSODEG00000013590	-	100	99.029	ENSPCIG00000030454	LSM7	100	99.029	Phascolarctos_cinereus
ENSODEG00000013590	-	100	93.204	ENSPFOG00000012467	lsm7	91	93.204	Poecilia_formosa
ENSODEG00000013590	-	100	93.204	ENSPLAG00000000252	lsm7	94	94.118	Poecilia_latipinna
ENSODEG00000013590	-	100	93.204	ENSPMEG00000000587	lsm7	94	94.118	Poecilia_mexicana
ENSODEG00000013590	-	78	76.543	ENSPREG00000016718	lsm7	65	76.543	Poecilia_reticulata
ENSODEG00000013590	-	71	97.260	ENSPPYG00000009348	-	50	97.260	Pongo_abelii
ENSODEG00000013590	-	100	100.000	ENSPCOG00000017177	LSM7	100	100.000	Propithecus_coquereli
ENSODEG00000013590	-	100	94.175	ENSPNYG00000006938	lsm7	100	94.175	Pundamilia_nyererei
ENSODEG00000013590	-	100	95.146	ENSPNAG00000010141	lsm7	100	95.146	Pygocentrus_nattereri
ENSODEG00000013590	-	100	98.058	ENSRNOG00000019552	Lsm7	100	98.058	Rattus_norvegicus
ENSODEG00000013590	-	100	100.000	ENSRBIG00000035978	LSM7	100	100.000	Rhinopithecus_bieti
ENSODEG00000013590	-	100	100.000	ENSRROG00000034044	LSM7	100	100.000	Rhinopithecus_roxellana
ENSODEG00000013590	-	86	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSODEG00000013590	-	100	100.000	ENSSBOG00000034899	LSM7	100	100.000	Saimiri_boliviensis_boliviensis
ENSODEG00000013590	-	100	95.146	ENSSFOG00015006728	lsm7	100	95.146	Scleropages_formosus
ENSODEG00000013590	-	100	93.204	ENSSMAG00000004195	lsm7	93	95.050	Scophthalmus_maximus
ENSODEG00000013590	-	100	95.146	ENSSDUG00000001863	lsm7	100	95.146	Seriola_dumerili
ENSODEG00000013590	-	100	95.146	ENSSLDG00000016339	lsm7	100	95.146	Seriola_lalandi_dorsalis
ENSODEG00000013590	-	100	95.146	ENSSPAG00000015221	lsm7	100	95.146	Stegastes_partitus
ENSODEG00000013590	-	98	100.000	ENSSSCG00000013463	LSM7	99	100.000	Sus_scrofa
ENSODEG00000013590	-	98	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSODEG00000013590	-	100	95.146	ENSTRUG00000022913	lsm7	100	95.146	Takifugu_rubripes
ENSODEG00000013590	-	100	95.146	ENSTNIG00000015525	lsm7	100	95.146	Tetraodon_nigroviridis
ENSODEG00000013590	-	68	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSODEG00000013590	-	100	97.087	ENSUAMG00000000912	LSM7	86	97.087	Ursus_americanus
ENSODEG00000013590	-	98	99.010	ENSUMAG00000006556	LSM7	79	99.010	Ursus_maritimus
ENSODEG00000013590	-	69	98.592	ENSVVUG00000002640	LSM7	65	98.592	Vulpes_vulpes
ENSODEG00000013590	-	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSODEG00000013590	-	99	95.098	ENSXCOG00000002572	lsm7	100	95.098	Xiphophorus_couchianus
ENSODEG00000013590	-	100	96.117	ENSXMAG00000018630	lsm7	100	96.117	Xiphophorus_maculatus