EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000013705 (Gene tree)
Gene ID: 101559965
Gene Symbol: RBM42
Alias: -
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 9476 bases
Position: chrJH651598.1:5985011-5994486
Accession: 101559965
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000018600	RRM_1	PF00076.22	5.8e-18	1	1
ENSODEP00000018599	RRM_1	PF00076.22	6.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000018832	RBM42-201	1697	XM_004636695	ENSODEP00000018599	482 (aa)	XP_004636752	-
ENSODET00000018833	RBM42-202	1587	XM_004636696	ENSODEP00000018600	453 (aa)	XP_004636753	-

Gene Model

Click here to download ENSODEG00000013705's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000013705's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000013705	RBM42	99	97.783	ENSG00000126254	RBM42	100	100.000	Homo_sapiens
ENSODEG00000013705	RBM42	99	96.868	ENSAMEG00000000524	RBM42	100	96.868	Ailuropoda_melanoleuca
ENSODEG00000013705	RBM42	99	97.065	ENSANAG00000027537	RBM42	100	100.000	Aotus_nancymaae
ENSODEG00000013705	RBM42	99	97.275	ENSBTAG00000013440	RBM42	100	97.275	Bos_taurus
ENSODEG00000013705	RBM42	99	97.991	ENSCJAG00000010220	RBM42	100	100.000	Callithrix_jacchus
ENSODEG00000013705	RBM42	99	90.985	ENSCAFG00020018628	RBM42	96	100.000	Canis_lupus_dingo
ENSODEG00000013705	RBM42	99	97.545	ENSCHIG00000009518	RBM42	100	97.545	Capra_hircus
ENSODEG00000013705	RBM42	99	97.071	ENSTSYG00000014688	RBM42	100	100.000	Carlito_syrichta
ENSODEG00000013705	RBM42	80	98.964	ENSCAPG00000009566	RBM42	99	98.964	Cavia_aperea
ENSODEG00000013705	RBM42	99	98.956	ENSCPOG00000012365	RBM42	100	98.451	Cavia_porcellus
ENSODEG00000013705	RBM42	99	97.694	ENSCCAG00000034440	RBM42	100	100.000	Cebus_capucinus
ENSODEG00000013705	RBM42	99	97.339	ENSCATG00000041924	RBM42	100	100.000	Cercocebus_atys
ENSODEG00000013705	RBM42	99	99.167	ENSCLAG00000012865	RBM42	99	99.167	Chinchilla_lanigera
ENSODEG00000013705	RBM42	99	97.339	ENSCSAG00000004422	RBM42	100	97.339	Chlorocebus_sabaeus
ENSODEG00000013705	RBM42	99	87.421	ENSCANG00000030272	RBM42	100	87.421	Colobus_angolensis_palliatus
ENSODEG00000013705	RBM42	99	96.239	ENSCGRG00001018540	Rbm42	100	96.239	Cricetulus_griseus_chok1gshd
ENSODEG00000013705	RBM42	99	96.452	ENSDNOG00000037397	RBM42	100	96.452	Dasypus_novemcinctus
ENSODEG00000013705	RBM42	99	96.018	ENSDORG00000013001	Rbm42	100	96.018	Dipodomys_ordii
ENSODEG00000013705	RBM42	75	94.203	ENSETEG00000007878	RBM42	74	94.203	Echinops_telfairi
ENSODEG00000013705	RBM42	99	97.768	ENSEASG00005001074	RBM42	100	97.768	Equus_asinus_asinus
ENSODEG00000013705	RBM42	99	97.768	ENSECAG00000018215	RBM42	100	97.768	Equus_caballus
ENSODEG00000013705	RBM42	99	97.484	ENSFCAG00000006376	RBM42	100	100.000	Felis_catus
ENSODEG00000013705	RBM42	99	97.357	ENSFDAG00000007440	RBM42	100	97.357	Fukomys_damarensis
ENSODEG00000013705	RBM42	99	97.561	ENSGGOG00000009972	RBM42	100	100.000	Gorilla_gorilla
ENSODEG00000013705	RBM42	99	96.667	ENSHGLG00000008418	RBM42	100	96.460	Heterocephalus_glaber_female
ENSODEG00000013705	RBM42	99	96.667	ENSHGLG00100018667	RBM42	100	96.460	Heterocephalus_glaber_male
ENSODEG00000013705	RBM42	99	98.670	ENSSTOG00000013050	RBM42	99	98.670	Ictidomys_tridecemlineatus
ENSODEG00000013705	RBM42	99	96.205	ENSJJAG00000010421	Rbm42	99	96.205	Jaculus_jaculus
ENSODEG00000013705	RBM42	97	92.308	ENSLAFG00000014993	RBM42	100	91.042	Loxodonta_africana
ENSODEG00000013705	RBM42	99	97.339	ENSMFAG00000002758	RBM42	100	100.000	Macaca_fascicularis
ENSODEG00000013705	RBM42	99	97.098	ENSMMUG00000018954	RBM42	100	100.000	Macaca_mulatta
ENSODEG00000013705	RBM42	99	97.339	ENSMNEG00000030009	RBM42	100	100.000	Macaca_nemestrina
ENSODEG00000013705	RBM42	99	97.561	ENSMLEG00000036119	RBM42	100	100.000	Mandrillus_leucophaeus
ENSODEG00000013705	RBM42	99	98.113	ENSMICG00000009880	RBM42	100	100.000	Microcebus_murinus
ENSODEG00000013705	RBM42	99	95.833	ENSMOCG00000000405	Rbm42	100	95.796	Microtus_ochrogaster
ENSODEG00000013705	RBM42	99	96.674	MGP_CAROLIEiJ_G0029536	Rbm42	99	96.674	Mus_caroli
ENSODEG00000013705	RBM42	99	96.674	ENSMUSG00000036733	Rbm42	99	96.674	Mus_musculus
ENSODEG00000013705	RBM42	99	96.674	MGP_PahariEiJ_G0012770	Rbm42	99	96.674	Mus_pahari
ENSODEG00000013705	RBM42	99	96.674	MGP_SPRETEiJ_G0030632	Rbm42	99	96.674	Mus_spretus
ENSODEG00000013705	RBM42	99	97.991	ENSMPUG00000006288	RBM42	100	97.991	Mustela_putorius_furo
ENSODEG00000013705	RBM42	99	96.436	ENSMLUG00000011334	RBM42	100	96.436	Myotis_lucifugus
ENSODEG00000013705	RBM42	99	96.018	ENSNGAG00000019698	Rbm42	100	96.018	Nannospalax_galili
ENSODEG00000013705	RBM42	69	97.305	ENSNLEG00000011272	-	94	90.503	Nomascus_leucogenys
ENSODEG00000013705	RBM42	95	81.602	ENSMEUG00000016300	RBM42	100	80.658	Notamacropus_eugenii
ENSODEG00000013705	RBM42	99	93.920	ENSOPRG00000001229	RBM42	100	92.034	Ochotona_princeps
ENSODEG00000013705	RBM42	99	97.339	ENSOCUG00000003337	RBM42	100	97.339	Oryctolagus_cuniculus
ENSODEG00000013705	RBM42	99	96.646	ENSOGAG00000004144	RBM42	100	96.646	Otolemur_garnettii
ENSODEG00000013705	RBM42	97	88.651	ENSOARG00000004926	RBM42	99	91.649	Ovis_aries
ENSODEG00000013705	RBM42	99	97.991	ENSPPAG00000037315	RBM42	100	100.000	Pan_paniscus
ENSODEG00000013705	RBM42	99	97.484	ENSPPRG00000016784	RBM42	100	100.000	Panthera_pardus
ENSODEG00000013705	RBM42	99	97.065	ENSPTIG00000019270	RBM42	100	100.000	Panthera_tigris_altaica
ENSODEG00000013705	RBM42	99	97.561	ENSPTRG00000010852	RBM42	100	100.000	Pan_troglodytes
ENSODEG00000013705	RBM42	99	96.855	ENSPANG00000017032	RBM42	100	100.000	Papio_anubis
ENSODEG00000013705	RBM42	99	97.124	ENSPEMG00000012065	Rbm42	100	97.124	Peromyscus_maniculatus_bairdii
ENSODEG00000013705	RBM42	99	96.289	ENSPPYG00000009871	RBM42	100	96.289	Pongo_abelii
ENSODEG00000013705	RBM42	99	83.648	ENSPCAG00000013053	RBM42	100	81.971	Procavia_capensis
ENSODEG00000013705	RBM42	69	97.598	ENSPCOG00000020672	RBM42	81	97.598	Propithecus_coquereli
ENSODEG00000013705	RBM42	99	98.113	ENSPCOG00000026433	-	100	100.000	Propithecus_coquereli
ENSODEG00000013705	RBM42	99	97.065	ENSPVAG00000012815	RBM42	100	97.065	Pteropus_vampyrus
ENSODEG00000013705	RBM42	99	96.896	ENSRNOG00000024278	Rbm42	99	96.896	Rattus_norvegicus
ENSODEG00000013705	RBM42	99	97.339	ENSRBIG00000007566	RBM42	100	100.000	Rhinopithecus_bieti
ENSODEG00000013705	RBM42	99	97.991	ENSRROG00000042313	RBM42	100	100.000	Rhinopithecus_roxellana
ENSODEG00000013705	RBM42	84	97.783	ENSSBOG00000030666	RBM42	100	97.783	Saimiri_boliviensis_boliviensis
ENSODEG00000013705	RBM42	99	87.292	ENSSARG00000010724	RBM42	100	87.292	Sorex_araneus
ENSODEG00000013705	RBM42	99	97.321	ENSSSCG00000002905	RBM42	100	97.321	Sus_scrofa
ENSODEG00000013705	RBM42	99	97.768	ENSUAMG00000020711	RBM42	100	97.768	Ursus_americanus
ENSODEG00000013705	RBM42	99	97.484	ENSUMAG00000020223	RBM42	100	97.484	Ursus_maritimus
ENSODEG00000013705	RBM42	99	97.768	ENSVVUG00000015117	RBM42	100	97.768	Vulpes_vulpes