EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000013870 (Gene tree)
Gene ID: 101577016
Gene Symbol: RBM12
Alias: HRIHFB2091|KIAA0765|SWAN
Full Name: copine 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 47270 bases
Position: chrJH651552.1:6255650-6302919
Accession: 101577016
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000018818	RRM_1	PF00076.22	9.4e-30	1	3
ENSODEP00000018818	RRM_1	PF00076.22	9.4e-30	2	3
ENSODEP00000018818	RRM_1	PF00076.22	9.4e-30	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000019055	RBM12-204	2940	XM_012514660	ENSODEP00000018818	979 (aa)	-	-
ENSODET00000019054	RBM12-203	978	-	ENSODEP00000018817	326 (aa)	-	-
ENSODET00000019053	RBM12-202	1616	XM_004630864	ENSODEP00000018816	537 (aa)	XP_004630921	UPI0003338E31
ENSODET00000019052	RBM12-201	1990	-	ENSODEP00000018815	54 (aa)	-	-

Gene Model

Click here to download ENSODEG00000013870's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000013870's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000013870	RBM12	52	71.264	ENSODEG00000019204	RBM12B	53	71.264

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000013870	RBM12	100	86.442	ENSG00000244462	RBM12	100	96.269	Homo_sapiens
ENSODEG00000013870	RBM12	97	96.269	ENSAMEG00000019189	RBM12	100	88.991	Ailuropoda_melanoleuca
ENSODEG00000013870	RBM12	91	82.927	ENSACAG00000006330	RBM12	98	93.103	Anolis_carolinensis
ENSODEG00000013870	RBM12	82	89.875	ENSANAG00000032596	RBM12	84	89.747	Aotus_nancymaae
ENSODEG00000013870	RBM12	84	92.336	ENSBTAG00000044015	RBM12	100	89.806	Bos_taurus
ENSODEG00000013870	RBM12	93	97.090	ENSCAFG00000008256	RBM12	98	89.093	Canis_familiaris
ENSODEG00000013870	RBM12	100	86.049	ENSCAFG00020005650	RBM12	100	88.685	Canis_lupus_dingo
ENSODEG00000013870	RBM12	100	87.054	ENSCHIG00000024592	RBM12	86	89.747	Capra_hircus
ENSODEG00000013870	RBM12	100	87.743	ENSTSYG00000030563	RBM12	98	88.049	Carlito_syrichta
ENSODEG00000013870	RBM12	83	91.972	ENSCAPG00000006176	RBM12	96	91.243	Cavia_aperea
ENSODEG00000013870	RBM12	100	90.088	ENSCPOG00000035170	RBM12	100	89.107	Cavia_porcellus
ENSODEG00000013870	RBM12	96	86.368	ENSCCAG00000036056	-	98	86.581	Cebus_capucinus
ENSODEG00000013870	RBM12	88	80.861	ENSCCAG00000035899	-	100	81.863	Cebus_capucinus
ENSODEG00000013870	RBM12	100	86.544	ENSCATG00000030934	RBM12	84	89.277	Cercocebus_atys
ENSODEG00000013870	RBM12	100	89.318	ENSCLAG00000017230	RBM12	100	94.058	Chinchilla_lanigera
ENSODEG00000013870	RBM12	100	85.933	ENSCANG00000030552	RBM12	84	88.916	Colobus_angolensis_palliatus
ENSODEG00000013870	RBM12	100	86.871	ENSCGRG00001021144	Rbm12	100	86.772	Cricetulus_griseus_chok1gshd
ENSODEG00000013870	RBM12	100	86.871	ENSCGRG00000012719	Rbm12	100	86.772	Cricetulus_griseus_crigri
ENSODEG00000013870	RBM12	100	82.359	ENSDORG00000000606	-	100	82.061	Dipodomys_ordii
ENSODEG00000013870	RBM12	100	87.678	ENSDORG00000028509	-	100	88.328	Dipodomys_ordii
ENSODEG00000013870	RBM12	51	66.412	ENSEBUG00000016806	rbm12	89	60.390	Eptatretus_burgeri
ENSODEG00000013870	RBM12	100	87.666	ENSECAG00000021997	RBM12	86	90.591	Equus_caballus
ENSODEG00000013870	RBM12	52	99.123	ENSEEUG00000008858	-	56	96.774	Erinaceus_europaeus
ENSODEG00000013870	RBM12	100	89.602	ENSFDAG00000014663	RBM12	100	88.687	Fukomys_damarensis
ENSODEG00000013870	RBM12	93	84.969	ENSGALG00000030253	RBM12	99	94.253	Gallus_gallus
ENSODEG00000013870	RBM12	100	86.442	ENSGGOG00000028500	RBM12	84	89.157	Gorilla_gorilla
ENSODEG00000013870	RBM12	82	93.820	ENSHGLG00000013208	RBM12	100	91.919	Heterocephalus_glaber_female
ENSODEG00000013870	RBM12	87	97.806	ENSHGLG00100019158	RBM12	90	97.806	Heterocephalus_glaber_male
ENSODEG00000013870	RBM12	100	89.479	ENSSTOG00000019739	RBM12	100	89.070	Ictidomys_tridecemlineatus
ENSODEG00000013870	RBM12	100	71.053	ENSJJAG00000009879	-	94	85.204	Jaculus_jaculus
ENSODEG00000013870	RBM12	100	80.943	ENSLAFG00000010341	RBM12	86	90.350	Loxodonta_africana
ENSODEG00000013870	RBM12	100	86.544	ENSMFAG00000032583	RBM12	84	89.518	Macaca_fascicularis
ENSODEG00000013870	RBM12	100	86.646	ENSMMUG00000020960	CPNE1	86	89.398	Macaca_mulatta
ENSODEG00000013870	RBM12	100	86.646	ENSMNEG00000045365	RBM12	84	89.398	Macaca_nemestrina
ENSODEG00000013870	RBM12	100	86.646	ENSMLEG00000032492	RBM12	84	89.398	Mandrillus_leucophaeus
ENSODEG00000013870	RBM12	91	85.276	ENSMGAG00000001502	RBM12	97	93.333	Meleagris_gallopavo
ENSODEG00000013870	RBM12	100	87.364	ENSMAUG00000012800	Rbm12	100	87.438	Mesocricetus_auratus
ENSODEG00000013870	RBM12	100	84.985	ENSMICG00000032761	-	98	88.253	Microcebus_murinus
ENSODEG00000013870	RBM12	76	79.463	ENSMICG00000029540	-	74	78.571	Microcebus_murinus
ENSODEG00000013870	RBM12	100	85.658	ENSMOCG00000012950	Rbm12	100	85.630	Microtus_ochrogaster
ENSODEG00000013870	RBM12	94	90.549	ENSMODG00000001591	RBM12	97	94.253	Monodelphis_domestica
ENSODEG00000013870	RBM12	100	84.922	MGP_CAROLIEiJ_G0024551	Rbm12	100	84.825	Mus_caroli
ENSODEG00000013870	RBM12	100	85.390	ENSMUSG00000089824	Rbm12	100	86.278	Mus_musculus
ENSODEG00000013870	RBM12	100	85.214	MGP_PahariEiJ_G0025996	Rbm12	100	85.117	Mus_pahari
ENSODEG00000013870	RBM12	100	84.848	MGP_SPRETEiJ_G0025473	Rbm12	100	85.630	Mus_spretus
ENSODEG00000013870	RBM12	100	88.481	ENSMPUG00000017789	-	100	88.991	Mustela_putorius_furo
ENSODEG00000013870	RBM12	100	87.054	ENSMLUG00000011217	RBM12	84	89.988	Myotis_lucifugus
ENSODEG00000013870	RBM12	100	87.957	ENSNGAG00000015846	Rbm12	100	87.858	Nannospalax_galili
ENSODEG00000013870	RBM12	100	86.735	ENSNLEG00000010268	RBM12	84	89.157	Nomascus_leucogenys
ENSODEG00000013870	RBM12	94	88.415	ENSMEUG00000007621	RBM12	72	94.253	Notamacropus_eugenii
ENSODEG00000013870	RBM12	100	87.360	ENSOPRG00000005687	RBM12	100	87.564	Ochotona_princeps
ENSODEG00000013870	RBM12	100	86.442	ENSPPAG00000040719	RBM12	84	89.157	Pan_paniscus
ENSODEG00000013870	RBM12	100	86.442	ENSPTRG00000040708	-	84	89.157	Pan_troglodytes
ENSODEG00000013870	RBM12	100	86.442	ENSPTRG00000013446	RBM12	84	89.157	Pan_troglodytes
ENSODEG00000013870	RBM12	100	86.646	ENSPANG00000020003	CPNE1	84	89.398	Papio_anubis
ENSODEG00000013870	RBM12	94	86.000	ENSPSIG00000007369	RBM12	90	94.253	Pelodiscus_sinensis
ENSODEG00000013870	RBM12	100	86.608	ENSPEMG00000017769	Rbm12	100	86.413	Peromyscus_maniculatus_bairdii
ENSODEG00000013870	RBM12	57	79.365	ENSPFOG00000023551	rbm12	98	78.873	Poecilia_formosa
ENSODEG00000013870	RBM12	100	88.337	ENSPPYG00000010960	RBM12	86	89.277	Pongo_abelii
ENSODEG00000013870	RBM12	100	86.619	ENSPCAG00000008653	RBM12	100	87.130	Procavia_capensis
ENSODEG00000013870	RBM12	100	87.947	ENSPCOG00000023724	RBM12	84	90.712	Propithecus_coquereli
ENSODEG00000013870	RBM12	100	77.020	ENSPVAG00000014937	RBM12	100	87.870	Pteropus_vampyrus
ENSODEG00000013870	RBM12	72	92.766	ENSRNOG00000049913	LOC100910990	100	91.228	Rattus_norvegicus
ENSODEG00000013870	RBM12	72	92.766	ENSRNOG00000019723	Rbm12	100	91.228	Rattus_norvegicus
ENSODEG00000013870	RBM12	100	86.137	ENSRBIG00000042965	RBM12	84	89.157	Rhinopithecus_bieti
ENSODEG00000013870	RBM12	100	86.137	ENSRROG00000037485	RBM12	84	89.157	Rhinopithecus_roxellana
ENSODEG00000013870	RBM12	82	89.625	ENSSBOG00000027633	RBM12	84	89.505	Saimiri_boliviensis_boliviensis
ENSODEG00000013870	RBM12	94	90.549	ENSSHAG00000018585	RBM12	99	94.253	Sarcophilus_harrisii
ENSODEG00000013870	RBM12	100	90.112	ENSSSCG00000036156	RBM12	100	90.010	Sus_scrofa
ENSODEG00000013870	RBM12	91	85.452	ENSTGUG00000003002	RBM12	100	93.103	Taeniopygia_guttata
ENSODEG00000013870	RBM12	100	88.889	ENSTTRG00000017035	RBM12	100	88.787	Tursiops_truncatus
ENSODEG00000013870	RBM12	100	84.168	ENSUAMG00000010430	RBM12	100	88.991	Ursus_americanus
ENSODEG00000013870	RBM12	87	100.000	ENSVPAG00000003812	RBM12	89	100.000	Vicugna_pacos
ENSODEG00000013870	RBM12	90	65.507	ENSXETG00000033541	RBM12	56	82.759	Xenopus_tropicalis