EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000013995 (Gene tree)
Gene ID: 101573898
Gene Symbol: CPSF1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 15809 bases
Position: chrJH651619.1:3112729-3128537
Accession: 101573898
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000018979	CPSF_A	PF03178.15	2.4e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000019219	CPSF1-201	4437	XM_004638872	ENSODEP00000018979	1441 (aa)	XP_004638929	UPI000333DC64

Gene Model

Click here to download ENSODEG00000013995's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000013995's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000013995	CPSF1	100	96.674	ENSG00000071894	CPSF1	100	96.674	Homo_sapiens
ENSODEG00000013995	CPSF1	100	78.161	ENSAPOG00000019621	cpsf1	100	78.296	Acanthochromis_polyacanthus
ENSODEG00000013995	CPSF1	97	95.211	ENSAMEG00000005557	CPSF1	100	95.211	Ailuropoda_melanoleuca
ENSODEG00000013995	CPSF1	100	78.740	ENSACIG00000006112	cpsf1	100	79.086	Amphilophus_citrinellus
ENSODEG00000013995	CPSF1	100	79.545	ENSAOCG00000007120	cpsf1	100	79.683	Amphiprion_ocellaris
ENSODEG00000013995	CPSF1	100	80.014	ENSAPEG00000005755	cpsf1	100	80.152	Amphiprion_percula
ENSODEG00000013995	CPSF1	100	78.138	ENSATEG00000011097	cpsf1	100	78.408	Anabas_testudineus
ENSODEG00000013995	CPSF1	93	81.683	ENSACAG00000009655	CPSF1	100	81.683	Anolis_carolinensis
ENSODEG00000013995	CPSF1	100	96.741	ENSANAG00000036514	CPSF1	100	96.741	Aotus_nancymaae
ENSODEG00000013995	CPSF1	100	77.562	ENSACLG00000012231	cpsf1	99	79.437	Astatotilapia_calliptera
ENSODEG00000013995	CPSF1	100	73.997	ENSAMXG00000008485	cpsf1	100	73.167	Astyanax_mexicanus
ENSODEG00000013995	CPSF1	100	94.826	ENSBTAG00000008355	CPSF1	100	95.173	Bos_taurus
ENSODEG00000013995	CPSF1	100	32.232	WBGene00022301	cpsf-1	100	40.449	Caenorhabditis_elegans
ENSODEG00000013995	CPSF1	100	96.671	ENSCJAG00000021421	CPSF1	100	96.671	Callithrix_jacchus
ENSODEG00000013995	CPSF1	97	96.710	ENSCAFG00000001600	CPSF1	100	97.019	Canis_familiaris
ENSODEG00000013995	CPSF1	100	96.884	ENSCAFG00020020821	CPSF1	100	96.884	Canis_lupus_dingo
ENSODEG00000013995	CPSF1	100	91.187	ENSCHIG00000015833	CPSF1	100	91.187	Capra_hircus
ENSODEG00000013995	CPSF1	100	97.781	ENSTSYG00000028560	CPSF1	100	97.781	Carlito_syrichta
ENSODEG00000013995	CPSF1	97	98.063	ENSCAPG00000014921	CPSF1	99	98.063	Cavia_aperea
ENSODEG00000013995	CPSF1	100	97.642	ENSCPOG00000011448	CPSF1	100	97.642	Cavia_porcellus
ENSODEG00000013995	CPSF1	100	97.018	ENSCCAG00000037658	CPSF1	100	97.018	Cebus_capucinus
ENSODEG00000013995	CPSF1	100	96.671	ENSCATG00000037234	CPSF1	99	97.910	Cercocebus_atys
ENSODEG00000013995	CPSF1	100	99.722	ENSCLAG00000012166	CPSF1	100	99.722	Chinchilla_lanigera
ENSODEG00000013995	CPSF1	100	96.741	ENSCSAG00000008502	CPSF1	100	96.741	Chlorocebus_sabaeus
ENSODEG00000013995	CPSF1	99	87.885	ENSCPBG00000018910	CPSF1	96	87.885	Chrysemys_picta_bellii
ENSODEG00000013995	CPSF1	96	48.744	ENSCING00000000514	-	100	48.672	Ciona_intestinalis
ENSODEG00000013995	CPSF1	99	48.454	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSODEG00000013995	CPSF1	99	91.043	ENSCANG00000032760	CPSF1	99	91.043	Colobus_angolensis_palliatus
ENSODEG00000013995	CPSF1	100	97.502	ENSCGRG00001016344	Cpsf1	100	97.502	Cricetulus_griseus_chok1gshd
ENSODEG00000013995	CPSF1	100	95.350	ENSCGRG00000003118	Cpsf1	100	95.350	Cricetulus_griseus_crigri
ENSODEG00000013995	CPSF1	100	77.839	ENSCSEG00000013464	cpsf1	100	77.839	Cynoglossus_semilaevis
ENSODEG00000013995	CPSF1	85	77.045	ENSCVAG00000014059	cpsf1	100	75.463	Cyprinodon_variegatus
ENSODEG00000013995	CPSF1	100	79.904	ENSDARG00000034178	cpsf1	100	79.972	Danio_rerio
ENSODEG00000013995	CPSF1	68	96.522	ENSDNOG00000043654	CPSF1	94	96.522	Dasypus_novemcinctus
ENSODEG00000013995	CPSF1	97	96.915	ENSDORG00000006278	Cpsf1	99	96.915	Dipodomys_ordii
ENSODEG00000013995	CPSF1	100	45.094	FBgn0024698	Cpsf160	100	45.101	Drosophila_melanogaster
ENSODEG00000013995	CPSF1	80	97.987	ENSETEG00000006022	CPSF1	83	97.987	Echinops_telfairi
ENSODEG00000013995	CPSF1	100	97.368	ENSEASG00005010774	CPSF1	100	97.368	Equus_asinus_asinus
ENSODEG00000013995	CPSF1	100	97.438	ENSECAG00000022209	CPSF1	100	97.438	Equus_caballus
ENSODEG00000013995	CPSF1	100	95.017	ENSEEUG00000000471	CPSF1	100	95.017	Erinaceus_europaeus
ENSODEG00000013995	CPSF1	100	78.341	ENSELUG00000012271	cpsf1	100	78.801	Esox_lucius
ENSODEG00000013995	CPSF1	100	99.375	ENSFDAG00000016060	CPSF1	100	99.375	Fukomys_damarensis
ENSODEG00000013995	CPSF1	100	77.082	ENSFHEG00000016801	cpsf1	100	77.151	Fundulus_heteroclitus
ENSODEG00000013995	CPSF1	100	78.222	ENSGMOG00000000796	cpsf1	100	78.429	Gadus_morhua
ENSODEG00000013995	CPSF1	95	83.929	ENSGAFG00000018890	cpsf1	100	83.929	Gambusia_affinis
ENSODEG00000013995	CPSF1	100	78.951	ENSGACG00000008703	cpsf1	100	78.940	Gasterosteus_aculeatus
ENSODEG00000013995	CPSF1	100	84.152	ENSGAGG00000004276	CPSF1	98	87.825	Gopherus_agassizii
ENSODEG00000013995	CPSF1	100	96.669	ENSGGOG00000016185	CPSF1	100	96.669	Gorilla_gorilla
ENSODEG00000013995	CPSF1	100	79.778	ENSHBUG00000018900	cpsf1	100	80.194	Haplochromis_burtoni
ENSODEG00000013995	CPSF1	100	99.445	ENSHGLG00000016139	CPSF1	100	99.445	Heterocephalus_glaber_female
ENSODEG00000013995	CPSF1	100	99.375	ENSHGLG00100009750	CPSF1	100	99.375	Heterocephalus_glaber_male
ENSODEG00000013995	CPSF1	100	77.273	ENSHCOG00000018509	cpsf1	100	77.393	Hippocampus_comes
ENSODEG00000013995	CPSF1	100	76.442	ENSIPUG00000011259	cpsf1	100	76.442	Ictalurus_punctatus
ENSODEG00000013995	CPSF1	97	97.284	ENSSTOG00000009957	CPSF1	99	97.284	Ictidomys_tridecemlineatus
ENSODEG00000013995	CPSF1	100	97.294	ENSJJAG00000023002	Cpsf1	100	97.294	Jaculus_jaculus
ENSODEG00000013995	CPSF1	91	85.580	ENSKMAG00000001940	cpsf1	99	85.580	Kryptolebias_marmoratus
ENSODEG00000013995	CPSF1	100	77.387	ENSLBEG00000003601	cpsf1	100	77.602	Labrus_bergylta
ENSODEG00000013995	CPSF1	88	81.851	ENSLACG00000000233	CPSF1	100	68.656	Latimeria_chalumnae
ENSODEG00000013995	CPSF1	100	78.177	ENSLOCG00000008484	cpsf1	100	78.522	Lepisosteus_oculatus
ENSODEG00000013995	CPSF1	97	95.562	ENSLAFG00000022601	CPSF1	100	95.562	Loxodonta_africana
ENSODEG00000013995	CPSF1	100	96.671	ENSMFAG00000037013	CPSF1	100	96.671	Macaca_fascicularis
ENSODEG00000013995	CPSF1	100	96.741	ENSMMUG00000007380	CPSF1	100	96.741	Macaca_mulatta
ENSODEG00000013995	CPSF1	97	96.700	ENSMNEG00000043564	CPSF1	100	96.700	Macaca_nemestrina
ENSODEG00000013995	CPSF1	100	96.671	ENSMLEG00000043010	CPSF1	100	96.671	Mandrillus_leucophaeus
ENSODEG00000013995	CPSF1	100	78.769	ENSMAMG00000003803	cpsf1	100	78.769	Mastacembelus_armatus
ENSODEG00000013995	CPSF1	100	77.701	ENSMZEG00005001168	cpsf1	100	78.116	Maylandia_zebra
ENSODEG00000013995	CPSF1	100	97.502	ENSMAUG00000003601	Cpsf1	100	97.502	Mesocricetus_auratus
ENSODEG00000013995	CPSF1	100	97.363	ENSMICG00000015767	CPSF1	100	97.363	Microcebus_murinus
ENSODEG00000013995	CPSF1	100	97.502	ENSMOCG00000022758	Cpsf1	100	97.502	Microtus_ochrogaster
ENSODEG00000013995	CPSF1	100	79.239	ENSMMOG00000021245	cpsf1	100	79.377	Mola_mola
ENSODEG00000013995	CPSF1	100	93.375	ENSMODG00000010755	CPSF1	100	93.375	Monodelphis_domestica
ENSODEG00000013995	CPSF1	100	78.131	ENSMALG00000020545	cpsf1	100	78.199	Monopterus_albus
ENSODEG00000013995	CPSF1	100	98.057	MGP_CAROLIEiJ_G0019936	Cpsf1	100	98.057	Mus_caroli
ENSODEG00000013995	CPSF1	100	97.918	ENSMUSG00000034022	Cpsf1	100	97.918	Mus_musculus
ENSODEG00000013995	CPSF1	100	97.988	MGP_PahariEiJ_G0019946	Cpsf1	100	97.988	Mus_pahari
ENSODEG00000013995	CPSF1	100	97.988	MGP_SPRETEiJ_G0020839	Cpsf1	100	97.988	Mus_spretus
ENSODEG00000013995	CPSF1	94	96.219	ENSMPUG00000006419	CPSF1	93	96.219	Mustela_putorius_furo
ENSODEG00000013995	CPSF1	100	97.085	ENSNGAG00000022460	Cpsf1	100	97.085	Nannospalax_galili
ENSODEG00000013995	CPSF1	100	75.173	ENSNBRG00000000813	cpsf1	100	75.173	Neolamprologus_brichardi
ENSODEG00000013995	CPSF1	86	85.320	ENSNLEG00000010633	-	100	88.889	Nomascus_leucogenys
ENSODEG00000013995	CPSF1	82	98.256	ENSMEUG00000014922	CPSF1	85	98.256	Notamacropus_eugenii
ENSODEG00000013995	CPSF1	61	96.429	ENSOPRG00000004693	-	71	96.429	Ochotona_princeps
ENSODEG00000013995	CPSF1	100	80.194	ENSONIG00000007676	cpsf1	100	80.540	Oreochromis_niloticus
ENSODEG00000013995	CPSF1	58	92.143	ENSOANG00000010716	CPSF1	88	92.143	Ornithorhynchus_anatinus
ENSODEG00000013995	CPSF1	100	77.483	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSODEG00000013995	CPSF1	100	77.619	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSODEG00000013995	CPSF1	100	77.551	ENSORLG00015009979	cpsf1	100	77.619	Oryzias_latipes_hsok
ENSODEG00000013995	CPSF1	100	77.520	ENSOMEG00000011849	cpsf1	100	77.793	Oryzias_melastigma
ENSODEG00000013995	CPSF1	100	97.434	ENSOGAG00000000315	CPSF1	100	97.434	Otolemur_garnettii
ENSODEG00000013995	CPSF1	100	96.741	ENSPPAG00000019280	CPSF1	100	96.741	Pan_paniscus
ENSODEG00000013995	CPSF1	100	95.092	ENSPTRG00000051253	-	100	95.092	Pan_troglodytes
ENSODEG00000013995	CPSF1	100	96.741	ENSPTRG00000049288	-	100	96.741	Pan_troglodytes
ENSODEG00000013995	CPSF1	97	96.557	ENSPANG00000015005	CPSF1	100	96.557	Papio_anubis
ENSODEG00000013995	CPSF1	100	80.900	ENSPKIG00000002582	cpsf1	100	81.259	Paramormyrops_kingsleyae
ENSODEG00000013995	CPSF1	100	93.306	ENSPCIG00000009035	CPSF1	100	93.306	Phascolarctos_cinereus
ENSODEG00000013995	CPSF1	100	76.710	ENSPFOG00000012870	cpsf1	100	76.710	Poecilia_formosa
ENSODEG00000013995	CPSF1	100	76.590	ENSPREG00000016307	cpsf1	100	76.590	Poecilia_reticulata
ENSODEG00000013995	CPSF1	100	88.627	ENSPPYG00000018973	CPSF1	100	88.627	Pongo_abelii
ENSODEG00000013995	CPSF1	91	95.170	ENSPCAG00000011541	CPSF1	94	95.170	Procavia_capensis
ENSODEG00000013995	CPSF1	100	93.620	ENSPCOG00000020001	CPSF1	100	93.620	Propithecus_coquereli
ENSODEG00000013995	CPSF1	91	99.143	ENSPVAG00000006761	CPSF1	91	99.143	Pteropus_vampyrus
ENSODEG00000013995	CPSF1	100	78.808	ENSPNYG00000004906	cpsf1	100	79.152	Pundamilia_nyererei
ENSODEG00000013995	CPSF1	100	75.190	ENSPNAG00000024395	cpsf1	100	75.190	Pygocentrus_nattereri
ENSODEG00000013995	CPSF1	100	97.918	ENSRNOG00000030705	Cpsf1	100	97.918	Rattus_norvegicus
ENSODEG00000013995	CPSF1	100	96.671	ENSRBIG00000044907	CPSF1	100	96.671	Rhinopithecus_bieti
ENSODEG00000013995	CPSF1	100	96.602	ENSRROG00000044861	CPSF1	100	96.602	Rhinopithecus_roxellana
ENSODEG00000013995	CPSF1	97	96.628	ENSSBOG00000027177	CPSF1	100	96.628	Saimiri_boliviensis_boliviensis
ENSODEG00000013995	CPSF1	100	93.237	ENSSHAG00000006500	CPSF1	100	93.237	Sarcophilus_harrisii
ENSODEG00000013995	CPSF1	100	78.360	ENSSFOG00015004606	cpsf1	100	81.587	Scleropages_formosus
ENSODEG00000013995	CPSF1	100	78.334	ENSSMAG00000020547	cpsf1	100	78.402	Scophthalmus_maximus
ENSODEG00000013995	CPSF1	100	79.599	ENSSDUG00000001100	cpsf1	100	79.876	Seriola_dumerili
ENSODEG00000013995	CPSF1	100	79.654	ENSSLDG00000003619	cpsf1	100	79.792	Seriola_lalandi_dorsalis
ENSODEG00000013995	CPSF1	89	100.000	ENSSARG00000003643	CPSF1	92	100.000	Sorex_araneus
ENSODEG00000013995	CPSF1	96	87.671	ENSSPUG00000014396	CPSF1	100	87.671	Sphenodon_punctatus
ENSODEG00000013995	CPSF1	100	78.281	ENSSPAG00000005349	cpsf1	100	78.417	Stegastes_partitus
ENSODEG00000013995	CPSF1	100	95.914	ENSSSCG00000005906	CPSF1	100	95.914	Sus_scrofa
ENSODEG00000013995	CPSF1	96	78.081	ENSTRUG00000013134	cpsf1	99	78.221	Takifugu_rubripes
ENSODEG00000013995	CPSF1	100	78.832	ENSTNIG00000014027	cpsf1	100	78.900	Tetraodon_nigroviridis
ENSODEG00000013995	CPSF1	77	89.483	ENSTBEG00000001756	CPSF1	91	89.483	Tupaia_belangeri
ENSODEG00000013995	CPSF1	90	97.237	ENSTTRG00000001937	CPSF1	90	97.237	Tursiops_truncatus
ENSODEG00000013995	CPSF1	97	96.781	ENSUAMG00000006476	CPSF1	98	96.781	Ursus_americanus
ENSODEG00000013995	CPSF1	100	77.785	ENSXCOG00000003608	cpsf1	100	78.062	Xiphophorus_couchianus
ENSODEG00000013995	CPSF1	100	77.263	ENSXMAG00000005798	cpsf1	100	77.471	Xiphophorus_maculatus