EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000015482 (Gene tree)
Gene ID: -
Gene Symbol: PABPC1L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 32115 bases
Position: chrJH651552.1:16135910-16168024
Accession: 101588203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000021008	PABP	PF00658.18	3.5e-09	1	1
ENSODEP00000021008	RRM_5	PF13893.6	7.4e-11	1	1
ENSODEP00000021008	RRM_1	PF00076.22	6.7e-88	1	4
ENSODEP00000021008	RRM_1	PF00076.22	6.7e-88	2	4
ENSODEP00000021008	RRM_1	PF00076.22	6.7e-88	3	4
ENSODEP00000021008	RRM_1	PF00076.22	6.7e-88	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000021265	PABPC1L-201	1629	XM_004631018	ENSODEP00000021008	542 (aa)	-	-

Gene Model

Click here to download ENSODEG00000015482's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000015482's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000015482	PABPC1L	81	66.893	ENSODEG00000013269	-	87	66.827
ENSODEG00000015482	PABPC1L	56	36.986	ENSODEG00000018464	CELF4	64	36.986
ENSODEG00000015482	PABPC1L	97	60.900	ENSODEG00000003229	PABPC1	93	60.900
ENSODEG00000015482	PABPC1L	61	69.784	ENSODEG00000013457	-	99	69.784
ENSODEG00000015482	PABPC1L	61	34.211	ENSODEG00000015204	CELF1	65	34.211
ENSODEG00000015482	PABPC1L	65	73.125	ENSODEG00000002920	-	97	73.125
ENSODEG00000015482	PABPC1L	99	60.616	ENSODEG00000006592	-	98	61.102
ENSODEG00000015482	PABPC1L	97	50.542	ENSODEG00000017434	-	97	51.410
ENSODEG00000015482	PABPC1L	52	38.554	ENSODEG00000014460	CELF5	63	36.957
ENSODEG00000015482	PABPC1L	57	35.616	ENSODEG00000010505	CELF3	73	35.616
ENSODEG00000015482	PABPC1L	68	68.528	ENSODEG00000018540	-	99	68.528
ENSODEG00000015482	PABPC1L	69	34.940	ENSODEG00000002531	ELAVL2	92	34.940
ENSODEG00000015482	PABPC1L	69	33.735	ENSODEG00000015790	ELAVL3	90	33.735
ENSODEG00000015482	PABPC1L	58	36.986	ENSODEG00000015399	-	71	36.986

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000015482	PABPC1L	100	76.221	ENSG00000101104	PABPC1L	99	89.506	Homo_sapiens
ENSODEG00000015482	PABPC1L	98	60.826	ENSAPOG00000010842	pabpc1l	98	60.826	Acanthochromis_polyacanthus
ENSODEG00000015482	PABPC1L	88	90.073	ENSAMEG00000004099	PABPC1L	79	90.073	Ailuropoda_melanoleuca
ENSODEG00000015482	PABPC1L	98	63.080	ENSACIG00000021004	-	99	63.080	Amphilophus_citrinellus
ENSODEG00000015482	PABPC1L	99	59.615	ENSAOCG00000006167	-	99	59.551	Amphiprion_ocellaris
ENSODEG00000015482	PABPC1L	98	62.010	ENSAPEG00000010558	-	97	77.723	Amphiprion_percula
ENSODEG00000015482	PABPC1L	99	61.905	ENSATEG00000007428	pabpc1l	99	61.688	Anabas_testudineus
ENSODEG00000015482	PABPC1L	97	65.359	ENSAPLG00000008415	PABPC1L	98	65.472	Anas_platyrhynchos
ENSODEG00000015482	PABPC1L	99	65.329	ENSACAG00000011841	PABPC1L	98	65.329	Anolis_carolinensis
ENSODEG00000015482	PABPC1L	100	74.267	ENSANAG00000026826	PABPC1L	100	74.267	Aotus_nancymaae
ENSODEG00000015482	PABPC1L	99	59.325	ENSACLG00000024791	pabpc1l	99	59.325	Astatotilapia_calliptera
ENSODEG00000015482	PABPC1L	99	62.963	ENSAMXG00000013552	pabpc1l	99	62.963	Astyanax_mexicanus
ENSODEG00000015482	PABPC1L	70	80.816	ENSBTAG00000016849	PABPC1L	74	80.816	Bos_taurus
ENSODEG00000015482	PABPC1L	63	94.048	ENSBTAG00000055300	-	100	94.048	Bos_taurus
ENSODEG00000015482	PABPC1L	100	74.430	ENSCJAG00000017628	PABPC1L	100	74.430	Callithrix_jacchus
ENSODEG00000015482	PABPC1L	68	75.287	ENSCJAG00000038506	-	100	75.287	Callithrix_jacchus
ENSODEG00000015482	PABPC1L	90	87.324	ENSCAFG00000009573	PABPC1L	80	87.324	Canis_familiaris
ENSODEG00000015482	PABPC1L	99	74.590	ENSCAFG00020013828	PABPC1L	99	74.590	Canis_lupus_dingo
ENSODEG00000015482	PABPC1L	96	79.323	ENSCHIG00000025759	PABPC1L	86	79.323	Capra_hircus
ENSODEG00000015482	PABPC1L	100	73.453	ENSTSYG00000006645	PABPC1L	100	73.453	Carlito_syrichta
ENSODEG00000015482	PABPC1L	99	78.860	ENSCAPG00000014519	PABPC1L	100	78.860	Cavia_aperea
ENSODEG00000015482	PABPC1L	100	82.201	ENSCPOG00000013633	PABPC1L	100	82.201	Cavia_porcellus
ENSODEG00000015482	PABPC1L	100	74.104	ENSCCAG00000023338	PABPC1L	100	74.593	Cebus_capucinus
ENSODEG00000015482	PABPC1L	100	76.059	ENSCATG00000034065	PABPC1L	100	76.059	Cercocebus_atys
ENSODEG00000015482	PABPC1L	100	82.039	ENSCLAG00000005298	PABPC1L	100	82.524	Chinchilla_lanigera
ENSODEG00000015482	PABPC1L	100	76.221	ENSCSAG00000014242	PABPC1L	100	76.221	Chlorocebus_sabaeus
ENSODEG00000015482	PABPC1L	76	80.435	ENSCPBG00000017755	-	93	80.435	Chrysemys_picta_bellii
ENSODEG00000015482	PABPC1L	61	79.545	ENSCPBG00000007810	-	83	79.545	Chrysemys_picta_bellii
ENSODEG00000015482	PABPC1L	96	44.033	ENSCING00000002796	-	97	44.033	Ciona_intestinalis
ENSODEG00000015482	PABPC1L	96	66.429	ENSCSAVG00000004246	-	89	66.429	Ciona_savignyi
ENSODEG00000015482	PABPC1L	96	54.336	ENSCSAVG00000003102	-	100	78.767	Ciona_savignyi
ENSODEG00000015482	PABPC1L	100	70.880	ENSCANG00000037530	PABPC1L	100	70.880	Colobus_angolensis_palliatus
ENSODEG00000015482	PABPC1L	99	68.618	ENSCGRG00001021938	Pabpc1l	99	68.618	Cricetulus_griseus_chok1gshd
ENSODEG00000015482	PABPC1L	99	68.618	ENSCGRG00000007946	Pabpc1l	99	68.618	Cricetulus_griseus_crigri
ENSODEG00000015482	PABPC1L	98	63.251	ENSCSEG00000021295	pabpc1l	99	63.251	Cynoglossus_semilaevis
ENSODEG00000015482	PABPC1L	99	64.675	ENSCVAG00000015943	-	99	74.834	Cyprinodon_variegatus
ENSODEG00000015482	PABPC1L	99	63.209	ENSDARG00000002597	pabpc1l	88	83.077	Danio_rerio
ENSODEG00000015482	PABPC1L	99	74.878	ENSDNOG00000048450	PABPC1L	99	74.878	Dasypus_novemcinctus
ENSODEG00000015482	PABPC1L	100	75.081	ENSDORG00000001067	Pabpc1l	100	75.081	Dipodomys_ordii
ENSODEG00000015482	PABPC1L	99	86.585	ENSETEG00000009969	PABPC1L	68	86.585	Echinops_telfairi
ENSODEG00000015482	PABPC1L	63	92.857	ENSEASG00005023408	-	100	92.857	Equus_asinus_asinus
ENSODEG00000015482	PABPC1L	58	85.093	ENSEASG00005023407	-	65	85.093	Equus_asinus_asinus
ENSODEG00000015482	PABPC1L	70	81.395	ENSECAG00000040139	-	78	81.395	Equus_caballus
ENSODEG00000015482	PABPC1L	100	72.549	ENSEEUG00000005978	PABPC1L	100	72.549	Erinaceus_europaeus
ENSODEG00000015482	PABPC1L	99	65.614	ENSELUG00000001811	pabpc1l	99	65.614	Esox_lucius
ENSODEG00000015482	PABPC1L	99	75.410	ENSFCAG00000011692	PABPC1L	99	75.410	Felis_catus
ENSODEG00000015482	PABPC1L	91	68.216	ENSFALG00000005372	PABPC1L	90	68.216	Ficedula_albicollis
ENSODEG00000015482	PABPC1L	100	80.198	ENSFDAG00000008291	PABPC1L	100	80.198	Fukomys_damarensis
ENSODEG00000015482	PABPC1L	99	61.175	ENSFHEG00000003398	pabpc1l	99	61.175	Fundulus_heteroclitus
ENSODEG00000015482	PABPC1L	99	62.029	ENSGMOG00000004437	pabpc1l	98	62.029	Gadus_morhua
ENSODEG00000015482	PABPC1L	97	69.346	ENSGALG00000004123	PABPC1L	98	80.387	Gallus_gallus
ENSODEG00000015482	PABPC1L	99	58.025	ENSGAFG00000021057	pabpc1l	99	58.025	Gambusia_affinis
ENSODEG00000015482	PABPC1L	99	59.486	ENSGACG00000002792	pabpc1l	99	59.486	Gasterosteus_aculeatus
ENSODEG00000015482	PABPC1L	99	69.069	ENSGAGG00000000589	PABPC1L	98	69.069	Gopherus_agassizii
ENSODEG00000015482	PABPC1L	100	76.221	ENSGGOG00000004584	PABPC1L	100	76.221	Gorilla_gorilla
ENSODEG00000015482	PABPC1L	99	63.748	ENSHBUG00000006134	pabpc1l	99	63.748	Haplochromis_burtoni
ENSODEG00000015482	PABPC1L	100	81.301	ENSHGLG00000008434	PABPC1L	100	81.301	Heterocephalus_glaber_female
ENSODEG00000015482	PABPC1L	100	81.301	ENSHGLG00100012151	PABPC1L	100	81.301	Heterocephalus_glaber_male
ENSODEG00000015482	PABPC1L	68	79.213	ENSHGLG00100019506	-	100	79.213	Heterocephalus_glaber_male
ENSODEG00000015482	PABPC1L	98	62.543	ENSHCOG00000009270	pabpc1l	99	62.543	Hippocampus_comes
ENSODEG00000015482	PABPC1L	67	59.195	ENSIPUG00000006760	-	88	59.195	Ictalurus_punctatus
ENSODEG00000015482	PABPC1L	99	67.073	ENSIPUG00000012602	pabpc1l	99	67.073	Ictalurus_punctatus
ENSODEG00000015482	PABPC1L	68	54.774	ENSIPUG00000006780	-	96	54.774	Ictalurus_punctatus
ENSODEG00000015482	PABPC1L	100	76.873	ENSSTOG00000003739	PABPC1L	100	76.873	Ictidomys_tridecemlineatus
ENSODEG00000015482	PABPC1L	82	60.367	ENSJJAG00000022406	Pabpc1l	99	58.429	Jaculus_jaculus
ENSODEG00000015482	PABPC1L	99	62.562	ENSKMAG00000016847	pabpc1l	99	62.562	Kryptolebias_marmoratus
ENSODEG00000015482	PABPC1L	99	60.365	ENSLBEG00000010084	pabpc1l	99	60.365	Labrus_bergylta
ENSODEG00000015482	PABPC1L	99	60.731	ENSLACG00000005762	PABPC1L	99	65.441	Latimeria_chalumnae
ENSODEG00000015482	PABPC1L	99	63.082	ENSLOCG00000007519	pabpc1l	98	63.082	Lepisosteus_oculatus
ENSODEG00000015482	PABPC1L	99	71.680	ENSLAFG00000003553	PABPC1L	100	71.680	Loxodonta_africana
ENSODEG00000015482	PABPC1L	100	75.896	ENSMFAG00000040365	PABPC1L	100	75.896	Macaca_fascicularis
ENSODEG00000015482	PABPC1L	100	72.934	ENSMNEG00000032298	PABPC1L	100	72.934	Macaca_nemestrina
ENSODEG00000015482	PABPC1L	100	76.059	ENSMLEG00000043139	PABPC1L	100	76.059	Mandrillus_leucophaeus
ENSODEG00000015482	PABPC1L	96	62.134	ENSMAMG00000011854	pabpc1l	93	62.134	Mastacembelus_armatus
ENSODEG00000015482	PABPC1L	99	59.325	ENSMZEG00005023713	pabpc1l	99	59.325	Maylandia_zebra
ENSODEG00000015482	PABPC1L	99	66.181	ENSMGAG00000003674	PABPC1L	98	66.181	Meleagris_gallopavo
ENSODEG00000015482	PABPC1L	99	68.249	ENSMOCG00000013186	Pabpc1l	99	68.249	Microtus_ochrogaster
ENSODEG00000015482	PABPC1L	99	61.186	ENSMMOG00000020574	-	90	83.077	Mola_mola
ENSODEG00000015482	PABPC1L	96	72.695	ENSMODG00000016198	PABPC1L	95	72.695	Monodelphis_domestica
ENSODEG00000015482	PABPC1L	96	61.102	ENSMALG00000021622	pabpc1l	96	61.102	Monopterus_albus
ENSODEG00000015482	PABPC1L	99	70.066	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	70.066	Mus_caroli
ENSODEG00000015482	PABPC1L	99	69.901	ENSMUSG00000054582	Pabpc1l	99	69.901	Mus_musculus
ENSODEG00000015482	PABPC1L	99	68.679	MGP_PahariEiJ_G0026071	Pabpc1l	99	68.679	Mus_pahari
ENSODEG00000015482	PABPC1L	99	69.901	MGP_SPRETEiJ_G0025549	Pabpc1l	99	69.901	Mus_spretus
ENSODEG00000015482	PABPC1L	99	73.065	ENSMPUG00000017646	PABPC1L	99	73.065	Mustela_putorius_furo
ENSODEG00000015482	PABPC1L	96	71.672	ENSMLUG00000006324	PABPC1L	92	71.672	Myotis_lucifugus
ENSODEG00000015482	PABPC1L	100	70.759	ENSNGAG00000010458	Pabpc1l	100	70.759	Nannospalax_galili
ENSODEG00000015482	PABPC1L	99	62.842	ENSNBRG00000016633	pabpc1l	99	62.842	Neolamprologus_brichardi
ENSODEG00000015482	PABPC1L	100	63.399	ENSMEUG00000007905	-	100	63.399	Notamacropus_eugenii
ENSODEG00000015482	PABPC1L	100	73.171	ENSOPRG00000011846	PABPC1L	100	73.171	Ochotona_princeps
ENSODEG00000015482	PABPC1L	99	59.646	ENSONIG00000017314	pabpc1l	99	59.646	Oreochromis_niloticus
ENSODEG00000015482	PABPC1L	93	63.472	ENSOANG00000015793	-	100	63.472	Ornithorhynchus_anatinus
ENSODEG00000015482	PABPC1L	99	68.266	ENSOCUG00000003005	PABPC1L	100	68.266	Oryctolagus_cuniculus
ENSODEG00000015482	PABPC1L	99	62.937	ENSORLG00000010322	pabpc1l	99	62.937	Oryzias_latipes
ENSODEG00000015482	PABPC1L	96	65.478	ENSORLG00020021193	pabpc1l	99	61.308	Oryzias_latipes_hni
ENSODEG00000015482	PABPC1L	96	65.666	ENSORLG00015017018	pabpc1l	99	61.121	Oryzias_latipes_hsok
ENSODEG00000015482	PABPC1L	99	57.362	ENSOMEG00000010789	pabpc1l	99	57.362	Oryzias_melastigma
ENSODEG00000015482	PABPC1L	99	73.718	ENSOGAG00000032999	PABPC1L	100	73.718	Otolemur_garnettii
ENSODEG00000015482	PABPC1L	99	75.082	ENSOARG00000004578	PABPC1L	99	75.082	Ovis_aries
ENSODEG00000015482	PABPC1L	100	76.059	ENSPPAG00000039677	PABPC1L	100	76.059	Pan_paniscus
ENSODEG00000015482	PABPC1L	71	77.778	ENSPPRG00000019327	-	98	77.778	Panthera_pardus
ENSODEG00000015482	PABPC1L	98	75.581	ENSPTIG00000006524	PABPC1L	99	75.581	Panthera_tigris_altaica
ENSODEG00000015482	PABPC1L	71	89.198	ENSPTRG00000013531	PABPC1L	99	89.198	Pan_troglodytes
ENSODEG00000015482	PABPC1L	100	76.059	ENSPANG00000018788	PABPC1L	100	76.059	Papio_anubis
ENSODEG00000015482	PABPC1L	60	79.231	ENSPKIG00000016810	-	93	79.231	Paramormyrops_kingsleyae
ENSODEG00000015482	PABPC1L	99	63.871	ENSPKIG00000007322	pabpc1l	99	63.871	Paramormyrops_kingsleyae
ENSODEG00000015482	PABPC1L	76	79.903	ENSPSIG00000013289	PABPC1L	98	79.903	Pelodiscus_sinensis
ENSODEG00000015482	PABPC1L	76	69.880	ENSPMGG00000023121	-	80	69.880	Periophthalmus_magnuspinnatus
ENSODEG00000015482	PABPC1L	69	74.884	ENSPMGG00000023117	pabpc1l	92	81.818	Periophthalmus_magnuspinnatus
ENSODEG00000015482	PABPC1L	99	68.586	ENSPEMG00000020671	Pabpc1l	99	68.301	Peromyscus_maniculatus_bairdii
ENSODEG00000015482	PABPC1L	99	62.479	ENSPFOG00000013241	pabpc1l	98	62.479	Poecilia_formosa
ENSODEG00000015482	PABPC1L	99	64.499	ENSPLAG00000017490	-	99	64.499	Poecilia_latipinna
ENSODEG00000015482	PABPC1L	60	83.206	ENSPLAG00000023686	-	92	83.206	Poecilia_latipinna
ENSODEG00000015482	PABPC1L	60	83.206	ENSPMEG00000009185	-	89	83.206	Poecilia_mexicana
ENSODEG00000015482	PABPC1L	99	61.238	ENSPMEG00000007677	pabpc1l	99	61.238	Poecilia_mexicana
ENSODEG00000015482	PABPC1L	76	74.334	ENSPREG00000015886	pabpc1l	99	74.334	Poecilia_reticulata
ENSODEG00000015482	PABPC1L	100	76.547	ENSPPYG00000011042	PABPC1L	100	76.547	Pongo_abelii
ENSODEG00000015482	PABPC1L	70	85.938	ENSPCAG00000011787	-	75	85.938	Procavia_capensis
ENSODEG00000015482	PABPC1L	99	74.794	ENSPCOG00000020630	PABPC1L	99	74.794	Propithecus_coquereli
ENSODEG00000015482	PABPC1L	99	72.177	ENSPVAG00000012663	PABPC1L	100	72.177	Pteropus_vampyrus
ENSODEG00000015482	PABPC1L	99	62.264	ENSPNYG00000004101	pabpc1l	99	62.264	Pundamilia_nyererei
ENSODEG00000015482	PABPC1L	99	57.120	ENSPNAG00000021248	pabpc1l	99	57.120	Pygocentrus_nattereri
ENSODEG00000015482	PABPC1L	99	68.241	ENSRNOG00000012750	Pabpc1l	100	67.961	Rattus_norvegicus
ENSODEG00000015482	PABPC1L	100	76.059	ENSRBIG00000035381	PABPC1L	100	76.059	Rhinopithecus_bieti
ENSODEG00000015482	PABPC1L	100	75.896	ENSRROG00000044498	PABPC1L	100	75.896	Rhinopithecus_roxellana
ENSODEG00000015482	PABPC1L	100	73.941	ENSSBOG00000009532	-	100	73.941	Saimiri_boliviensis_boliviensis
ENSODEG00000015482	PABPC1L	97	62.140	ENSSHAG00000011446	PABPC1L	100	62.140	Sarcophilus_harrisii
ENSODEG00000015482	PABPC1L	99	63.987	ENSSFOG00015017304	pabpc1l	99	63.987	Scleropages_formosus
ENSODEG00000015482	PABPC1L	98	63.766	ENSSMAG00000010516	pabpc1l	98	82.946	Scophthalmus_maximus
ENSODEG00000015482	PABPC1L	99	60.548	ENSSDUG00000014743	pabpc1l	99	60.548	Seriola_dumerili
ENSODEG00000015482	PABPC1L	99	62.063	ENSSLDG00000006981	pabpc1l	99	74.429	Seriola_lalandi_dorsalis
ENSODEG00000015482	PABPC1L	99	64.000	ENSSPUG00000004233	PABPC1L	98	64.000	Sphenodon_punctatus
ENSODEG00000015482	PABPC1L	98	63.251	ENSSPAG00000017137	pabpc1l	99	63.251	Stegastes_partitus
ENSODEG00000015482	PABPC1L	99	74.129	ENSSSCG00000007382	PABPC1L	99	74.129	Sus_scrofa
ENSODEG00000015482	PABPC1L	99	64.669	ENSTGUG00000005114	PABPC1L	99	64.669	Taeniopygia_guttata
ENSODEG00000015482	PABPC1L	96	64.870	ENSTRUG00000011085	pabpc1l	93	64.870	Takifugu_rubripes
ENSODEG00000015482	PABPC1L	99	59.486	ENSTNIG00000017903	pabpc1l	99	59.486	Tetraodon_nigroviridis
ENSODEG00000015482	PABPC1L	94	89.041	ENSTBEG00000002851	PABPC1L	73	89.041	Tupaia_belangeri
ENSODEG00000015482	PABPC1L	96	76.148	ENSTTRG00000007618	PABPC1L	96	76.148	Tursiops_truncatus
ENSODEG00000015482	PABPC1L	99	73.554	ENSUAMG00000017682	PABPC1L	99	73.554	Ursus_americanus
ENSODEG00000015482	PABPC1L	75	89.296	ENSUMAG00000025436	PABPC1L	91	89.296	Ursus_maritimus
ENSODEG00000015482	PABPC1L	99	72.667	ENSVVUG00000018939	PABPC1L	99	72.667	Vulpes_vulpes
ENSODEG00000015482	PABPC1L	99	61.514	ENSXETG00000022831	pabpc1l	98	61.514	Xenopus_tropicalis
ENSODEG00000015482	PABPC1L	98	62.804	ENSXCOG00000005459	pabpc1l	99	79.433	Xiphophorus_couchianus
ENSODEG00000015482	PABPC1L	99	63.972	ENSXMAG00000017135	pabpc1l	99	63.972	Xiphophorus_maculatus