EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000016060 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: small nuclear ribonucleoprotein-associated proteins B and B' pseudogene
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 725 bases
Position: chrJH651517.1:25389192-25389916
Accession: 101585486
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000021839	LSM	PF01423.22	2.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000022099	-	696	-	ENSODEP00000021839	231 (aa)	-	-

Gene Model

Click here to download ENSODEG00000016060's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000016060's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000016060	-	90	88.732	ENSODEG00000020110	-	82	88.776
ENSODEG00000016060	-	90	89.202	ENSODEG00000013478	-	82	89.286
ENSODEG00000016060	-	90	88.732	ENSODEG00000019708	-	82	88.776
ENSODEG00000016060	-	97	76.923	ENSODEG00000016065	-	73	83.230
ENSODEG00000016060	-	95	96.460	ENSODEG00000004305	-	98	96.460

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000016060	-	100	95.417	ENSG00000125835	SNRPB	100	95.417	Homo_sapiens
ENSODEG00000016060	-	76	87.845	ENSAPOG00000019606	snrpb	56	89.286	Acanthochromis_polyacanthus
ENSODEG00000016060	-	99	95.397	ENSAMEG00000011353	SNRPB	98	95.397	Ailuropoda_melanoleuca
ENSODEG00000016060	-	73	86.857	ENSACIG00000014480	snrpb	71	88.889	Amphilophus_citrinellus
ENSODEG00000016060	-	76	87.845	ENSAOCG00000006876	snrpb	69	89.286	Amphiprion_ocellaris
ENSODEG00000016060	-	76	87.845	ENSAPEG00000021585	snrpb	71	89.286	Amphiprion_percula
ENSODEG00000016060	-	76	87.293	ENSATEG00000009836	snrpb	69	88.690	Anabas_testudineus
ENSODEG00000016060	-	76	91.713	ENSACAG00000002053	SNRPB	78	90.608	Anolis_carolinensis
ENSODEG00000016060	-	100	95.417	ENSANAG00000024443	-	100	95.417	Aotus_nancymaae
ENSODEG00000016060	-	90	90.233	ENSANAG00000036271	-	71	88.889	Aotus_nancymaae
ENSODEG00000016060	-	76	87.845	ENSACLG00000014707	snrpb	69	89.286	Astatotilapia_calliptera
ENSODEG00000016060	-	77	87.978	ENSAMXG00000029434	snrpb	70	88.690	Astyanax_mexicanus
ENSODEG00000016060	-	95	96.018	ENSBTAG00000001038	SNRPB	98	96.018	Bos_taurus
ENSODEG00000016060	-	95	96.460	ENSCJAG00000020971	-	98	96.460	Callithrix_jacchus
ENSODEG00000016060	-	90	88.785	ENSCJAG00000023097	-	79	86.772	Callithrix_jacchus
ENSODEG00000016060	-	95	96.460	ENSCAFG00000006693	-	98	96.460	Canis_familiaris
ENSODEG00000016060	-	79	85.263	ENSCAFG00000031109	-	79	83.598	Canis_familiaris
ENSODEG00000016060	-	100	95.417	ENSCAFG00020016981	-	100	95.417	Canis_lupus_dingo
ENSODEG00000016060	-	95	96.018	ENSCHIG00000025449	-	98	96.018	Capra_hircus
ENSODEG00000016060	-	95	96.460	ENSTSYG00000014498	-	98	96.460	Carlito_syrichta
ENSODEG00000016060	-	95	73.778	ENSTSYG00000032303	-	68	69.312	Carlito_syrichta
ENSODEG00000016060	-	99	95.397	ENSCAPG00000012669	SNRPB	98	96.444	Cavia_aperea
ENSODEG00000016060	-	95	96.460	ENSCPOG00000039408	SNRPB	98	96.460	Cavia_porcellus
ENSODEG00000016060	-	100	95.417	ENSCCAG00000026002	SNRPB	100	95.417	Cebus_capucinus
ENSODEG00000016060	-	52	82.677	ENSCCAG00000035140	-	89	84.314	Cebus_capucinus
ENSODEG00000016060	-	95	96.460	ENSCATG00000030230	SNRPB	98	96.460	Cercocebus_atys
ENSODEG00000016060	-	100	96.624	ENSCLAG00000012442	SNRPB	100	96.624	Chinchilla_lanigera
ENSODEG00000016060	-	95	96.460	ENSCSAG00000010840	SNRPB	98	96.460	Chlorocebus_sabaeus
ENSODEG00000016060	-	79	93.122	ENSCPBG00000026801	SNRPB	82	92.063	Chrysemys_picta_bellii
ENSODEG00000016060	-	100	95.417	ENSCANG00000019461	SNRPB	100	95.417	Colobus_angolensis_palliatus
ENSODEG00000016060	-	95	96.460	ENSCGRG00001023046	Snrpb	98	96.460	Cricetulus_griseus_chok1gshd
ENSODEG00000016060	-	92	96.330	ENSCGRG00000010423	Snrpb	97	96.330	Cricetulus_griseus_crigri
ENSODEG00000016060	-	77	87.432	ENSCSEG00000020328	snrpb	70	89.286	Cynoglossus_semilaevis
ENSODEG00000016060	-	70	88.095	ENSDARG00000011125	snrpb	69	89.286	Danio_rerio
ENSODEG00000016060	-	72	90.173	ENSDNOG00000007896	-	71	88.439	Dasypus_novemcinctus
ENSODEG00000016060	-	100	95.417	ENSDNOG00000015545	-	100	95.417	Dasypus_novemcinctus
ENSODEG00000016060	-	96	94.783	ENSDORG00000029558	Snrpb	100	94.783	Dipodomys_ordii
ENSODEG00000016060	-	62	69.388	FBgn0262601	SmB	74	69.388	Drosophila_melanogaster
ENSODEG00000016060	-	95	81.858	ENSETEG00000006830	SNRPB	99	81.858	Echinops_telfairi
ENSODEG00000016060	-	76	75.269	ENSEBUG00000007467	SNRPB	62	82.550	Eptatretus_burgeri
ENSODEG00000016060	-	95	96.018	ENSEASG00005012991	SNRPB	98	96.018	Equus_asinus_asinus
ENSODEG00000016060	-	95	96.460	ENSECAG00000011944	SNRPB	98	96.460	Equus_caballus
ENSODEG00000016060	-	95	96.460	ENSEEUG00000015568	SNRPB	80	96.460	Erinaceus_europaeus
ENSODEG00000016060	-	60	89.655	ENSELUG00000014564	snrpb	71	87.654	Esox_lucius
ENSODEG00000016060	-	95	96.460	ENSFCAG00000034090	-	98	96.460	Felis_catus
ENSODEG00000016060	-	76	92.265	ENSFALG00000004866	SNRPB	78	91.160	Ficedula_albicollis
ENSODEG00000016060	-	99	95.397	ENSFDAG00000009937	SNRPB	98	96.460	Fukomys_damarensis
ENSODEG00000016060	-	79	92.593	ENSGALG00000035421	SNRPN	79	91.534	Gallus_gallus
ENSODEG00000016060	-	72	87.791	ENSGAFG00000019558	snrpb	72	88.623	Gambusia_affinis
ENSODEG00000016060	-	77	86.339	ENSGACG00000003262	snrpb	70	89.286	Gasterosteus_aculeatus
ENSODEG00000016060	-	79	93.122	ENSGAGG00000001308	SNRPB	79	92.063	Gopherus_agassizii
ENSODEG00000016060	-	95	96.460	ENSGGOG00000016138	SNRPB	98	96.460	Gorilla_gorilla
ENSODEG00000016060	-	76	87.845	ENSHBUG00000008369	snrpb	69	89.286	Haplochromis_burtoni
ENSODEG00000016060	-	62	85.333	ENSHGLG00000016505	-	72	83.333	Heterocephalus_glaber_female
ENSODEG00000016060	-	95	96.460	ENSHGLG00000016241	-	98	96.460	Heterocephalus_glaber_female
ENSODEG00000016060	-	100	95.417	ENSHGLG00100012877	-	100	95.417	Heterocephalus_glaber_male
ENSODEG00000016060	-	62	85.333	ENSHGLG00100004178	-	72	83.333	Heterocephalus_glaber_male
ENSODEG00000016060	-	77	87.432	ENSHCOG00000014888	snrpb	70	89.286	Hippocampus_comes
ENSODEG00000016060	-	70	88.095	ENSIPUG00000024569	SNRPB	70	89.286	Ictalurus_punctatus
ENSODEG00000016060	-	100	93.750	ENSSTOG00000033664	-	100	93.750	Ictidomys_tridecemlineatus
ENSODEG00000016060	-	80	75.916	ENSSTOG00000027821	-	62	91.912	Ictidomys_tridecemlineatus
ENSODEG00000016060	-	95	96.460	ENSJJAG00000024170	Snrpb	98	96.460	Jaculus_jaculus
ENSODEG00000016060	-	72	89.017	ENSKMAG00000014494	snrpb	68	89.881	Kryptolebias_marmoratus
ENSODEG00000016060	-	77	87.432	ENSLBEG00000005678	snrpb	70	89.286	Labrus_bergylta
ENSODEG00000016060	-	79	88.360	ENSLACG00000011459	SNRPB	79	88.360	Latimeria_chalumnae
ENSODEG00000016060	-	70	88.690	ENSLOCG00000002687	snrpb	70	89.881	Lepisosteus_oculatus
ENSODEG00000016060	-	78	91.444	ENSLAFG00000017588	SNRPB	81	89.894	Loxodonta_africana
ENSODEG00000016060	-	95	96.460	ENSMFAG00000038756	SNRPB	98	96.460	Macaca_fascicularis
ENSODEG00000016060	-	95	96.460	ENSMMUG00000010050	SNRPB	98	96.460	Macaca_mulatta
ENSODEG00000016060	-	95	96.460	ENSMNEG00000027954	SNRPB	98	96.460	Macaca_nemestrina
ENSODEG00000016060	-	100	95.417	ENSMLEG00000022346	SNRPB	100	95.417	Mandrillus_leucophaeus
ENSODEG00000016060	-	75	87.778	ENSMAMG00000009294	snrpb	67	89.222	Mastacembelus_armatus
ENSODEG00000016060	-	76	87.845	ENSMZEG00005011856	snrpb	69	89.286	Maylandia_zebra
ENSODEG00000016060	-	76	86.740	ENSMICG00000015983	-	77	85.119	Microcebus_murinus
ENSODEG00000016060	-	95	96.018	ENSMICG00000016519	SNRPB	98	96.018	Microcebus_murinus
ENSODEG00000016060	-	95	96.018	ENSMOCG00000002892	-	98	96.018	Microtus_ochrogaster
ENSODEG00000016060	-	70	63.975	ENSMOCG00000021362	-	72	74.251	Microtus_ochrogaster
ENSODEG00000016060	-	76	87.363	ENSMMOG00000013226	snrpb	71	89.222	Mola_mola
ENSODEG00000016060	-	76	87.293	ENSMALG00000020839	snrpb	56	89.286	Monopterus_albus
ENSODEG00000016060	-	95	96.018	MGP_CAROLIEiJ_G0024293	Snrpb	98	96.018	Mus_caroli
ENSODEG00000016060	-	95	96.018	ENSMUSG00000027404	Snrpb	98	96.018	Mus_musculus
ENSODEG00000016060	-	95	96.018	MGP_PahariEiJ_G0025738	Snrpb	98	96.018	Mus_pahari
ENSODEG00000016060	-	95	96.018	MGP_SPRETEiJ_G0025213	Snrpb	98	96.018	Mus_spretus
ENSODEG00000016060	-	95	96.460	ENSMPUG00000009283	SNRPB	98	96.460	Mustela_putorius_furo
ENSODEG00000016060	-	79	92.593	ENSMLUG00000016951	SNRPB	78	91.005	Myotis_lucifugus
ENSODEG00000016060	-	95	96.460	ENSNGAG00000012051	Snrpb	98	96.460	Nannospalax_galili
ENSODEG00000016060	-	76	85.083	ENSNBRG00000006353	snrpb	62	87.805	Neolamprologus_brichardi
ENSODEG00000016060	-	100	95.417	ENSNLEG00000029067	SNRPB	100	95.417	Nomascus_leucogenys
ENSODEG00000016060	-	72	94.767	ENSMEUG00000015625	SNRPB	76	93.023	Notamacropus_eugenii
ENSODEG00000016060	-	76	87.845	ENSONIG00000000248	snrpb	69	89.286	Oreochromis_niloticus
ENSODEG00000016060	-	90	93.897	ENSOCUG00000028215	-	79	92.063	Oryctolagus_cuniculus
ENSODEG00000016060	-	90	90.698	ENSOCUG00000021456	-	78	91.534	Oryctolagus_cuniculus
ENSODEG00000016060	-	89	69.194	ENSOCUG00000026813	-	63	64.189	Oryctolagus_cuniculus
ENSODEG00000016060	-	75	89.385	ENSOCUG00000022423	-	86	90.476	Oryctolagus_cuniculus
ENSODEG00000016060	-	100	95.000	ENSOCUG00000014042	-	100	95.000	Oryctolagus_cuniculus
ENSODEG00000016060	-	76	87.293	ENSORLG00000021862	snrpb	69	89.286	Oryzias_latipes
ENSODEG00000016060	-	100	95.417	ENSOGAG00000016149	SNRPB	100	95.417	Otolemur_garnettii
ENSODEG00000016060	-	95	96.018	ENSOARG00000006740	SNRPB	98	96.018	Ovis_aries
ENSODEG00000016060	-	95	96.460	ENSPPAG00000036314	SNRPB	98	96.460	Pan_paniscus
ENSODEG00000016060	-	100	95.417	ENSPPRG00000003233	-	100	95.417	Panthera_pardus
ENSODEG00000016060	-	99	95.397	ENSPTIG00000007468	SNRPB	99	95.397	Panthera_tigris_altaica
ENSODEG00000016060	-	95	96.460	ENSPTRG00000013176	SNRPB	98	96.460	Pan_troglodytes
ENSODEG00000016060	-	100	95.417	ENSPANG00000020362	SNRPB	100	95.417	Papio_anubis
ENSODEG00000016060	-	70	87.500	ENSPKIG00000002865	snrpb	70	88.690	Paramormyrops_kingsleyae
ENSODEG00000016060	-	79	93.085	ENSPSIG00000014125	SNRPB	77	92.021	Pelodiscus_sinensis
ENSODEG00000016060	-	74	85.393	ENSPMGG00000016349	snrpb	69	86.503	Periophthalmus_magnuspinnatus
ENSODEG00000016060	-	95	96.460	ENSPEMG00000007948	Snrpb	98	96.460	Peromyscus_maniculatus_bairdii
ENSODEG00000016060	-	99	93.724	ENSPCIG00000004694	SNRPB	99	93.724	Phascolarctos_cinereus
ENSODEG00000016060	-	80	72.105	ENSPREG00000015515	snrpb	62	88.889	Poecilia_reticulata
ENSODEG00000016060	-	95	96.460	ENSPPYG00000010841	SNRPB	98	96.460	Pongo_abelii
ENSODEG00000016060	-	95	96.460	ENSPCOG00000013686	SNRPB	98	96.460	Propithecus_coquereli
ENSODEG00000016060	-	95	95.575	ENSPVAG00000017013	SNRPB	79	95.575	Pteropus_vampyrus
ENSODEG00000016060	-	76	87.845	ENSPNYG00000014788	snrpb	69	89.286	Pundamilia_nyererei
ENSODEG00000016060	-	77	87.978	ENSPNAG00000016126	snrpb	70	89.286	Pygocentrus_nattereri
ENSODEG00000016060	-	95	96.460	ENSRNOG00000006961	Snrpb	98	96.460	Rattus_norvegicus
ENSODEG00000016060	-	100	95.000	ENSRBIG00000040505	SNRPB	100	95.000	Rhinopithecus_bieti
ENSODEG00000016060	-	100	95.417	ENSRROG00000036094	SNRPB	100	95.417	Rhinopithecus_roxellana
ENSODEG00000016060	-	100	95.417	ENSSBOG00000027310	SNRPB	100	95.417	Saimiri_boliviensis_boliviensis
ENSODEG00000016060	-	100	93.750	ENSSHAG00000010394	SNRPB	100	93.750	Sarcophilus_harrisii
ENSODEG00000016060	-	70	86.905	ENSSFOG00015002870	snrpb	70	88.095	Scleropages_formosus
ENSODEG00000016060	-	77	86.339	ENSSMAG00000006766	snrpb	70	88.690	Scophthalmus_maximus
ENSODEG00000016060	-	76	87.845	ENSSDUG00000018539	snrpb	69	89.286	Seriola_dumerili
ENSODEG00000016060	-	76	87.845	ENSSLDG00000022391	snrpb	69	89.286	Seriola_lalandi_dorsalis
ENSODEG00000016060	-	72	80.814	ENSSARG00000003084	SNRPB	74	79.070	Sorex_araneus
ENSODEG00000016060	-	79	93.085	ENSSPUG00000015659	SNRPB	79	92.021	Sphenodon_punctatus
ENSODEG00000016060	-	76	87.845	ENSSPAG00000021992	snrpb	69	89.286	Stegastes_partitus
ENSODEG00000016060	-	89	76.415	ENSSSCG00000011966	-	91	75.120	Sus_scrofa
ENSODEG00000016060	-	95	96.018	ENSSSCG00000040857	-	98	96.018	Sus_scrofa
ENSODEG00000016060	-	74	75.706	ENSTGUG00000005684	SNRPB	59	90.000	Taeniopygia_guttata
ENSODEG00000016060	-	77	86.885	ENSTRUG00000023094	snrpb	72	88.690	Takifugu_rubripes
ENSODEG00000016060	-	77	86.885	ENSTNIG00000002991	snrpb	70	88.690	Tetraodon_nigroviridis
ENSODEG00000016060	-	70	95.833	ENSUAMG00000005984	-	80	93.452	Ursus_americanus
ENSODEG00000016060	-	57	94.161	ENSUMAG00000002123	-	64	89.928	Ursus_maritimus
ENSODEG00000016060	-	100	95.000	ENSVVUG00000025654	-	100	95.000	Vulpes_vulpes
ENSODEG00000016060	-	100	77.056	ENSVVUG00000010086	-	85	80.526	Vulpes_vulpes
ENSODEG00000016060	-	79	92.063	ENSXETG00000027266	snrpb	96	91.189	Xenopus_tropicalis
ENSODEG00000016060	-	80	71.579	ENSXMAG00000028767	snrpb	58	88.889	Xiphophorus_maculatus