EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000016214 (Gene tree)
Gene ID: 101563860
Gene Symbol: USB1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 10710 bases
Position: chrJH651526.1:25858683-25869392
Accession: 101563860
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000022069	HVSL	PF09749.9	3.5e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000022330	USB1-201	798	XM_004625937	ENSODEP00000022069	265 (aa)	XP_004625994	UPI000333A582

Gene Model

Click here to download ENSODEG00000016214's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000016214's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000016214	USB1	100	81.273	ENSG00000103005	USB1	100	85.047	Homo_sapiens
ENSODEG00000016214	USB1	98	48.561	ENSAPOG00000011942	usb1	99	48.561	Acanthochromis_polyacanthus
ENSODEG00000016214	USB1	100	80.669	ENSAMEG00000017205	USB1	100	80.669	Ailuropoda_melanoleuca
ENSODEG00000016214	USB1	83	55.157	ENSACIG00000012234	usb1	99	51.301	Amphilophus_citrinellus
ENSODEG00000016214	USB1	85	54.867	ENSAOCG00000014831	usb1	99	49.286	Amphiprion_ocellaris
ENSODEG00000016214	USB1	85	55.310	ENSAPEG00000000296	usb1	99	49.643	Amphiprion_percula
ENSODEG00000016214	USB1	91	52.049	ENSATEG00000009348	usb1	99	48.929	Anabas_testudineus
ENSODEG00000016214	USB1	84	68.142	ENSAPLG00000002756	USB1	100	68.142	Anas_platyrhynchos
ENSODEG00000016214	USB1	85	62.009	ENSACAG00000015481	USB1	100	62.009	Anolis_carolinensis
ENSODEG00000016214	USB1	100	80.524	ENSANAG00000035640	USB1	100	80.524	Aotus_nancymaae
ENSODEG00000016214	USB1	90	52.500	ENSACLG00000020586	usb1	99	49.821	Astatotilapia_calliptera
ENSODEG00000016214	USB1	83	49.776	ENSAMXG00000040146	usb1	95	44.291	Astyanax_mexicanus
ENSODEG00000016214	USB1	100	79.775	ENSBTAG00000015758	USB1	100	79.775	Bos_taurus
ENSODEG00000016214	USB1	100	82.022	ENSCJAG00000011733	USB1	100	82.022	Callithrix_jacchus
ENSODEG00000016214	USB1	99	79.044	ENSCAFG00000008556	USB1	73	79.044	Canis_familiaris
ENSODEG00000016214	USB1	99	80.970	ENSCAFG00020009263	USB1	99	80.970	Canis_lupus_dingo
ENSODEG00000016214	USB1	100	79.026	ENSCHIG00000024290	USB1	100	79.026	Capra_hircus
ENSODEG00000016214	USB1	100	80.524	ENSTSYG00000006997	USB1	100	81.273	Carlito_syrichta
ENSODEG00000016214	USB1	87	77.826	ENSCAPG00000009057	USB1	100	77.826	Cavia_aperea
ENSODEG00000016214	USB1	100	90.226	ENSCPOG00000014325	USB1	100	90.226	Cavia_porcellus
ENSODEG00000016214	USB1	100	81.273	ENSCCAG00000022132	USB1	100	81.273	Cebus_capucinus
ENSODEG00000016214	USB1	100	81.648	ENSCATG00000032174	USB1	100	82.397	Cercocebus_atys
ENSODEG00000016214	USB1	66	95.455	ENSCLAG00000007363	USB1	100	95.455	Chinchilla_lanigera
ENSODEG00000016214	USB1	100	82.397	ENSCSAG00000004783	USB1	100	82.397	Chlorocebus_sabaeus
ENSODEG00000016214	USB1	100	60.432	ENSCPBG00000026943	USB1	100	62.724	Chrysemys_picta_bellii
ENSODEG00000016214	USB1	100	80.524	ENSCANG00000037135	USB1	100	81.273	Colobus_angolensis_palliatus
ENSODEG00000016214	USB1	100	82.836	ENSCGRG00001011243	USB1	100	82.836	Cricetulus_griseus_chok1gshd
ENSODEG00000016214	USB1	100	82.836	ENSCGRG00000013252	USB1	100	82.836	Cricetulus_griseus_crigri
ENSODEG00000016214	USB1	98	47.253	ENSCSEG00000013881	usb1	99	47.253	Cynoglossus_semilaevis
ENSODEG00000016214	USB1	84	49.123	ENSCVAG00000009252	usb1	97	49.561	Cyprinodon_variegatus
ENSODEG00000016214	USB1	94	47.012	ENSDARG00000003841	usb1	99	45.487	Danio_rerio
ENSODEG00000016214	USB1	100	78.277	ENSDORG00000001888	Usb1	100	78.277	Dipodomys_ordii
ENSODEG00000016214	USB1	77	41.429	FBgn0037713	CG16790	97	38.889	Drosophila_melanogaster
ENSODEG00000016214	USB1	100	66.292	ENSETEG00000019682	USB1	100	66.292	Echinops_telfairi
ENSODEG00000016214	USB1	83	49.099	ENSEBUG00000005889	usb1	78	49.099	Eptatretus_burgeri
ENSODEG00000016214	USB1	100	82.397	ENSEASG00005005484	USB1	100	82.397	Equus_asinus_asinus
ENSODEG00000016214	USB1	99	83.083	ENSECAG00000019493	USB1	91	83.083	Equus_caballus
ENSODEG00000016214	USB1	66	78.409	ENSEEUG00000000154	USB1	100	58.491	Erinaceus_europaeus
ENSODEG00000016214	USB1	85	48.246	ENSELUG00000010974	usb1	99	45.055	Esox_lucius
ENSODEG00000016214	USB1	100	80.150	ENSFCAG00000002693	USB1	100	80.150	Felis_catus
ENSODEG00000016214	USB1	99	56.818	ENSFALG00000006876	USB1	99	58.271	Ficedula_albicollis
ENSODEG00000016214	USB1	100	87.640	ENSFDAG00000010052	USB1	100	87.640	Fukomys_damarensis
ENSODEG00000016214	USB1	88	46.000	ENSFHEG00000012334	usb1	96	48.560	Fundulus_heteroclitus
ENSODEG00000016214	USB1	83	50.000	ENSGMOG00000004228	usb1	99	50.000	Gadus_morhua
ENSODEG00000016214	USB1	83	67.411	ENSGALG00000035604	USB1	99	63.534	Gallus_gallus
ENSODEG00000016214	USB1	98	48.736	ENSGAFG00000021890	usb1	99	48.375	Gambusia_affinis
ENSODEG00000016214	USB1	84	52.444	ENSGACG00000003257	usb1	99	48.364	Gasterosteus_aculeatus
ENSODEG00000016214	USB1	100	63.504	ENSGAGG00000022572	USB1	100	63.504	Gopherus_agassizii
ENSODEG00000016214	USB1	100	81.648	ENSGGOG00000017147	USB1	100	81.648	Gorilla_gorilla
ENSODEG00000016214	USB1	90	53.333	ENSHBUG00000009823	usb1	99	49.640	Haplochromis_burtoni
ENSODEG00000016214	USB1	100	86.142	ENSHGLG00000016078	USB1	98	86.142	Heterocephalus_glaber_female
ENSODEG00000016214	USB1	100	86.142	ENSHGLG00100005562	USB1	98	86.142	Heterocephalus_glaber_male
ENSODEG00000016214	USB1	81	54.167	ENSHCOG00000015633	usb1	99	50.192	Hippocampus_comes
ENSODEG00000016214	USB1	98	46.875	ENSIPUG00000008601	usb1	99	46.528	Ictalurus_punctatus
ENSODEG00000016214	USB1	100	81.685	ENSSTOG00000007548	USB1	100	82.051	Ictidomys_tridecemlineatus
ENSODEG00000016214	USB1	100	83.835	ENSJJAG00000021859	Usb1	100	83.835	Jaculus_jaculus
ENSODEG00000016214	USB1	85	53.982	ENSKMAG00000007200	usb1	98	49.462	Kryptolebias_marmoratus
ENSODEG00000016214	USB1	74	53.500	ENSLBEG00000008452	usb1	82	47.154	Labrus_bergylta
ENSODEG00000016214	USB1	77	61.244	ENSLACG00000000105	USB1	92	54.717	Latimeria_chalumnae
ENSODEG00000016214	USB1	93	53.150	ENSLOCG00000000465	usb1	99	51.601	Lepisosteus_oculatus
ENSODEG00000016214	USB1	100	63.603	ENSLAFG00000002267	USB1	100	63.971	Loxodonta_africana
ENSODEG00000016214	USB1	100	81.648	ENSMFAG00000003926	USB1	100	82.397	Macaca_fascicularis
ENSODEG00000016214	USB1	100	81.648	ENSMMUG00000022669	USB1	100	82.397	Macaca_mulatta
ENSODEG00000016214	USB1	100	81.273	ENSMNEG00000042487	USB1	100	82.022	Macaca_nemestrina
ENSODEG00000016214	USB1	100	81.648	ENSMLEG00000028756	USB1	100	82.397	Mandrillus_leucophaeus
ENSODEG00000016214	USB1	98	50.181	ENSMAMG00000015092	usb1	99	50.181	Mastacembelus_armatus
ENSODEG00000016214	USB1	90	52.500	ENSMZEG00005010008	usb1	99	49.640	Maylandia_zebra
ENSODEG00000016214	USB1	100	80.899	ENSMAUG00000007832	Usb1	100	80.899	Mesocricetus_auratus
ENSODEG00000016214	USB1	100	81.648	ENSMICG00000004900	USB1	100	82.397	Microcebus_murinus
ENSODEG00000016214	USB1	100	78.652	ENSMOCG00000022647	Usb1	100	78.652	Microtus_ochrogaster
ENSODEG00000016214	USB1	85	51.316	ENSMMOG00000000490	usb1	99	48.855	Mola_mola
ENSODEG00000016214	USB1	100	63.838	ENSMODG00000014067	USB1	100	65.314	Monodelphis_domestica
ENSODEG00000016214	USB1	91	52.263	ENSMALG00000005930	usb1	99	48.582	Monopterus_albus
ENSODEG00000016214	USB1	100	79.401	MGP_CAROLIEiJ_G0031421	Usb1	100	79.646	Mus_caroli
ENSODEG00000016214	USB1	100	80.524	ENSMUSG00000031792	Usb1	100	80.531	Mus_musculus
ENSODEG00000016214	USB1	100	79.401	MGP_PahariEiJ_G0023019	Usb1	100	82.051	Mus_pahari
ENSODEG00000016214	USB1	100	79.026	MGP_SPRETEiJ_G0032540	Usb1	100	79.026	Mus_spretus
ENSODEG00000016214	USB1	100	78.439	ENSMPUG00000004684	USB1	96	78.810	Mustela_putorius_furo
ENSODEG00000016214	USB1	86	86.147	ENSMLUG00000007400	USB1	100	86.147	Myotis_lucifugus
ENSODEG00000016214	USB1	100	84.387	ENSNGAG00000009703	Usb1	100	84.387	Nannospalax_galili
ENSODEG00000016214	USB1	85	50.885	ENSNBRG00000008747	usb1	99	53.991	Neolamprologus_brichardi
ENSODEG00000016214	USB1	94	81.349	ENSNLEG00000003340	USB1	100	81.349	Nomascus_leucogenys
ENSODEG00000016214	USB1	56	56.579	ENSMEUG00000003328	-	100	57.692	Notamacropus_eugenii
ENSODEG00000016214	USB1	63	85.294	ENSOPRG00000011803	USB1	72	85.294	Ochotona_princeps
ENSODEG00000016214	USB1	98	49.458	ENSONIG00000011063	usb1	99	49.458	Oreochromis_niloticus
ENSODEG00000016214	USB1	84	70.222	ENSOANG00000012118	USB1	94	70.222	Ornithorhynchus_anatinus
ENSODEG00000016214	USB1	85	51.982	ENSORLG00000012479	usb1	99	47.970	Oryzias_latipes
ENSODEG00000016214	USB1	85	51.982	ENSORLG00020018671	usb1	99	48.339	Oryzias_latipes_hni
ENSODEG00000016214	USB1	85	51.982	ENSORLG00015009679	usb1	99	48.708	Oryzias_latipes_hsok
ENSODEG00000016214	USB1	85	51.101	ENSOMEG00000012930	usb1	99	47.122	Oryzias_melastigma
ENSODEG00000016214	USB1	100	76.030	ENSOGAG00000003273	USB1	100	76.030	Otolemur_garnettii
ENSODEG00000016214	USB1	91	81.070	ENSOARG00000001107	USB1	93	81.070	Ovis_aries
ENSODEG00000016214	USB1	100	81.648	ENSPPAG00000042137	USB1	100	81.648	Pan_paniscus
ENSODEG00000016214	USB1	100	80.150	ENSPPRG00000024797	USB1	100	80.150	Panthera_pardus
ENSODEG00000016214	USB1	100	79.775	ENSPTIG00000007506	USB1	100	79.775	Panthera_tigris_altaica
ENSODEG00000016214	USB1	100	75.281	ENSPTRG00000008172	USB1	100	85.981	Pan_troglodytes
ENSODEG00000016214	USB1	100	81.648	ENSPANG00000025138	USB1	100	82.397	Papio_anubis
ENSODEG00000016214	USB1	84	52.466	ENSPKIG00000015109	usb1	99	44.369	Paramormyrops_kingsleyae
ENSODEG00000016214	USB1	84	52.889	ENSPSIG00000004305	USB1	100	52.889	Pelodiscus_sinensis
ENSODEG00000016214	USB1	83	53.363	ENSPMGG00000017725	usb1	98	50.575	Periophthalmus_magnuspinnatus
ENSODEG00000016214	USB1	100	79.779	ENSPEMG00000016183	Usb1	100	79.779	Peromyscus_maniculatus_bairdii
ENSODEG00000016214	USB1	84	50.885	ENSPMAG00000000462	usb1	95	50.885	Petromyzon_marinus
ENSODEG00000016214	USB1	98	48.375	ENSPFOG00000011130	usb1	99	48.375	Poecilia_formosa
ENSODEG00000016214	USB1	98	48.375	ENSPLAG00000009820	usb1	99	48.375	Poecilia_latipinna
ENSODEG00000016214	USB1	98	48.375	ENSPMEG00000006402	usb1	99	48.375	Poecilia_mexicana
ENSODEG00000016214	USB1	85	49.794	ENSPREG00000001047	usb1	98	50.206	Poecilia_reticulata
ENSODEG00000016214	USB1	95	78.740	ENSPPYG00000007401	USB1	100	78.740	Pongo_abelii
ENSODEG00000016214	USB1	100	82.397	ENSPCOG00000022612	USB1	100	82.397	Propithecus_coquereli
ENSODEG00000016214	USB1	100	77.528	ENSPVAG00000004613	USB1	100	77.528	Pteropus_vampyrus
ENSODEG00000016214	USB1	90	53.333	ENSPNYG00000022262	usb1	99	49.640	Pundamilia_nyererei
ENSODEG00000016214	USB1	84	50.893	ENSPNAG00000011736	usb1	99	45.051	Pygocentrus_nattereri
ENSODEG00000016214	USB1	100	80.899	ENSRNOG00000013216	Usb1	100	80.899	Rattus_norvegicus
ENSODEG00000016214	USB1	100	75.655	ENSRBIG00000044466	USB1	100	86.916	Rhinopithecus_bieti
ENSODEG00000016214	USB1	100	81.648	ENSRROG00000029211	USB1	100	82.397	Rhinopithecus_roxellana
ENSODEG00000016214	USB1	100	80.524	ENSSBOG00000029362	USB1	100	80.524	Saimiri_boliviensis_boliviensis
ENSODEG00000016214	USB1	82	73.516	ENSSHAG00000006993	USB1	100	67.315	Sarcophilus_harrisii
ENSODEG00000016214	USB1	97	50.769	ENSSFOG00015023663	usb1	91	48.621	Scleropages_formosus
ENSODEG00000016214	USB1	97	49.270	ENSSMAG00000015834	usb1	99	50.000	Scophthalmus_maximus
ENSODEG00000016214	USB1	83	55.605	ENSSDUG00000002949	usb1	99	50.185	Seriola_dumerili
ENSODEG00000016214	USB1	84	55.556	ENSSLDG00000014174	usb1	99	49.640	Seriola_lalandi_dorsalis
ENSODEG00000016214	USB1	80	64.953	ENSSPUG00000006741	USB1	100	64.953	Sphenodon_punctatus
ENSODEG00000016214	USB1	98	48.227	ENSSPAG00000007484	usb1	99	48.227	Stegastes_partitus
ENSODEG00000016214	USB1	100	81.041	ENSSSCG00000002807	USB1	100	82.156	Sus_scrofa
ENSODEG00000016214	USB1	79	66.667	ENSTGUG00000004792	USB1	99	58.935	Taeniopygia_guttata
ENSODEG00000016214	USB1	98	49.071	ENSTRUG00000021069	usb1	99	49.071	Takifugu_rubripes
ENSODEG00000016214	USB1	98	45.420	ENSTNIG00000000626	usb1	98	45.420	Tetraodon_nigroviridis
ENSODEG00000016214	USB1	87	58.190	ENSTBEG00000001507	USB1	100	58.190	Tupaia_belangeri
ENSODEG00000016214	USB1	100	79.926	ENSUAMG00000016823	USB1	100	79.926	Ursus_americanus
ENSODEG00000016214	USB1	80	85.981	ENSUMAG00000021369	USB1	100	85.981	Ursus_maritimus
ENSODEG00000016214	USB1	99	79.851	ENSVVUG00000023700	USB1	89	85.281	Vulpes_vulpes
ENSODEG00000016214	USB1	81	57.339	ENSXETG00000013795	usb1	99	53.053	Xenopus_tropicalis
ENSODEG00000016214	USB1	85	53.070	ENSXMAG00000024687	usb1	79	49.587	Xiphophorus_maculatus