EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000016260 (Gene tree)
Gene ID: 101572801
Gene Symbol: RAVER1
Alias: -
Full Name: ribonucleoprotein%2C PTB binding 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 13657 bases
Position: chrJH651565.1:11808178-11821834
Accession: 101572801
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000022143	RRM_1	PF00076.22	1.3e-28	1	3
ENSODEP00000022143	RRM_1	PF00076.22	1.3e-28	2	3
ENSODEP00000022143	RRM_1	PF00076.22	1.3e-28	3	3
ENSODEP00000022142	RRM_1	PF00076.22	2.7e-28	1	2
ENSODEP00000022142	RRM_1	PF00076.22	2.7e-28	2	2
ENSODEP00000022141	RRM_1	PF00076.22	2.9e-28	1	2
ENSODEP00000022141	RRM_1	PF00076.22	2.9e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000022402	RAVER1-201	2344	XM_004632841	ENSODEP00000022141	737 (aa)	XP_004632898	-
ENSODET00000022403	RAVER1-202	2193	-	ENSODEP00000022142	730 (aa)	-	-
ENSODET00000022404	RAVER1-203	1812	-	ENSODEP00000022143	603 (aa)	-	-

Gene Model

Click here to download ENSODEG00000016260's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000016260's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000016260	RAVER1	59	56.011	ENSODEG00000005253	RAVER2	84	47.538

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000016260	RAVER1	100	90.310	ENSG00000161847	RAVER1	100	90.848	Homo_sapiens
ENSODEG00000016260	RAVER1	68	64.964	ENSAPOG00000017267	raver1	60	58.248	Acanthochromis_polyacanthus
ENSODEG00000016260	RAVER1	100	89.218	ENSAMEG00000011738	RAVER1	98	89.623	Ailuropoda_melanoleuca
ENSODEG00000016260	RAVER1	74	73.077	ENSAOCG00000005128	raver1	70	76.596	Amphiprion_ocellaris
ENSODEG00000016260	RAVER1	75	75.439	ENSAPEG00000010854	raver1	80	78.846	Amphiprion_percula
ENSODEG00000016260	RAVER1	98	50.337	ENSATEG00000021004	raver1	91	50.070	Anabas_testudineus
ENSODEG00000016260	RAVER1	86	86.207	ENSACAG00000008386	-	70	86.207	Anolis_carolinensis
ENSODEG00000016260	RAVER1	100	88.964	ENSANAG00000028226	RAVER1	98	90.040	Aotus_nancymaae
ENSODEG00000016260	RAVER1	68	85.417	ENSACLG00000018492	raver1	64	85.417	Astatotilapia_calliptera
ENSODEG00000016260	RAVER1	81	66.667	ENSAMXG00000005132	raver1	64	88.000	Astyanax_mexicanus
ENSODEG00000016260	RAVER1	100	93.750	ENSBTAG00000015721	RAVER1	97	93.750	Bos_taurus
ENSODEG00000016260	RAVER1	100	88.964	ENSCJAG00000005671	RAVER1	98	90.040	Callithrix_jacchus
ENSODEG00000016260	RAVER1	100	88.140	ENSCAFG00000017861	RAVER1	98	88.410	Canis_familiaris
ENSODEG00000016260	RAVER1	100	88.140	ENSCAFG00020024449	RAVER1	100	88.410	Canis_lupus_dingo
ENSODEG00000016260	RAVER1	100	88.962	ENSCHIG00000006718	RAVER1	100	88.633	Capra_hircus
ENSODEG00000016260	RAVER1	91	83.776	ENSTSYG00000027107	RAVER1	100	86.004	Carlito_syrichta
ENSODEG00000016260	RAVER1	99	82.730	ENSCAPG00000002269	RAVER1	100	90.419	Cavia_aperea
ENSODEG00000016260	RAVER1	100	91.914	ENSCPOG00000001008	RAVER1	100	93.127	Cavia_porcellus
ENSODEG00000016260	RAVER1	100	89.098	ENSCCAG00000031723	RAVER1	98	90.444	Cebus_capucinus
ENSODEG00000016260	RAVER1	100	90.444	ENSCATG00000043863	RAVER1	98	91.655	Cercocebus_atys
ENSODEG00000016260	RAVER1	100	96.612	ENSCLAG00000009336	RAVER1	100	96.612	Chinchilla_lanigera
ENSODEG00000016260	RAVER1	100	90.579	ENSCSAG00000007317	RAVER1	84	91.790	Chlorocebus_sabaeus
ENSODEG00000016260	RAVER1	93	71.082	ENSCPBG00000005349	-	67	90.625	Chrysemys_picta_bellii
ENSODEG00000016260	RAVER1	100	90.579	ENSCANG00000008337	RAVER1	98	91.790	Colobus_angolensis_palliatus
ENSODEG00000016260	RAVER1	100	89.906	ENSCGRG00001013260	-	100	90.310	Cricetulus_griseus_chok1gshd
ENSODEG00000016260	RAVER1	100	89.906	ENSCGRG00000015138	-	100	90.310	Cricetulus_griseus_crigri
ENSODEG00000016260	RAVER1	74	78.846	ENSCSEG00000021092	raver1	75	78.846	Cynoglossus_semilaevis
ENSODEG00000016260	RAVER1	77	75.439	ENSCVAG00000013971	raver1	66	57.551	Cyprinodon_variegatus
ENSODEG00000016260	RAVER1	74	60.398	ENSDARG00000052617	raver1	69	69.231	Danio_rerio
ENSODEG00000016260	RAVER1	100	65.786	ENSDNOG00000035742	-	74	83.041	Dasypus_novemcinctus
ENSODEG00000016260	RAVER1	100	81.818	ENSDORG00000010106	-	100	82.345	Dipodomys_ordii
ENSODEG00000016260	RAVER1	91	70.652	ENSETEG00000008201	-	87	89.848	Echinops_telfairi
ENSODEG00000016260	RAVER1	100	82.255	ENSEASG00005010544	-	88	94.293	Equus_asinus_asinus
ENSODEG00000016260	RAVER1	100	90.701	ENSECAG00000024966	RAVER1	98	91.779	Equus_caballus
ENSODEG00000016260	RAVER1	97	52.078	ENSELUG00000023287	raver1	91	52.684	Esox_lucius
ENSODEG00000016260	RAVER1	100	91.105	ENSFCAG00000009435	RAVER1	98	91.509	Felis_catus
ENSODEG00000016260	RAVER1	100	93.261	ENSFDAG00000015113	RAVER1	100	93.396	Fukomys_damarensis
ENSODEG00000016260	RAVER1	98	50.464	ENSGMOG00000003649	raver1	63	84.000	Gadus_morhua
ENSODEG00000016260	RAVER1	79	42.097	ENSGALG00000050608	-	62	40.234	Gallus_gallus
ENSODEG00000016260	RAVER1	100	49.542	ENSGAFG00000015944	raver1	60	78.846	Gambusia_affinis
ENSODEG00000016260	RAVER1	59	66.760	ENSGACG00000013818	raver1	96	50.000	Gasterosteus_aculeatus
ENSODEG00000016260	RAVER1	81	77.681	ENSGAGG00000011748	-	93	77.810	Gopherus_agassizii
ENSODEG00000016260	RAVER1	100	90.040	ENSGGOG00000006015	RAVER1	98	90.579	Gorilla_gorilla
ENSODEG00000016260	RAVER1	68	82.353	ENSHBUG00000021210	raver1	57	65.111	Haplochromis_burtoni
ENSODEG00000016260	RAVER1	100	92.453	ENSHGLG00000015460	RAVER1	100	91.914	Heterocephalus_glaber_female
ENSODEG00000016260	RAVER1	100	92.453	ENSHGLG00100000812	RAVER1	100	91.914	Heterocephalus_glaber_male
ENSODEG00000016260	RAVER1	68	63.990	ENSHCOG00000000449	raver1	60	82.000	Hippocampus_comes
ENSODEG00000016260	RAVER1	76	87.755	ENSIPUG00000013153	raver1	67	87.755	Ictalurus_punctatus
ENSODEG00000016260	RAVER1	100	90.188	ENSSTOG00000003241	RAVER1	100	90.860	Ictidomys_tridecemlineatus
ENSODEG00000016260	RAVER1	100	89.785	ENSJJAG00000018219	-	100	89.382	Jaculus_jaculus
ENSODEG00000016260	RAVER1	98	48.874	ENSKMAG00000017355	raver1	60	78.846	Kryptolebias_marmoratus
ENSODEG00000016260	RAVER1	68	65.610	ENSLBEG00000008268	raver1	68	59.298	Labrus_bergylta
ENSODEG00000016260	RAVER1	90	60.115	ENSLACG00000005809	-	99	59.654	Latimeria_chalumnae
ENSODEG00000016260	RAVER1	96	53.826	ENSLOCG00000007500	raver1	75	84.615	Lepisosteus_oculatus
ENSODEG00000016260	RAVER1	100	90.836	ENSLAFG00000003664	-	100	90.431	Loxodonta_africana
ENSODEG00000016260	RAVER1	100	90.040	ENSMFAG00000037977	RAVER1	98	91.252	Macaca_fascicularis
ENSODEG00000016260	RAVER1	100	90.310	ENSMMUG00000014897	RAVER1	98	91.521	Macaca_mulatta
ENSODEG00000016260	RAVER1	100	90.310	ENSMNEG00000028390	RAVER1	98	91.521	Macaca_nemestrina
ENSODEG00000016260	RAVER1	100	90.444	ENSMLEG00000041959	RAVER1	98	91.655	Mandrillus_leucophaeus
ENSODEG00000016260	RAVER1	77	77.193	ENSMAMG00000012059	raver1	78	77.358	Mastacembelus_armatus
ENSODEG00000016260	RAVER1	68	85.417	ENSMZEG00005019002	raver1	64	85.417	Maylandia_zebra
ENSODEG00000016260	RAVER1	100	89.396	ENSMAUG00000017948	-	100	89.262	Mesocricetus_auratus
ENSODEG00000016260	RAVER1	99	89.069	ENSMICG00000010326	RAVER1	99	89.069	Microcebus_murinus
ENSODEG00000016260	RAVER1	100	89.906	ENSMOCG00000015553	-	100	90.310	Microtus_ochrogaster
ENSODEG00000016260	RAVER1	99	49.596	ENSMMOG00000012093	raver1	74	85.417	Mola_mola
ENSODEG00000016260	RAVER1	97	74.793	ENSMODG00000005584	-	89	73.895	Monodelphis_domestica
ENSODEG00000016260	RAVER1	80	53.684	ENSMALG00000016569	raver1	62	82.000	Monopterus_albus
ENSODEG00000016260	RAVER1	100	87.984	MGP_CAROLIEiJ_G0031860	-	100	87.717	Mus_caroli
ENSODEG00000016260	RAVER1	100	88.117	ENSMUSG00000010205	Raver1	100	88.652	Mus_musculus
ENSODEG00000016260	RAVER1	100	86.853	MGP_PahariEiJ_G0014726	-	100	87.384	Mus_pahari
ENSODEG00000016260	RAVER1	100	87.984	MGP_SPRETEiJ_G0032984	-	100	88.518	Mus_spretus
ENSODEG00000016260	RAVER1	100	90.431	ENSMPUG00000006712	RAVER1	98	90.566	Mustela_putorius_furo
ENSODEG00000016260	RAVER1	100	88.140	ENSMLUG00000012328	RAVER1	100	88.410	Myotis_lucifugus
ENSODEG00000016260	RAVER1	100	88.829	ENSNGAG00000001260	-	100	89.233	Nannospalax_galili
ENSODEG00000016260	RAVER1	76	78.947	ENSNBRG00000010139	raver1	61	82.692	Neolamprologus_brichardi
ENSODEG00000016260	RAVER1	100	89.637	ENSNLEG00000012181	RAVER1	98	90.848	Nomascus_leucogenys
ENSODEG00000016260	RAVER1	90	74.370	ENSMEUG00000003281	-	86	87.037	Notamacropus_eugenii
ENSODEG00000016260	RAVER1	96	50.483	ENSONIG00000001559	raver1	71	71.364	Oreochromis_niloticus
ENSODEG00000016260	RAVER1	100	83.558	ENSOCUG00000020918	RAVER1	98	83.423	Oryctolagus_cuniculus
ENSODEG00000016260	RAVER1	98	47.297	ENSORLG00000005458	raver1	60	83.673	Oryzias_latipes
ENSODEG00000016260	RAVER1	68	65.526	ENSORLG00020004392	raver1	60	83.673	Oryzias_latipes_hni
ENSODEG00000016260	RAVER1	98	47.027	ENSORLG00015017222	raver1	60	83.673	Oryzias_latipes_hsok
ENSODEG00000016260	RAVER1	75	81.633	ENSOMEG00000023956	raver1	66	81.633	Oryzias_melastigma
ENSODEG00000016260	RAVER1	100	89.488	ENSOGAG00000011071	RAVER1	98	89.757	Otolemur_garnettii
ENSODEG00000016260	RAVER1	100	85.408	ENSOARG00000015886	RAVER1	98	86.927	Ovis_aries
ENSODEG00000016260	RAVER1	100	90.310	ENSPPAG00000002611	RAVER1	98	90.848	Pan_paniscus
ENSODEG00000016260	RAVER1	100	91.509	ENSPPRG00000009912	RAVER1	98	91.914	Panthera_pardus
ENSODEG00000016260	RAVER1	100	90.310	ENSPTRG00000010466	RAVER1	98	90.848	Pan_troglodytes
ENSODEG00000016260	RAVER1	100	90.310	ENSPANG00000004122	RAVER1	98	91.521	Papio_anubis
ENSODEG00000016260	RAVER1	100	90.457	ENSPEMG00000016411	-	100	91.263	Peromyscus_maniculatus_bairdii
ENSODEG00000016260	RAVER1	100	76.439	ENSPCIG00000018695	-	99	80.132	Phascolarctos_cinereus
ENSODEG00000016260	RAVER1	98	49.599	ENSPFOG00000007016	raver1	61	78.846	Poecilia_formosa
ENSODEG00000016260	RAVER1	55	80.000	ENSPLAG00000020793	raver1	54	80.000	Poecilia_latipinna
ENSODEG00000016260	RAVER1	96	51.166	ENSPMEG00000011220	raver1	62	80.000	Poecilia_mexicana
ENSODEG00000016260	RAVER1	72	88.372	ENSPREG00000006864	raver1	75	88.372	Poecilia_reticulata
ENSODEG00000016260	RAVER1	100	88.544	ENSPPYG00000010514	RAVER1	84	89.084	Pongo_abelii
ENSODEG00000016260	RAVER1	100	90.713	ENSPCOG00000026605	RAVER1	98	91.386	Propithecus_coquereli
ENSODEG00000016260	RAVER1	100	90.296	ENSPVAG00000003689	RAVER1	100	90.027	Pteropus_vampyrus
ENSODEG00000016260	RAVER1	68	82.353	ENSPNYG00000013284	raver1	65	82.353	Pundamilia_nyererei
ENSODEG00000016260	RAVER1	96	51.852	ENSPNAG00000015476	raver1	66	86.000	Pygocentrus_nattereri
ENSODEG00000016260	RAVER1	100	88.117	ENSRNOG00000020710	Raver1	100	88.385	Rattus_norvegicus
ENSODEG00000016260	RAVER1	100	90.579	ENSRBIG00000034702	RAVER1	98	91.521	Rhinopithecus_bieti
ENSODEG00000016260	RAVER1	100	88.560	ENSRROG00000031186	RAVER1	98	88.694	Rhinopithecus_roxellana
ENSODEG00000016260	RAVER1	100	86.945	ENSSBOG00000023423	RAVER1	98	87.483	Saimiri_boliviensis_boliviensis
ENSODEG00000016260	RAVER1	90	75.184	ENSSHAG00000008181	-	90	74.080	Sarcophilus_harrisii
ENSODEG00000016260	RAVER1	67	64.778	ENSSMAG00000004546	raver1	55	65.133	Scophthalmus_maximus
ENSODEG00000016260	RAVER1	98	47.678	ENSSDUG00000021063	raver1	80	82.000	Seriola_dumerili
ENSODEG00000016260	RAVER1	98	47.678	ENSSLDG00000014505	raver1	68	58.696	Seriola_lalandi_dorsalis
ENSODEG00000016260	RAVER1	65	67.089	ENSSPAG00000000688	raver1	60	78.846	Stegastes_partitus
ENSODEG00000016260	RAVER1	100	90.566	ENSSSCG00000013650	-	98	91.509	Sus_scrofa
ENSODEG00000016260	RAVER1	75	85.714	ENSTRUG00000025641	raver1	62	85.714	Takifugu_rubripes
ENSODEG00000016260	RAVER1	100	89.892	ENSTTRG00000009552	RAVER1	100	90.566	Tursiops_truncatus
ENSODEG00000016260	RAVER1	100	91.240	ENSUAMG00000020385	RAVER1	98	91.644	Ursus_americanus
ENSODEG00000016260	RAVER1	100	88.410	ENSVVUG00000028976	RAVER1	98	88.679	Vulpes_vulpes
ENSODEG00000016260	RAVER1	100	55.570	ENSXETG00000011622	raver1	100	54.267	Xenopus_tropicalis
ENSODEG00000016260	RAVER1	99	49.198	ENSXCOG00000016368	raver1	62	78.846	Xiphophorus_couchianus
ENSODEG00000016260	RAVER1	99	49.332	ENSXMAG00000000217	raver1	53	67.008	Xiphophorus_maculatus