EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000016460 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 31817 bases
Position: chrJH651565.1:12499306-12531122
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	1	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	2	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	3	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	4	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	5	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	6	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	7	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	8	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	9	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	10	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	11	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	12	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	13	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	14	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	15	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	16	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	17	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	18	19
ENSODEP00000022432	zf-C2H2	PF00096.26	2e-116	19	19
ENSODEP00000022432	zf-met	PF12874.7	2.1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000022693	-	2595	-	ENSODEP00000022432	864 (aa)	-	-

Gene Model

Click here to download ENSODEG00000016460's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000016460's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000016460	-	81	44.898	ENSODEG00000003685	SALL1	56	44.643
ENSODEG00000016460	-	99	51.171	ENSODEG00000009980	ZNF582	98	51.171
ENSODEG00000016460	-	88	48.131	ENSODEG00000008889	MYNN	50	47.511
ENSODEG00000016460	-	76	43.137	ENSODEG00000002692	SALL3	59	45.098
ENSODEG00000016460	-	85	50.542	ENSODEG00000014575	-	56	50.178
ENSODEG00000016460	-	74	38.938	ENSODEG00000014451	MAZ	94	36.232
ENSODEG00000016460	-	79	50.000	ENSODEG00000006410	-	100	50.000
ENSODEG00000016460	-	74	45.714	ENSODEG00000007856	SNAI1	55	45.714
ENSODEG00000016460	-	85	50.209	ENSODEG00000008851	-	73	50.209
ENSODEG00000016460	-	91	48.628	ENSODEG00000008278	-	88	50.515
ENSODEG00000016460	-	71	42.553	ENSODEG00000003589	PATZ1	56	34.946
ENSODEG00000016460	-	76	44.030	ENSODEG00000003654	-	52	44.030
ENSODEG00000016460	-	85	35.014	ENSODEG00000020561	ZNF319	95	34.916
ENSODEG00000016460	-	95	52.846	ENSODEG00000005837	ZNF2	95	52.846
ENSODEG00000016460	-	89	47.199	ENSODEG00000002735	ZFP62	94	47.199
ENSODEG00000016460	-	73	36.493	ENSODEG00000011185	ZNF784	77	36.493
ENSODEG00000016460	-	92	55.932	ENSODEG00000009193	ZNF112	76	55.932
ENSODEG00000016460	-	84	43.254	ENSODEG00000009133	PRDM5	78	43.254
ENSODEG00000016460	-	99	48.000	ENSODEG00000015543	-	99	48.000
ENSODEG00000016460	-	59	41.538	ENSODEG00000014837	-	99	41.538
ENSODEG00000016460	-	78	36.675	ENSODEG00000013318	ZNF574	94	32.321
ENSODEG00000016460	-	84	67.524	ENSODEG00000017047	-	90	67.524
ENSODEG00000016460	-	97	48.016	ENSODEG00000014404	ZFP1	99	48.016
ENSODEG00000016460	-	74	41.237	ENSODEG00000002057	ZNF423	98	34.884
ENSODEG00000016460	-	76	36.683	ENSODEG00000013022	ZBTB41	53	36.683
ENSODEG00000016460	-	98	47.436	ENSODEG00000009602	ZNF81	98	45.547
ENSODEG00000016460	-	78	55.034	ENSODEG00000000805	-	100	55.034
ENSODEG00000016460	-	74	38.462	ENSODEG00000006725	GTF3A	70	37.748
ENSODEG00000016460	-	78	44.505	ENSODEG00000005735	ZFP64	76	37.685

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000016460	-	93	89.560	ENSCAPG00000003129	-	95	89.560	Cavia_aperea
ENSODEG00000016460	-	90	94.605	ENSCPOG00000034004	-	99	94.605	Cavia_porcellus
ENSODEG00000016460	-	98	93.220	ENSCLAG00000012556	-	98	93.220	Chinchilla_lanigera
ENSODEG00000016460	-	99	82.424	ENSCGRG00001000576	Zfp26	86	82.424	Cricetulus_griseus_chok1gshd
ENSODEG00000016460	-	89	83.492	ENSCGRG00000000280	-	94	83.492	Cricetulus_griseus_crigri
ENSODEG00000016460	-	99	82.424	ENSCGRG00000010436	-	86	82.424	Cricetulus_griseus_crigri
ENSODEG00000016460	-	98	82.424	ENSDORG00000027564	Zfp26	92	82.424	Dipodomys_ordii
ENSODEG00000016460	-	94	93.465	ENSFDAG00000009594	-	95	93.465	Fukomys_damarensis
ENSODEG00000016460	-	98	91.018	ENSHGLG00000005362	-	88	91.018	Heterocephalus_glaber_female
ENSODEG00000016460	-	98	93.826	ENSHGLG00100007268	-	99	93.826	Heterocephalus_glaber_male
ENSODEG00000016460	-	99	83.656	ENSSTOG00000023536	-	99	83.656	Ictidomys_tridecemlineatus
ENSODEG00000016460	-	98	80.332	ENSJJAG00000020082	-	97	80.332	Jaculus_jaculus
ENSODEG00000016460	-	99	81.455	ENSMAUG00000017074	Zfp26	95	80.364	Mesocricetus_auratus
ENSODEG00000016460	-	99	81.818	ENSMOCG00000015724	Zfp26	98	81.818	Microtus_ochrogaster
ENSODEG00000016460	-	99	80.634	ENSMUSG00000063108	Zfp26	88	80.634	Mus_musculus
ENSODEG00000016460	-	99	82.061	ENSNGAG00000020695	Zfp26	89	82.061	Nannospalax_galili
ENSODEG00000016460	-	94	64.778	ENSOCUG00000029276	-	99	64.778	Oryctolagus_cuniculus
ENSODEG00000016460	-	99	80.824	ENSPEMG00000016507	Zfp26	88	80.824	Peromyscus_maniculatus_bairdii
ENSODEG00000016460	-	98	80.706	ENSRNOG00000025937	Zfp26	99	80.467	Rattus_norvegicus