EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000016578 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 1137 bases
Position: chrJH651520.1:23666379-23667515
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000022587	RRM_1	PF00076.22	2e-33	1	2
ENSODEP00000022587	RRM_1	PF00076.22	2e-33	2	2
ENSODEP00000022587	HnRNPA1	PF11627.8	1.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000022848	-	954	-	ENSODEP00000022587	317 (aa)	-	-

Gene Model

Click here to download ENSODEG00000016578's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000016578's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000016578	-	64	38.158	ENSODEG00000019976	-	58	34.066
ENSODEG00000016578	-	92	79.320	ENSODEG00000003691	-	57	97.487
ENSODEG00000016578	-	58	79.235	ENSODEG00000013694	-	60	77.041
ENSODEG00000016578	-	65	40.789	ENSODEG00000020479	-	59	39.130
ENSODEG00000016578	-	55	39.884	ENSODEG00000006830	HNRNPAB	69	37.811
ENSODEG00000016578	-	80	33.086	ENSODEG00000000376	-	73	34.615
ENSODEG00000016578	-	60	40.000	ENSODEG00000003135	-	61	40.000
ENSODEG00000016578	-	61	42.268	ENSODEG00000011974	MSI2	50	42.308
ENSODEG00000016578	-	57	60.000	ENSODEG00000019566	HNRNPA0	89	50.368
ENSODEG00000016578	-	60	94.304	ENSODEG00000008615	-	53	94.304
ENSODEG00000016578	-	74	88.085	ENSODEG00000010232	-	95	72.727
ENSODEG00000016578	-	84	51.307	ENSODEG00000005464	-	62	54.245
ENSODEG00000016578	-	50	45.349	ENSODEG00000012711	-	51	45.349
ENSODEG00000016578	-	58	80.874	ENSODEG00000000671	-	60	78.571
ENSODEG00000016578	-	65	36.842	ENSODEG00000019283	-	59	42.308
ENSODEG00000016578	-	58	86.339	ENSODEG00000020462	-	61	83.673
ENSODEG00000016578	-	63	77.114	ENSODEG00000003580	-	50	76.884
ENSODEG00000016578	-	63	98.000	ENSODEG00000003755	-	57	97.990
ENSODEG00000016578	-	64	43.137	ENSODEG00000001897	HNRNPD	58	44.509
ENSODEG00000016578	-	87	73.264	ENSODEG00000019577	-	61	82.653
ENSODEG00000016578	-	63	34.848	ENSODEG00000003178	-	54	32.955
ENSODEG00000016578	-	58	86.339	ENSODEG00000019306	-	61	83.673
ENSODEG00000016578	-	87	73.646	ENSODEG00000006941	-	83	71.923
ENSODEG00000016578	-	56	38.824	ENSODEG00000020231	-	50	38.824
ENSODEG00000016578	-	87	72.500	ENSODEG00000014833	-	63	82.653
ENSODEG00000016578	-	54	35.294	ENSODEG00000004187	-	53	35.294
ENSODEG00000016578	-	87	74.007	ENSODEG00000013137	-	83	72.692
ENSODEG00000016578	-	84	69.549	ENSODEG00000008757	-	87	66.023
ENSODEG00000016578	-	91	51.667	ENSODEG00000009329	-	56	56.906
ENSODEG00000016578	-	64	71.698	ENSODEG00000005746	-	67	71.698
ENSODEG00000016578	-	64	95.074	ENSODEG00000006322	-	59	95.477
ENSODEG00000016578	-	59	83.957	ENSODEG00000019007	-	61	82.653
ENSODEG00000016578	-	87	73.913	ENSODEG00000005110	-	84	74.615

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000016578	-	57	60.674	ENSG00000177733	HNRNPA0	59	60.221	Homo_sapiens
ENSODEG00000016578	-	60	80.000	ENSAPOG00000014678	-	54	81.421	Acanthochromis_polyacanthus
ENSODEG00000016578	-	62	80.808	ENSAPOG00000003688	hnrnpa3	51	81.421	Acanthochromis_polyacanthus
ENSODEG00000016578	-	65	54.237	ENSAPOG00000003364	HNRNPA0	58	53.933	Acanthochromis_polyacanthus
ENSODEG00000016578	-	81	66.797	ENSAPOG00000003641	hnrnpa3	87	69.397	Acanthochromis_polyacanthus
ENSODEG00000016578	-	65	62.570	ENSAPOG00000003387	HNRNPA0	74	62.570	Acanthochromis_polyacanthus
ENSODEG00000016578	-	60	58.549	ENSAMEG00000016316	HNRNPA0	59	60.221	Ailuropoda_melanoleuca
ENSODEG00000016578	-	93	80.435	ENSAMEG00000004293	-	93	80.952	Ailuropoda_melanoleuca
ENSODEG00000016578	-	65	61.453	ENSACIG00000021834	HNRNPA0	93	61.453	Amphilophus_citrinellus
ENSODEG00000016578	-	64	55.932	ENSATEG00000003526	-	94	55.932	Anabas_testudineus
ENSODEG00000016578	-	86	68.882	ENSACAG00000012234	-	84	70.405	Anolis_carolinensis
ENSODEG00000016578	-	73	93.043	ENSANAG00000037918	-	95	76.045	Aotus_nancymaae
ENSODEG00000016578	-	57	59.777	ENSANAG00000017086	HNRNPA0	58	59.777	Aotus_nancymaae
ENSODEG00000016578	-	56	54.190	ENSACLG00000008973	HNRNPA0	56	53.631	Astatotilapia_calliptera
ENSODEG00000016578	-	57	60.335	ENSBTAG00000016929	HNRNPA0	85	53.532	Bos_taurus
ENSODEG00000016578	-	57	59.777	ENSCJAG00000006112	HNRNPA0	88	48.718	Callithrix_jacchus
ENSODEG00000016578	-	57	60.335	ENSCHIG00000002602	HNRNPA0	62	59.358	Capra_hircus
ENSODEG00000016578	-	57	60.000	ENSCPOG00000026092	HNRNPA0	88	52.060	Cavia_porcellus
ENSODEG00000016578	-	57	59.777	ENSCCAG00000010302	HNRNPA0	87	51.311	Cebus_capucinus
ENSODEG00000016578	-	57	60.674	ENSCATG00000021167	HNRNPA0	59	60.221	Cercocebus_atys
ENSODEG00000016578	-	66	77.143	ENSCATG00000038569	-	94	68.085	Cercocebus_atys
ENSODEG00000016578	-	57	60.335	ENSCLAG00000015132	HNRNPA0	88	50.775	Chinchilla_lanigera
ENSODEG00000016578	-	57	60.674	ENSCSAG00000000499	HNRNPA0	88	51.292	Chlorocebus_sabaeus
ENSODEG00000016578	-	56	62.011	ENSCPBG00000008738	HNRNPA0	59	61.878	Chrysemys_picta_bellii
ENSODEG00000016578	-	57	60.674	ENSCANG00000038062	HNRNPA0	87	51.292	Colobus_angolensis_palliatus
ENSODEG00000016578	-	83	81.749	ENSCGRG00001010070	-	87	81.679	Cricetulus_griseus_chok1gshd
ENSODEG00000016578	-	58	75.497	ENSCGRG00001012459	-	93	55.762	Cricetulus_griseus_chok1gshd
ENSODEG00000016578	-	57	60.000	ENSCGRG00001005548	Hnrnpa0	60	59.669	Cricetulus_griseus_chok1gshd
ENSODEG00000016578	-	88	78.777	ENSCGRG00000007592	-	86	81.679	Cricetulus_griseus_crigri
ENSODEG00000016578	-	83	74.144	ENSCGRG00000003686	-	92	74.909	Cricetulus_griseus_crigri
ENSODEG00000016578	-	59	82.979	ENSDARG00000059351	hnrnpa3	82	82.741	Danio_rerio
ENSODEG00000016578	-	72	91.189	ENSDNOG00000031964	-	70	91.518	Dasypus_novemcinctus
ENSODEG00000016578	-	57	60.335	ENSDNOG00000030903	HNRNPA0	95	50.168	Dasypus_novemcinctus
ENSODEG00000016578	-	83	74.621	ENSETEG00000007747	-	91	76.426	Echinops_telfairi
ENSODEG00000016578	-	73	62.416	ENSEBUG00000007989	-	94	70.940	Eptatretus_burgeri
ENSODEG00000016578	-	61	70.833	ENSEBUG00000016570	HNRNPA0	94	55.077	Eptatretus_burgeri
ENSODEG00000016578	-	57	60.335	ENSECAG00000032164	HNRNPA0	88	52.632	Equus_caballus
ENSODEG00000016578	-	85	72.593	ENSELUG00000023080	hnrnpa3	91	65.108	Esox_lucius
ENSODEG00000016578	-	61	60.938	ENSFALG00000014395	HNRNPA0	88	52.013	Ficedula_albicollis
ENSODEG00000016578	-	83	76.806	ENSFDAG00000014067	-	79	77.099	Fukomys_damarensis
ENSODEG00000016578	-	85	61.755	ENSFDAG00000000331	-	82	63.987	Fukomys_damarensis
ENSODEG00000016578	-	60	60.000	ENSFDAG00000019780	HNRNPA0	85	48.450	Fukomys_damarensis
ENSODEG00000016578	-	68	71.889	ENSFDAG00000018739	-	87	66.532	Fukomys_damarensis
ENSODEG00000016578	-	93	68.136	ENSFDAG00000009547	-	85	67.667	Fukomys_damarensis
ENSODEG00000016578	-	63	60.377	ENSFHEG00000008384	HNRNPA0	80	60.377	Fundulus_heteroclitus
ENSODEG00000016578	-	64	53.371	ENSFHEG00000008390	HNRNPA0	53	53.073	Fundulus_heteroclitus
ENSODEG00000016578	-	93	49.458	ENSGMOG00000016232	HNRNPA0	69	58.333	Gadus_morhua
ENSODEG00000016578	-	61	61.538	ENSGALG00000006160	HNRNPA0	59	61.326	Gallus_gallus
ENSODEG00000016578	-	82	75.862	ENSGACG00000004477	hnrnpa3	87	74.330	Gasterosteus_aculeatus
ENSODEG00000016578	-	56	62.011	ENSGAGG00000005632	HNRNPA0	59	61.878	Gopherus_agassizii
ENSODEG00000016578	-	65	61.111	ENSHBUG00000023868	HNRNPA0	70	61.453	Haplochromis_burtoni
ENSODEG00000016578	-	57	60.000	ENSHGLG00000018216	HNRNPA0	61	59.669	Heterocephalus_glaber_female
ENSODEG00000016578	-	71	83.036	ENSHGLG00000014577	-	79	82.589	Heterocephalus_glaber_female
ENSODEG00000016578	-	71	92.411	ENSHGLG00100006677	-	95	78.006	Heterocephalus_glaber_male
ENSODEG00000016578	-	63	59.880	ENSHCOG00000007174	HNRNPA0	95	59.880	Hippocampus_comes
ENSODEG00000016578	-	60	82.199	ENSIPUG00000019815	RO32	55	83.607	Ictalurus_punctatus
ENSODEG00000016578	-	70	72.523	ENSSTOG00000019374	-	94	64.589	Ictidomys_tridecemlineatus
ENSODEG00000016578	-	82	53.257	ENSJJAG00000006954	Hnrnpa0	62	59.669	Jaculus_jaculus
ENSODEG00000016578	-	88	50.172	ENSLACG00000014480	HNRNPA0	59	58.427	Latimeria_chalumnae
ENSODEG00000016578	-	65	80.365	ENSLACG00000008189	hnrnpa3	51	88.587	Latimeria_chalumnae
ENSODEG00000016578	-	63	84.577	ENSLOCG00000006986	hnrnpa3	94	68.598	Lepisosteus_oculatus
ENSODEG00000016578	-	65	89.000	ENSLAFG00000027712	-	94	77.891	Loxodonta_africana
ENSODEG00000016578	-	57	60.674	ENSMFAG00000030522	HNRNPA0	87	51.292	Macaca_fascicularis
ENSODEG00000016578	-	57	60.674	ENSMNEG00000015863	HNRNPA0	87	51.292	Macaca_nemestrina
ENSODEG00000016578	-	94	70.356	ENSMNEG00000038943	-	96	69.565	Macaca_nemestrina
ENSODEG00000016578	-	57	60.674	ENSMLEG00000026629	HNRNPA0	59	60.221	Mandrillus_leucophaeus
ENSODEG00000016578	-	87	61.963	ENSMLEG00000033415	-	94	66.564	Mandrillus_leucophaeus
ENSODEG00000016578	-	65	62.570	ENSMAMG00000017754	HNRNPA0	82	62.570	Mastacembelus_armatus
ENSODEG00000016578	-	56	54.190	ENSMZEG00005001055	HNRNPA0	56	53.631	Maylandia_zebra
ENSODEG00000016578	-	57	60.335	ENSMAUG00000018485	Hnrnpa0	60	59.669	Mesocricetus_auratus
ENSODEG00000016578	-	56	60.335	ENSMODG00000014720	HNRNPA0	70	60.674	Monodelphis_domestica
ENSODEG00000016578	-	64	58.857	ENSMODG00000002463	-	93	58.857	Monodelphis_domestica
ENSODEG00000016578	-	93	69.922	ENSMALG00000009691	hnrnpa3	89	73.404	Monopterus_albus
ENSODEG00000016578	-	57	60.335	MGP_CAROLIEiJ_G0018593	Hnrnpa0	89	52.030	Mus_caroli
ENSODEG00000016578	-	57	60.335	ENSMUSG00000007836	Hnrnpa0	89	52.399	Mus_musculus
ENSODEG00000016578	-	57	60.335	MGP_PahariEiJ_G0019657	Hnrnpa0	68	59.669	Mus_pahari
ENSODEG00000016578	-	57	60.335	MGP_SPRETEiJ_G0019473	Hnrnpa0	65	59.669	Mus_spretus
ENSODEG00000016578	-	57	60.335	ENSMPUG00000019790	HNRNPA0	96	49.832	Mustela_putorius_furo
ENSODEG00000016578	-	57	60.335	ENSMLUG00000012683	-	59	60.221	Myotis_lucifugus
ENSODEG00000016578	-	91	74.740	ENSNGAG00000001008	-	84	75.497	Nannospalax_galili
ENSODEG00000016578	-	57	60.335	ENSNGAG00000008883	Hnrnpa0	89	54.023	Nannospalax_galili
ENSODEG00000016578	-	57	60.335	ENSMEUG00000013675	HNRNPA0	59	60.335	Notamacropus_eugenii
ENSODEG00000016578	-	57	52.747	ENSORLG00000025332	-	59	52.198	Oryzias_latipes
ENSODEG00000016578	-	57	52.747	ENSORLG00000025015	-	59	52.198	Oryzias_latipes
ENSODEG00000016578	-	57	51.648	ENSORLG00000027074	-	81	51.648	Oryzias_latipes
ENSODEG00000016578	-	85	42.662	ENSORLG00020007505	-	58	51.724	Oryzias_latipes_hni
ENSODEG00000016578	-	85	41.522	ENSORLG00020008203	-	58	51.445	Oryzias_latipes_hni
ENSODEG00000016578	-	86	41.638	ENSORLG00020022487	-	65	53.107	Oryzias_latipes_hni
ENSODEG00000016578	-	59	49.733	ENSORLG00020007109	-	58	50.549	Oryzias_latipes_hni
ENSODEG00000016578	-	65	51.630	ENSORLG00015016302	HNRNPA0	59	51.913	Oryzias_latipes_hsok
ENSODEG00000016578	-	57	50.279	ENSORLG00015016169	HNRNPA0	59	51.149	Oryzias_latipes_hsok
ENSODEG00000016578	-	86	43.434	ENSORLG00015017144	-	58	52.874	Oryzias_latipes_hsok
ENSODEG00000016578	-	57	51.648	ENSORLG00015016507	-	55	52.542	Oryzias_latipes_hsok
ENSODEG00000016578	-	87	40.206	ENSORLG00015016236	HNRNPA0	61	44.872	Oryzias_latipes_hsok
ENSODEG00000016578	-	85	42.908	ENSORLG00015016157	-	62	51.429	Oryzias_latipes_hsok
ENSODEG00000016578	-	85	43.793	ENSORLG00015015185	-	59	52.874	Oryzias_latipes_hsok
ENSODEG00000016578	-	57	52.198	ENSORLG00015015182	-	77	52.809	Oryzias_latipes_hsok
ENSODEG00000016578	-	56	60.335	ENSOGAG00000025754	HNRNPA0	79	59.043	Otolemur_garnettii
ENSODEG00000016578	-	57	60.335	ENSOARG00000015434	HNRNPA0	90	53.008	Ovis_aries
ENSODEG00000016578	-	57	60.674	ENSPPAG00000005303	HNRNPA0	86	51.292	Pan_paniscus
ENSODEG00000016578	-	57	60.335	ENSPPRG00000014655	HNRNPA0	88	51.292	Panthera_pardus
ENSODEG00000016578	-	57	60.674	ENSPTRG00000017273	HNRNPA0	86	51.292	Pan_troglodytes
ENSODEG00000016578	-	57	60.674	ENSPANG00000012900	HNRNPA0	59	60.221	Papio_anubis
ENSODEG00000016578	-	60	65.169	ENSPKIG00000020281	-	53	65.169	Paramormyrops_kingsleyae
ENSODEG00000016578	-	69	84.277	ENSPKIG00000022916	hnrnpa3	71	83.920	Paramormyrops_kingsleyae
ENSODEG00000016578	-	64	64.607	ENSPKIG00000020270	HNRNPA0	64	64.607	Paramormyrops_kingsleyae
ENSODEG00000016578	-	61	76.166	ENSPMGG00000000747	hnrnpa3	75	77.987	Periophthalmus_magnuspinnatus
ENSODEG00000016578	-	87	48.754	ENSPEMG00000020274	Hnrnpa0	81	59.669	Peromyscus_maniculatus_bairdii
ENSODEG00000016578	-	64	71.429	ENSPMAG00000004449	-	79	75.543	Petromyzon_marinus
ENSODEG00000016578	-	62	60.234	ENSPMEG00000017025	HNRNPA0	95	58.857	Poecilia_mexicana
ENSODEG00000016578	-	64	59.748	ENSPREG00000010619	HNRNPA0	76	59.375	Poecilia_reticulata
ENSODEG00000016578	-	71	77.232	ENSPREG00000005411	hnrnpa3	61	79.781	Poecilia_reticulata
ENSODEG00000016578	-	91	96.257	ENSPPYG00000012967	-	80	93.846	Pongo_abelii
ENSODEG00000016578	-	57	60.674	ENSPPYG00000015814	HNRNPA0	59	60.221	Pongo_abelii
ENSODEG00000016578	-	63	94.500	ENSPPYG00000001012	-	94	83.391	Pongo_abelii
ENSODEG00000016578	-	58	83.799	ENSPNYG00000008424	hnrnpa3	75	82.682	Pundamilia_nyererei
ENSODEG00000016578	-	65	60.112	ENSPNAG00000023333	HNRNPA0	61	60.112	Pygocentrus_nattereri
ENSODEG00000016578	-	57	60.335	ENSRNOG00000039876	LOC681410	65	59.669	Rattus_norvegicus
ENSODEG00000016578	-	57	60.674	ENSRBIG00000023673	HNRNPA0	59	60.221	Rhinopithecus_bieti
ENSODEG00000016578	-	84	67.550	ENSRROG00000034643	-	91	68.387	Rhinopithecus_roxellana
ENSODEG00000016578	-	57	60.674	ENSRROG00000002558	HNRNPA0	59	60.221	Rhinopithecus_roxellana
ENSODEG00000016578	-	85	63.107	ENSSFOG00015016280	hnrnpa1	92	64.331	Scleropages_formosus
ENSODEG00000016578	-	68	81.567	ENSSFOG00015001814	hnrnpa3	51	83.417	Scleropages_formosus
ENSODEG00000016578	-	64	65.909	ENSSFOG00015002650	HNRNPA0	56	65.730	Scleropages_formosus
ENSODEG00000016578	-	62	80.303	ENSSDUG00000000381	hnrnpa3	59	80.874	Seriola_dumerili
ENSODEG00000016578	-	56	61.453	ENSSPUG00000016613	HNRNPA0	96	51.014	Sphenodon_punctatus
ENSODEG00000016578	-	60	64.737	ENSSSCG00000033635	-	50	65.556	Sus_scrofa
ENSODEG00000016578	-	72	60.606	ENSSSCG00000040926	-	50	65.556	Sus_scrofa
ENSODEG00000016578	-	60	59.770	ENSTGUG00000001186	HNRNPA0	94	50.685	Taeniopygia_guttata
ENSODEG00000016578	-	60	51.136	ENSTRUG00000021494	-	59	50.847	Takifugu_rubripes
ENSODEG00000016578	-	64	77.451	ENSTNIG00000016958	hnrnpa3	95	80.102	Tetraodon_nigroviridis
ENSODEG00000016578	-	57	60.335	ENSTTRG00000000499	HNRNPA0	60	60.221	Tursiops_truncatus
ENSODEG00000016578	-	57	60.335	ENSVVUG00000014736	HNRNPA0	96	50.336	Vulpes_vulpes
ENSODEG00000016578	-	62	59.890	ENSXETG00000003833	hnrnpa0	56	59.659	Xenopus_tropicalis
ENSODEG00000016578	-	65	52.747	ENSXMAG00000029150	HNRNPA0	59	52.459	Xiphophorus_maculatus
ENSODEG00000016578	-	62	60.234	ENSXMAG00000019804	HNRNPA0	93	59.195	Xiphophorus_maculatus