EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000016709 (Gene tree)
Gene ID: 101573523
Gene Symbol: EXOSC1
Alias: CGI-108|CSL4|Csl4p|SKI4|Ski4p|hCsl4p|p13
Full Name: exosome component 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 6194 bases
Position: chrJH651525.1:5055208-5061401
Accession: 101573523
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000022774	EXOSC1	PF10447.9	5.1e-15	1	1
ENSODEP00000022775	ECR1_N	PF14382.6	3.8e-09	1	1
ENSODEP00000022774	ECR1_N	PF14382.6	5.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000023036	EXOSC1-202	465	XM_004625509	ENSODEP00000022775	154 (aa)	XP_004625566	UPI000333982D
ENSODET00000023035	EXOSC1-201	625	XM_004625508	ENSODEP00000022774	195 (aa)	XP_004625565	UPI000333CAEB

Gene Model

Click here to download ENSODEG00000016709's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000016709's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000016709	EXOSC1	100	96.923	ENSG00000171311	EXOSC1	100	96.923	Homo_sapiens
ENSODEG00000016709	EXOSC1	98	80.628	ENSAPOG00000007822	exosc1	98	80.628	Acanthochromis_polyacanthus
ENSODEG00000016709	EXOSC1	100	98.462	ENSAMEG00000000129	EXOSC1	100	98.462	Ailuropoda_melanoleuca
ENSODEG00000016709	EXOSC1	96	79.787	ENSACIG00000018956	exosc1	92	79.787	Amphilophus_citrinellus
ENSODEG00000016709	EXOSC1	98	80.628	ENSAOCG00000010699	exosc1	98	80.628	Amphiprion_ocellaris
ENSODEG00000016709	EXOSC1	92	70.950	ENSAPEG00000012690	exosc1	96	70.950	Amphiprion_percula
ENSODEG00000016709	EXOSC1	98	80.105	ENSATEG00000018683	exosc1	98	80.105	Anabas_testudineus
ENSODEG00000016709	EXOSC1	99	85.492	ENSACAG00000002101	EXOSC1	99	85.492	Anolis_carolinensis
ENSODEG00000016709	EXOSC1	100	98.462	ENSANAG00000034669	EXOSC1	100	98.462	Aotus_nancymaae
ENSODEG00000016709	EXOSC1	98	80.628	ENSACLG00000021243	exosc1	98	80.628	Astatotilapia_calliptera
ENSODEG00000016709	EXOSC1	98	82.723	ENSAMXG00000011116	exosc1	98	82.723	Astyanax_mexicanus
ENSODEG00000016709	EXOSC1	100	98.462	ENSBTAG00000012699	EXOSC1	100	98.462	Bos_taurus
ENSODEG00000016709	EXOSC1	92	32.979	WBGene00012966	exos-1	90	32.979	Caenorhabditis_elegans
ENSODEG00000016709	EXOSC1	100	98.052	ENSCJAG00000016586	EXOSC1	100	98.052	Callithrix_jacchus
ENSODEG00000016709	EXOSC1	100	97.949	ENSCAFG00000009068	EXOSC1	94	97.949	Canis_familiaris
ENSODEG00000016709	EXOSC1	100	97.949	ENSCAFG00020006002	EXOSC1	94	97.949	Canis_lupus_dingo
ENSODEG00000016709	EXOSC1	100	98.462	ENSCHIG00000015253	EXOSC1	100	98.462	Capra_hircus
ENSODEG00000016709	EXOSC1	100	97.436	ENSTSYG00000000760	EXOSC1	100	97.436	Carlito_syrichta
ENSODEG00000016709	EXOSC1	100	98.974	ENSCPOG00000001173	EXOSC1	100	98.974	Cavia_porcellus
ENSODEG00000016709	EXOSC1	100	59.006	ENSCCAG00000023986	EXOSC1	100	59.006	Cebus_capucinus
ENSODEG00000016709	EXOSC1	100	96.923	ENSCATG00000034114	EXOSC1	100	96.923	Cercocebus_atys
ENSODEG00000016709	EXOSC1	100	99.487	ENSCLAG00000002463	EXOSC1	100	99.487	Chinchilla_lanigera
ENSODEG00000016709	EXOSC1	100	96.410	ENSCSAG00000005870	EXOSC1	100	96.410	Chlorocebus_sabaeus
ENSODEG00000016709	EXOSC1	96	84.492	ENSCHOG00000006477	EXOSC1	100	84.492	Choloepus_hoffmanni
ENSODEG00000016709	EXOSC1	54	82.075	ENSCPBG00000011949	EXOSC1	88	82.075	Chrysemys_picta_bellii
ENSODEG00000016709	EXOSC1	95	55.615	ENSCING00000022734	-	89	55.615	Ciona_intestinalis
ENSODEG00000016709	EXOSC1	95	57.754	ENSCSAVG00000010865	-	95	57.754	Ciona_savignyi
ENSODEG00000016709	EXOSC1	100	96.923	ENSCANG00000034159	EXOSC1	100	96.923	Colobus_angolensis_palliatus
ENSODEG00000016709	EXOSC1	100	98.052	ENSCGRG00001000335	Exosc1	100	98.052	Cricetulus_griseus_chok1gshd
ENSODEG00000016709	EXOSC1	100	98.052	ENSCGRG00000011602	Exosc1	100	98.052	Cricetulus_griseus_crigri
ENSODEG00000016709	EXOSC1	98	68.063	ENSCSEG00000007895	exosc1	95	68.063	Cynoglossus_semilaevis
ENSODEG00000016709	EXOSC1	98	76.963	ENSCVAG00000016748	exosc1	98	76.963	Cyprinodon_variegatus
ENSODEG00000016709	EXOSC1	98	81.152	ENSDARG00000059841	exosc1	98	81.152	Danio_rerio
ENSODEG00000016709	EXOSC1	75	97.973	ENSDNOG00000007983	EXOSC1	100	97.973	Dasypus_novemcinctus
ENSODEG00000016709	EXOSC1	100	97.949	ENSDORG00000016528	Exosc1	100	97.949	Dipodomys_ordii
ENSODEG00000016709	EXOSC1	94	48.677	FBgn0032346	Csl4	92	48.677	Drosophila_melanogaster
ENSODEG00000016709	EXOSC1	100	96.410	ENSETEG00000002469	-	100	96.410	Echinops_telfairi
ENSODEG00000016709	EXOSC1	99	63.265	ENSEBUG00000008164	exosc1	98	63.265	Eptatretus_burgeri
ENSODEG00000016709	EXOSC1	100	88.718	ENSEASG00005008684	EXOSC1	100	88.718	Equus_asinus_asinus
ENSODEG00000016709	EXOSC1	61	78.992	ENSECAG00000010621	EXOSC1	71	78.992	Equus_caballus
ENSODEG00000016709	EXOSC1	100	97.436	ENSEEUG00000005647	EXOSC1	100	97.436	Erinaceus_europaeus
ENSODEG00000016709	EXOSC1	94	80.978	ENSELUG00000017369	exosc1	81	80.978	Esox_lucius
ENSODEG00000016709	EXOSC1	100	98.462	ENSFCAG00000040563	EXOSC1	94	98.462	Felis_catus
ENSODEG00000016709	EXOSC1	100	84.103	ENSFALG00000008450	EXOSC1	100	84.103	Ficedula_albicollis
ENSODEG00000016709	EXOSC1	100	99.487	ENSFDAG00000000846	EXOSC1	100	99.487	Fukomys_damarensis
ENSODEG00000016709	EXOSC1	98	76.963	ENSFHEG00000009154	exosc1	98	76.963	Fundulus_heteroclitus
ENSODEG00000016709	EXOSC1	98	80.628	ENSGMOG00000008993	exosc1	98	80.628	Gadus_morhua
ENSODEG00000016709	EXOSC1	100	73.333	ENSGALG00000039917	EXOSC1	100	86.986	Gallus_gallus
ENSODEG00000016709	EXOSC1	98	76.963	ENSGAFG00000010265	exosc1	94	76.963	Gambusia_affinis
ENSODEG00000016709	EXOSC1	98	80.628	ENSGACG00000018936	exosc1	98	80.628	Gasterosteus_aculeatus
ENSODEG00000016709	EXOSC1	100	85.641	ENSGAGG00000019192	EXOSC1	100	85.641	Gopherus_agassizii
ENSODEG00000016709	EXOSC1	100	84.615	ENSGGOG00000003099	EXOSC1	100	84.615	Gorilla_gorilla
ENSODEG00000016709	EXOSC1	98	80.628	ENSHBUG00000017857	exosc1	98	80.628	Haplochromis_burtoni
ENSODEG00000016709	EXOSC1	100	99.351	ENSHGLG00000016927	EXOSC1	100	99.351	Heterocephalus_glaber_female
ENSODEG00000016709	EXOSC1	100	99.351	ENSHGLG00100012208	EXOSC1	100	99.351	Heterocephalus_glaber_male
ENSODEG00000016709	EXOSC1	98	79.581	ENSHCOG00000019882	exosc1	98	79.581	Hippocampus_comes
ENSODEG00000016709	EXOSC1	98	81.675	ENSIPUG00000007685	exosc1	98	81.675	Ictalurus_punctatus
ENSODEG00000016709	EXOSC1	100	98.462	ENSSTOG00000006615	EXOSC1	100	98.462	Ictidomys_tridecemlineatus
ENSODEG00000016709	EXOSC1	63	82.787	ENSSTOG00000029860	-	93	82.787	Ictidomys_tridecemlineatus
ENSODEG00000016709	EXOSC1	100	97.949	ENSJJAG00000013311	Exosc1	100	97.949	Jaculus_jaculus
ENSODEG00000016709	EXOSC1	98	78.646	ENSKMAG00000001202	exosc1	81	78.646	Kryptolebias_marmoratus
ENSODEG00000016709	EXOSC1	98	80.105	ENSLBEG00000011448	exosc1	98	80.105	Labrus_bergylta
ENSODEG00000016709	EXOSC1	98	75.159	ENSLOCG00000003776	exosc1	99	75.159	Lepisosteus_oculatus
ENSODEG00000016709	EXOSC1	100	98.462	ENSLAFG00000015983	EXOSC1	100	98.462	Loxodonta_africana
ENSODEG00000016709	EXOSC1	100	96.923	ENSMFAG00000001493	EXOSC1	100	96.923	Macaca_fascicularis
ENSODEG00000016709	EXOSC1	100	96.923	ENSMMUG00000020028	EXOSC1	100	96.753	Macaca_mulatta
ENSODEG00000016709	EXOSC1	100	96.923	ENSMNEG00000029816	EXOSC1	100	96.923	Macaca_nemestrina
ENSODEG00000016709	EXOSC1	100	96.753	ENSMLEG00000027643	EXOSC1	100	96.753	Mandrillus_leucophaeus
ENSODEG00000016709	EXOSC1	98	81.152	ENSMAMG00000012200	exosc1	98	81.152	Mastacembelus_armatus
ENSODEG00000016709	EXOSC1	98	80.628	ENSMZEG00005007042	exosc1	98	80.628	Maylandia_zebra
ENSODEG00000016709	EXOSC1	100	85.128	ENSMAUG00000020462	-	100	85.128	Mesocricetus_auratus
ENSODEG00000016709	EXOSC1	100	97.949	ENSMICG00000007664	EXOSC1	100	97.403	Microcebus_murinus
ENSODEG00000016709	EXOSC1	97	91.579	ENSMOCG00000017124	-	97	91.579	Microtus_ochrogaster
ENSODEG00000016709	EXOSC1	100	98.052	ENSMOCG00000006004	-	100	98.052	Microtus_ochrogaster
ENSODEG00000016709	EXOSC1	99	75.817	ENSMMOG00000021403	exosc1	99	75.817	Mola_mola
ENSODEG00000016709	EXOSC1	100	93.367	ENSMODG00000004213	EXOSC1	100	93.367	Monodelphis_domestica
ENSODEG00000016709	EXOSC1	94	80.978	ENSMALG00000007061	exosc1	92	80.978	Monopterus_albus
ENSODEG00000016709	EXOSC1	100	97.403	MGP_CAROLIEiJ_G0022959	Exosc1	100	97.403	Mus_caroli
ENSODEG00000016709	EXOSC1	100	96.753	ENSMUSG00000034321	Exosc1	100	96.753	Mus_musculus
ENSODEG00000016709	EXOSC1	100	98.052	MGP_PahariEiJ_G0014449	Exosc1	100	98.052	Mus_pahari
ENSODEG00000016709	EXOSC1	100	97.403	MGP_SPRETEiJ_G0023880	Exosc1	100	97.403	Mus_spretus
ENSODEG00000016709	EXOSC1	100	98.462	ENSMPUG00000017044	EXOSC1	100	98.462	Mustela_putorius_furo
ENSODEG00000016709	EXOSC1	100	97.949	ENSMLUG00000009228	EXOSC1	100	97.949	Myotis_lucifugus
ENSODEG00000016709	EXOSC1	100	96.410	ENSNGAG00000022033	Exosc1	100	96.410	Nannospalax_galili
ENSODEG00000016709	EXOSC1	97	78.000	ENSNBRG00000024007	exosc1	97	78.000	Neolamprologus_brichardi
ENSODEG00000016709	EXOSC1	100	96.753	ENSNLEG00000013872	EXOSC1	100	96.753	Nomascus_leucogenys
ENSODEG00000016709	EXOSC1	59	92.174	ENSMEUG00000002246	EXOSC1	100	92.174	Notamacropus_eugenii
ENSODEG00000016709	EXOSC1	100	96.923	ENSOPRG00000005065	EXOSC1	100	96.923	Ochotona_princeps
ENSODEG00000016709	EXOSC1	98	80.628	ENSONIG00000017683	exosc1	98	80.628	Oreochromis_niloticus
ENSODEG00000016709	EXOSC1	59	93.913	ENSOANG00000006563	EXOSC1	98	91.935	Ornithorhynchus_anatinus
ENSODEG00000016709	EXOSC1	100	92.308	ENSOCUG00000026461	-	100	92.308	Oryctolagus_cuniculus
ENSODEG00000016709	EXOSC1	100	97.449	ENSOCUG00000011898	-	100	97.449	Oryctolagus_cuniculus
ENSODEG00000016709	EXOSC1	98	79.167	ENSORLG00000011595	exosc1	98	79.167	Oryzias_latipes
ENSODEG00000016709	EXOSC1	98	79.167	ENSORLG00020005831	exosc1	98	79.167	Oryzias_latipes_hni
ENSODEG00000016709	EXOSC1	98	79.167	ENSORLG00015004317	exosc1	98	79.167	Oryzias_latipes_hsok
ENSODEG00000016709	EXOSC1	97	65.318	ENSOMEG00000013907	exosc1	98	65.318	Oryzias_melastigma
ENSODEG00000016709	EXOSC1	100	97.949	ENSOGAG00000016259	EXOSC1	100	97.949	Otolemur_garnettii
ENSODEG00000016709	EXOSC1	100	97.949	ENSOARG00000010136	EXOSC1	100	97.949	Ovis_aries
ENSODEG00000016709	EXOSC1	100	96.753	ENSPPAG00000039842	EXOSC1	100	96.753	Pan_paniscus
ENSODEG00000016709	EXOSC1	100	98.462	ENSPPRG00000023366	EXOSC1	100	98.462	Panthera_pardus
ENSODEG00000016709	EXOSC1	100	98.462	ENSPTIG00000017701	EXOSC1	100	98.462	Panthera_tigris_altaica
ENSODEG00000016709	EXOSC1	100	96.923	ENSPTRG00000002808	EXOSC1	100	96.923	Pan_troglodytes
ENSODEG00000016709	EXOSC1	100	96.923	ENSPANG00000021324	EXOSC1	100	96.923	Papio_anubis
ENSODEG00000016709	EXOSC1	98	81.675	ENSPKIG00000016037	exosc1	98	81.675	Paramormyrops_kingsleyae
ENSODEG00000016709	EXOSC1	75	82.192	ENSPSIG00000013571	EXOSC1	98	81.148	Pelodiscus_sinensis
ENSODEG00000016709	EXOSC1	98	69.110	ENSPMGG00000014002	exosc1	98	69.110	Periophthalmus_magnuspinnatus
ENSODEG00000016709	EXOSC1	100	98.052	ENSPEMG00000010710	-	100	98.052	Peromyscus_maniculatus_bairdii
ENSODEG00000016709	EXOSC1	95	71.658	ENSPMAG00000000195	exosc1	95	71.658	Petromyzon_marinus
ENSODEG00000016709	EXOSC1	100	94.359	ENSPCIG00000002210	EXOSC1	99	94.359	Phascolarctos_cinereus
ENSODEG00000016709	EXOSC1	98	76.440	ENSPFOG00000006755	exosc1	94	76.440	Poecilia_formosa
ENSODEG00000016709	EXOSC1	98	76.440	ENSPLAG00000005880	exosc1	98	76.440	Poecilia_latipinna
ENSODEG00000016709	EXOSC1	98	76.440	ENSPMEG00000015598	exosc1	94	76.440	Poecilia_mexicana
ENSODEG00000016709	EXOSC1	98	66.667	ENSPREG00000000405	exosc1	93	66.667	Poecilia_reticulata
ENSODEG00000016709	EXOSC1	100	96.410	ENSPPYG00000002531	EXOSC1	100	96.410	Pongo_abelii
ENSODEG00000016709	EXOSC1	100	97.436	ENSPCAG00000009135	EXOSC1	100	97.436	Procavia_capensis
ENSODEG00000016709	EXOSC1	100	91.795	ENSPCOG00000027539	EXOSC1	100	91.795	Propithecus_coquereli
ENSODEG00000016709	EXOSC1	100	98.462	ENSPVAG00000003372	EXOSC1	100	98.462	Pteropus_vampyrus
ENSODEG00000016709	EXOSC1	98	80.628	ENSPNYG00000021745	exosc1	98	80.628	Pundamilia_nyererei
ENSODEG00000016709	EXOSC1	98	81.675	ENSPNAG00000001944	exosc1	98	81.675	Pygocentrus_nattereri
ENSODEG00000016709	EXOSC1	100	98.052	ENSRNOG00000048708	Exosc1	100	98.052	Rattus_norvegicus
ENSODEG00000016709	EXOSC1	100	96.923	ENSRBIG00000035618	EXOSC1	100	96.923	Rhinopithecus_bieti
ENSODEG00000016709	EXOSC1	100	96.923	ENSRROG00000032589	EXOSC1	100	96.753	Rhinopithecus_roxellana
ENSODEG00000016709	EXOSC1	100	98.462	ENSSBOG00000000359	EXOSC1	100	98.462	Saimiri_boliviensis_boliviensis
ENSODEG00000016709	EXOSC1	75	96.599	ENSSHAG00000018219	EXOSC1	100	96.599	Sarcophilus_harrisii
ENSODEG00000016709	EXOSC1	98	83.246	ENSSFOG00015009069	exosc1	98	83.246	Scleropages_formosus
ENSODEG00000016709	EXOSC1	97	78.421	ENSSFOG00015016289	-	98	78.421	Scleropages_formosus
ENSODEG00000016709	EXOSC1	98	81.152	ENSSMAG00000003721	exosc1	98	81.152	Scophthalmus_maximus
ENSODEG00000016709	EXOSC1	98	81.152	ENSSDUG00000002993	exosc1	98	81.152	Seriola_dumerili
ENSODEG00000016709	EXOSC1	98	81.152	ENSSLDG00000025181	exosc1	98	81.152	Seriola_lalandi_dorsalis
ENSODEG00000016709	EXOSC1	100	83.590	ENSSARG00000000162	EXOSC1	100	83.590	Sorex_araneus
ENSODEG00000016709	EXOSC1	99	84.021	ENSSPUG00000012263	EXOSC1	99	84.021	Sphenodon_punctatus
ENSODEG00000016709	EXOSC1	98	72.251	ENSSPAG00000016792	exosc1	82	72.251	Stegastes_partitus
ENSODEG00000016709	EXOSC1	100	97.436	ENSSSCG00000010518	EXOSC1	91	97.436	Sus_scrofa
ENSODEG00000016709	EXOSC1	98	82.292	ENSTGUG00000009692	EXOSC1	99	82.292	Taeniopygia_guttata
ENSODEG00000016709	EXOSC1	97	73.545	ENSTRUG00000007706	exosc1	98	73.545	Takifugu_rubripes
ENSODEG00000016709	EXOSC1	97	73.438	ENSTNIG00000014079	exosc1	97	73.438	Tetraodon_nigroviridis
ENSODEG00000016709	EXOSC1	100	89.231	ENSTBEG00000006011	EXOSC1	100	89.231	Tupaia_belangeri
ENSODEG00000016709	EXOSC1	94	98.370	ENSTTRG00000009887	EXOSC1	100	98.370	Tursiops_truncatus
ENSODEG00000016709	EXOSC1	100	84.916	ENSUAMG00000010266	EXOSC1	100	84.916	Ursus_americanus
ENSODEG00000016709	EXOSC1	100	84.916	ENSUMAG00000022002	EXOSC1	100	84.916	Ursus_maritimus
ENSODEG00000016709	EXOSC1	100	97.949	ENSVVUG00000023192	EXOSC1	63	97.949	Vulpes_vulpes
ENSODEG00000016709	EXOSC1	98	79.167	ENSXETG00000003434	exosc1	99	79.167	Xenopus_tropicalis
ENSODEG00000016709	EXOSC1	62	85.000	ENSXCOG00000014499	exosc1	92	85.000	Xiphophorus_couchianus
ENSODEG00000016709	EXOSC1	98	67.188	ENSXMAG00000023382	exosc1	93	67.188	Xiphophorus_maculatus