EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000016828 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: signal recognition particle 19 kDa protein pseudogene
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 435 bases
Position: chrJH651520.1:26261440-26261874
Accession: 101591426
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000022928	SRP19	PF01922.17	8.9e-15	1	2
ENSODEP00000022928	SRP19	PF01922.17	8.9e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000023196	-	363	XM_004624173	ENSODEP00000022928	120 (aa)	XP_004624231	UPI0003339D4C

Gene Model

Click here to download ENSODEG00000016828's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000016828's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000016828	-	82	90.816	ENSODEG00000000221	-	89	90.816
ENSODEG00000016828	-	89	62.595	ENSODEG00000013862	-	94	63.704
ENSODEG00000016828	-	63	92.000	ENSODEG00000005538	-	66	92.000
ENSODEG00000016828	-	89	77.099	ENSODEG00000019119	-	94	77.037
ENSODEG00000016828	-	100	98.333	ENSODEG00000005033	-	100	98.333
ENSODEG00000016828	-	100	98.333	ENSODEG00000003165	-	100	98.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000016828	-	67	86.250	ENSCAFG00020008822	-	62	90.411	Canis_lupus_dingo
ENSODEG00000016828	-	93	94.595	ENSCATG00000030502	-	93	94.595	Cercocebus_atys
ENSODEG00000016828	-	100	97.500	ENSCLAG00000008943	-	100	97.500	Chinchilla_lanigera
ENSODEG00000016828	-	93	94.595	ENSCANG00000041172	-	93	94.595	Colobus_angolensis_palliatus
ENSODEG00000016828	-	61	87.671	ENSCGRG00001012009	-	66	87.671	Cricetulus_griseus_chok1gshd
ENSODEG00000016828	-	60	91.667	ENSEEUG00000009240	-	89	91.667	Erinaceus_europaeus
ENSODEG00000016828	-	93	68.966	ENSGGOG00000038737	-	93	68.966	Gorilla_gorilla
ENSODEG00000016828	-	93	94.595	ENSGGOG00000027482	SRP19	93	94.595	Gorilla_gorilla
ENSODEG00000016828	-	89	76.000	ENSHGLG00000006069	-	82	76.744	Heterocephalus_glaber_female
ENSODEG00000016828	-	89	76.800	ENSHGLG00100006563	-	82	77.519	Heterocephalus_glaber_male
ENSODEG00000016828	-	93	94.595	ENSMFAG00000040995	-	93	94.595	Macaca_fascicularis
ENSODEG00000016828	-	93	94.595	ENSMMUG00000000331	-	93	94.595	Macaca_mulatta
ENSODEG00000016828	-	93	94.595	ENSMLEG00000030461	-	93	94.595	Mandrillus_leucophaeus
ENSODEG00000016828	-	93	64.567	ENSMOCG00000010964	-	94	64.567	Microtus_ochrogaster
ENSODEG00000016828	-	93	95.495	ENSNLEG00000030884	-	93	95.495	Nomascus_leucogenys
ENSODEG00000016828	-	93	66.379	ENSPPAG00000040638	-	93	66.379	Pan_paniscus
ENSODEG00000016828	-	95	67.521	ENSPTRG00000045571	-	95	67.521	Pan_troglodytes
ENSODEG00000016828	-	93	63.063	ENSPCOG00000019414	-	91	63.063	Propithecus_coquereli
ENSODEG00000016828	-	93	94.595	ENSRROG00000033974	-	93	94.595	Rhinopithecus_roxellana
ENSODEG00000016828	-	56	91.045	ENSSHAG00000009452	-	88	89.855	Sarcophilus_harrisii
ENSODEG00000016828	-	59	71.831	ENSSPAG00000005240	-	57	71.831	Stegastes_partitus