EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000016856 (Gene tree)
Gene ID: 101589123
Gene Symbol: SRRT
Alias: -
Full Name: serrate%2C RNA effector molecule
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 12254 bases
Position: chrJH651550.1:15778689-15790942
Accession: 101589123
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000022970	ARS2	PF04959.13	2.4e-91	1	1
ENSODEP00000022971	ARS2	PF04959.13	5.7e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000023238	SRRT-201	2595	XM_004630483	ENSODEP00000022970	864 (aa)	XP_004630542	-
ENSODET00000023239	SRRT-202	1521	-	ENSODEP00000022971	506 (aa)	-	-

Gene Model

Click here to download ENSODEG00000016856's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000016856's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000016856	SRRT	100	97.706	ENSG00000087087	SRRT	99	100.000	Homo_sapiens
ENSODEG00000016856	SRRT	89	72.944	ENSAPOG00000002304	srrt	51	76.923	Acanthochromis_polyacanthus
ENSODEG00000016856	SRRT	100	94.961	ENSAMEG00000014506	SRRT	100	94.961	Ailuropoda_melanoleuca
ENSODEG00000016856	SRRT	89	72.727	ENSACIG00000015795	srrt	56	76.703	Amphilophus_citrinellus
ENSODEG00000016856	SRRT	93	59.138	ENSAOCG00000009189	-	96	57.814	Amphiprion_ocellaris
ENSODEG00000016856	SRRT	89	73.160	ENSAOCG00000009693	srrt	56	77.143	Amphiprion_ocellaris
ENSODEG00000016856	SRRT	89	72.727	ENSAPEG00000003646	srrt	58	72.464	Amphiprion_percula
ENSODEG00000016856	SRRT	93	59.138	ENSAPEG00000020016	-	96	57.814	Amphiprion_percula
ENSODEG00000016856	SRRT	94	57.863	ENSATEG00000003652	-	85	65.032	Anabas_testudineus
ENSODEG00000016856	SRRT	86	74.505	ENSATEG00000014425	srrt	85	75.604	Anabas_testudineus
ENSODEG00000016856	SRRT	95	77.671	ENSACAG00000001014	SRRT	96	76.969	Anolis_carolinensis
ENSODEG00000016856	SRRT	100	96.575	ENSANAG00000031718	SRRT	100	96.575	Aotus_nancymaae
ENSODEG00000016856	SRRT	89	71.429	ENSACLG00000013156	srrt	50	75.385	Astatotilapia_calliptera
ENSODEG00000016856	SRRT	93	57.841	ENSACLG00000009423	-	52	64.579	Astatotilapia_calliptera
ENSODEG00000016856	SRRT	88	72.210	ENSAMXG00000016671	srrt	50	76.889	Astyanax_mexicanus
ENSODEG00000016856	SRRT	100	95.434	ENSBTAG00000001134	SRRT	100	95.434	Bos_taurus
ENSODEG00000016856	SRRT	77	42.453	WBGene00017085	E01A2.2	85	42.857	Caenorhabditis_elegans
ENSODEG00000016856	SRRT	100	96.233	ENSCJAG00000014917	SRRT	100	96.233	Callithrix_jacchus
ENSODEG00000016856	SRRT	100	96.804	ENSCAFG00000023538	SRRT	100	96.804	Canis_familiaris
ENSODEG00000016856	SRRT	100	97.362	ENSCAFG00020013358	SRRT	100	97.362	Canis_lupus_dingo
ENSODEG00000016856	SRRT	100	95.776	ENSCHIG00000010495	SRRT	100	95.776	Capra_hircus
ENSODEG00000016856	SRRT	100	94.757	ENSTSYG00000036426	SRRT	99	93.750	Carlito_syrichta
ENSODEG00000016856	SRRT	95	98.663	ENSCAPG00000013586	SRRT	100	98.663	Cavia_aperea
ENSODEG00000016856	SRRT	100	97.605	ENSCPOG00000001739	SRRT	100	97.605	Cavia_porcellus
ENSODEG00000016856	SRRT	100	96.689	ENSCCAG00000015877	SRRT	100	96.689	Cebus_capucinus
ENSODEG00000016856	SRRT	100	97.133	ENSCATG00000036306	SRRT	100	97.133	Cercocebus_atys
ENSODEG00000016856	SRRT	100	97.831	ENSCLAG00000007568	SRRT	100	97.831	Chinchilla_lanigera
ENSODEG00000016856	SRRT	100	96.804	ENSCSAG00000017996	SRRT	100	96.804	Chlorocebus_sabaeus
ENSODEG00000016856	SRRT	56	94.083	ENSCHOG00000007815	SRRT	67	94.083	Choloepus_hoffmanni
ENSODEG00000016856	SRRT	74	81.992	ENSCPBG00000011553	SRRT	83	81.955	Chrysemys_picta_bellii
ENSODEG00000016856	SRRT	100	42.358	ENSCING00000003506	-	54	51.674	Ciona_intestinalis
ENSODEG00000016856	SRRT	99	45.349	ENSCSAVG00000008394	-	81	54.039	Ciona_savignyi
ENSODEG00000016856	SRRT	100	97.362	ENSCANG00000034556	SRRT	100	97.362	Colobus_angolensis_palliatus
ENSODEG00000016856	SRRT	100	95.667	ENSCGRG00001001594	Srrt	100	95.667	Cricetulus_griseus_chok1gshd
ENSODEG00000016856	SRRT	100	95.146	ENSCGRG00000007292	Srrt	100	95.146	Cricetulus_griseus_crigri
ENSODEG00000016856	SRRT	96	60.936	ENSCSEG00000017878	srrt	50	68.791	Cynoglossus_semilaevis
ENSODEG00000016856	SRRT	93	56.967	ENSCSEG00000005233	-	54	60.256	Cynoglossus_semilaevis
ENSODEG00000016856	SRRT	89	71.645	ENSCVAG00000019848	srrt	54	75.824	Cyprinodon_variegatus
ENSODEG00000016856	SRRT	90	55.499	ENSCVAG00000017344	-	51	63.889	Cyprinodon_variegatus
ENSODEG00000016856	SRRT	89	73.002	ENSDARG00000017762	srrt	51	78.728	Danio_rerio
ENSODEG00000016856	SRRT	100	96.575	ENSDNOG00000003851	SRRT	100	96.575	Dasypus_novemcinctus
ENSODEG00000016856	SRRT	100	96.096	ENSDORG00000005584	Srrt	100	96.096	Dipodomys_ordii
ENSODEG00000016856	SRRT	89	50.526	FBgn0033062	Ars2	67	54.077	Drosophila_melanogaster
ENSODEG00000016856	SRRT	90	90.795	ENSETEG00000016175	SRRT	82	92.857	Echinops_telfairi
ENSODEG00000016856	SRRT	89	59.783	ENSEBUG00000008517	-	76	63.889	Eptatretus_burgeri
ENSODEG00000016856	SRRT	100	96.461	ENSEASG00005016956	SRRT	100	96.461	Equus_asinus_asinus
ENSODEG00000016856	SRRT	100	96.575	ENSECAG00000012292	SRRT	100	96.575	Equus_caballus
ENSODEG00000016856	SRRT	84	97.727	ENSEEUG00000009117	SRRT	85	97.727	Erinaceus_europaeus
ENSODEG00000016856	SRRT	89	71.398	ENSELUG00000006651	srrt	50	72.258	Esox_lucius
ENSODEG00000016856	SRRT	89	60.125	ENSELUG00000021216	-	53	65.254	Esox_lucius
ENSODEG00000016856	SRRT	100	96.804	ENSFCAG00000006855	SRRT	100	96.804	Felis_catus
ENSODEG00000016856	SRRT	57	53.642	ENSFALG00000007524	-	83	71.429	Ficedula_albicollis
ENSODEG00000016856	SRRT	100	95.607	ENSFDAG00000021347	SRRT	100	95.607	Fukomys_damarensis
ENSODEG00000016856	SRRT	93	55.852	ENSFHEG00000004105	-	93	57.112	Fundulus_heteroclitus
ENSODEG00000016856	SRRT	90	68.017	ENSFHEG00000002756	srrt	86	75.980	Fundulus_heteroclitus
ENSODEG00000016856	SRRT	86	59.424	ENSGMOG00000018694	-	84	63.858	Gadus_morhua
ENSODEG00000016856	SRRT	95	60.885	ENSGMOG00000018619	srrt	51	71.397	Gadus_morhua
ENSODEG00000016856	SRRT	89	57.479	ENSGAFG00000020383	-	54	61.905	Gambusia_affinis
ENSODEG00000016856	SRRT	89	71.645	ENSGAFG00000005423	srrt	51	75.824	Gambusia_affinis
ENSODEG00000016856	SRRT	93	55.306	ENSGACG00000001100	-	53	62.017	Gasterosteus_aculeatus
ENSODEG00000016856	SRRT	95	68.826	ENSGACG00000020387	srrt	51	75.546	Gasterosteus_aculeatus
ENSODEG00000016856	SRRT	100	97.146	ENSGGOG00000001508	SRRT	99	97.146	Gorilla_gorilla
ENSODEG00000016856	SRRT	89	71.645	ENSHBUG00000002942	srrt	50	75.604	Haplochromis_burtoni
ENSODEG00000016856	SRRT	100	97.267	ENSHGLG00000008344	Srrt	100	97.267	Heterocephalus_glaber_female
ENSODEG00000016856	SRRT	100	98.814	ENSHGLG00100018857	Srrt	100	98.814	Heterocephalus_glaber_male
ENSODEG00000016856	SRRT	90	57.602	ENSHCOG00000008904	-	56	61.171	Hippocampus_comes
ENSODEG00000016856	SRRT	98	63.668	ENSHCOG00000005403	srrt	96	62.816	Hippocampus_comes
ENSODEG00000016856	SRRT	52	77.462	ENSIPUG00000021150	srrt	51	77.462	Ictalurus_punctatus
ENSODEG00000016856	SRRT	100	97.477	ENSSTOG00000013776	SRRT	100	97.477	Ictidomys_tridecemlineatus
ENSODEG00000016856	SRRT	100	96.991	ENSJJAG00000010446	Srrt	100	96.991	Jaculus_jaculus
ENSODEG00000016856	SRRT	95	67.959	ENSKMAG00000013599	srrt	54	75.604	Kryptolebias_marmoratus
ENSODEG00000016856	SRRT	93	56.832	ENSKMAG00000008468	-	96	55.491	Kryptolebias_marmoratus
ENSODEG00000016856	SRRT	96	65.243	ENSLBEG00000016308	srrt	54	76.356	Labrus_bergylta
ENSODEG00000016856	SRRT	95	63.832	ENSLACG00000001089	SRRT	96	64.075	Latimeria_chalumnae
ENSODEG00000016856	SRRT	89	65.784	ENSLOCG00000013658	srrt	52	70.330	Lepisosteus_oculatus
ENSODEG00000016856	SRRT	100	96.571	ENSLAFG00000007725	SRRT	100	96.571	Loxodonta_africana
ENSODEG00000016856	SRRT	100	97.362	ENSMFAG00000033745	SRRT	100	97.362	Macaca_fascicularis
ENSODEG00000016856	SRRT	100	96.804	ENSMMUG00000021255	SRRT	100	96.804	Macaca_mulatta
ENSODEG00000016856	SRRT	100	96.804	ENSMNEG00000041864	SRRT	100	96.804	Macaca_nemestrina
ENSODEG00000016856	SRRT	100	97.362	ENSMLEG00000029479	SRRT	100	97.362	Mandrillus_leucophaeus
ENSODEG00000016856	SRRT	89	70.499	ENSMAMG00000014311	srrt	96	66.863	Mastacembelus_armatus
ENSODEG00000016856	SRRT	93	58.452	ENSMAMG00000010681	-	96	57.075	Mastacembelus_armatus
ENSODEG00000016856	SRRT	89	71.429	ENSMZEG00005016135	srrt	50	75.385	Maylandia_zebra
ENSODEG00000016856	SRRT	93	57.841	ENSMZEG00005028002	-	52	64.579	Maylandia_zebra
ENSODEG00000016856	SRRT	100	93.992	ENSMAUG00000011386	Srrt	100	94.574	Mesocricetus_auratus
ENSODEG00000016856	SRRT	100	97.032	ENSMICG00000009471	SRRT	100	97.032	Microcebus_murinus
ENSODEG00000016856	SRRT	100	95.543	ENSMOCG00000001971	Srrt	100	95.543	Microtus_ochrogaster
ENSODEG00000016856	SRRT	89	62.446	ENSMMOG00000011137	-	55	65.944	Mola_mola
ENSODEG00000016856	SRRT	99	66.023	ENSMMOG00000016399	srrt	54	75.764	Mola_mola
ENSODEG00000016856	SRRT	90	84.664	ENSMODG00000004862	SRRT	90	90.295	Monodelphis_domestica
ENSODEG00000016856	SRRT	89	67.028	ENSMALG00000018604	srrt	80	72.026	Monopterus_albus
ENSODEG00000016856	SRRT	99	51.394	ENSMALG00000005567	-	84	53.540	Monopterus_albus
ENSODEG00000016856	SRRT	100	97.106	MGP_CAROLIEiJ_G0027870	Srrt	100	99.254	Mus_caroli
ENSODEG00000016856	SRRT	100	97.106	ENSMUSG00000037364	Srrt	99	99.254	Mus_musculus
ENSODEG00000016856	SRRT	100	97.106	MGP_PahariEiJ_G0024456	Srrt	100	98.881	Mus_pahari
ENSODEG00000016856	SRRT	100	97.106	MGP_SPRETEiJ_G0028875	Srrt	100	99.254	Mus_spretus
ENSODEG00000016856	SRRT	100	96.689	ENSMPUG00000015839	SRRT	100	96.689	Mustela_putorius_furo
ENSODEG00000016856	SRRT	100	96.119	ENSMLUG00000009975	SRRT	100	96.119	Myotis_lucifugus
ENSODEG00000016856	SRRT	100	96.000	ENSNGAG00000023715	Srrt	100	96.000	Nannospalax_galili
ENSODEG00000016856	SRRT	89	70.435	ENSNBRG00000019100	srrt	96	63.486	Neolamprologus_brichardi
ENSODEG00000016856	SRRT	95	85.852	ENSNLEG00000011987	SRRT	99	85.208	Nomascus_leucogenys
ENSODEG00000016856	SRRT	98	74.242	ENSMEUG00000011941	SRRT	98	72.028	Notamacropus_eugenii
ENSODEG00000016856	SRRT	81	87.740	ENSOPRG00000002502	-	67	100.000	Ochotona_princeps
ENSODEG00000016856	SRRT	93	58.097	ENSONIG00000016080	-	52	64.301	Oreochromis_niloticus
ENSODEG00000016856	SRRT	89	71.861	ENSONIG00000004242	srrt	52	74.892	Oreochromis_niloticus
ENSODEG00000016856	SRRT	95	68.496	ENSORLG00000008120	srrt	52	75.165	Oryzias_latipes
ENSODEG00000016856	SRRT	94	68.303	ENSORLG00020003058	srrt	96	64.637	Oryzias_latipes_hni
ENSODEG00000016856	SRRT	95	68.293	ENSORLG00015008062	srrt	96	64.637	Oryzias_latipes_hsok
ENSODEG00000016856	SRRT	97	68.056	ENSOMEG00000003155	srrt	87	75.385	Oryzias_melastigma
ENSODEG00000016856	SRRT	89	60.684	ENSOMEG00000006963	-	53	65.510	Oryzias_melastigma
ENSODEG00000016856	SRRT	100	97.032	ENSOGAG00000017242	SRRT	100	97.032	Otolemur_garnettii
ENSODEG00000016856	SRRT	100	96.330	ENSOARG00000015645	SRRT	100	96.330	Ovis_aries
ENSODEG00000016856	SRRT	100	97.592	ENSPPAG00000041090	SRRT	100	97.592	Pan_paniscus
ENSODEG00000016856	SRRT	100	96.789	ENSPPRG00000009557	SRRT	100	96.789	Panthera_pardus
ENSODEG00000016856	SRRT	100	96.689	ENSPTIG00000014355	SRRT	100	96.689	Panthera_tigris_altaica
ENSODEG00000016856	SRRT	100	97.592	ENSPTRG00000019511	SRRT	100	97.592	Pan_troglodytes
ENSODEG00000016856	SRRT	100	92.979	ENSPANG00000020763	SRRT	98	94.302	Papio_anubis
ENSODEG00000016856	SRRT	96	71.515	ENSPKIG00000005434	srrt	54	79.004	Paramormyrops_kingsleyae
ENSODEG00000016856	SRRT	94	67.558	ENSPKIG00000022212	-	96	67.938	Paramormyrops_kingsleyae
ENSODEG00000016856	SRRT	100	79.463	ENSPSIG00000016311	SRRT	96	80.861	Pelodiscus_sinensis
ENSODEG00000016856	SRRT	96	65.833	ENSPMGG00000002841	srrt	56	71.645	Periophthalmus_magnuspinnatus
ENSODEG00000016856	SRRT	100	96.759	ENSPEMG00000010834	Srrt	100	96.759	Peromyscus_maniculatus_bairdii
ENSODEG00000016856	SRRT	99	58.238	ENSPMAG00000009614	-	55	64.286	Petromyzon_marinus
ENSODEG00000016856	SRRT	98	90.012	ENSPCIG00000000816	SRRT	98	90.012	Phascolarctos_cinereus
ENSODEG00000016856	SRRT	92	54.423	ENSPFOG00000016554	-	54	62.121	Poecilia_formosa
ENSODEG00000016856	SRRT	89	71.706	ENSPFOG00000005704	srrt	51	75.877	Poecilia_formosa
ENSODEG00000016856	SRRT	92	53.951	ENSPLAG00000004526	-	55	61.771	Poecilia_latipinna
ENSODEG00000016856	SRRT	89	71.429	ENSPLAG00000021992	srrt	51	75.604	Poecilia_latipinna
ENSODEG00000016856	SRRT	89	71.274	ENSPMEG00000001182	srrt	85	75.055	Poecilia_mexicana
ENSODEG00000016856	SRRT	90	53.612	ENSPMEG00000001520	-	53	61.098	Poecilia_mexicana
ENSODEG00000016856	SRRT	99	65.849	ENSPREG00000022308	srrt	51	75.877	Poecilia_reticulata
ENSODEG00000016856	SRRT	100	86.758	ENSPPYG00000017432	SRRT	100	86.758	Pongo_abelii
ENSODEG00000016856	SRRT	100	92.195	ENSPCAG00000001621	SRRT	100	92.195	Procavia_capensis
ENSODEG00000016856	SRRT	100	96.918	ENSPCOG00000025751	SRRT	100	96.918	Propithecus_coquereli
ENSODEG00000016856	SRRT	100	89.017	ENSPVAG00000000834	SRRT	100	88.382	Pteropus_vampyrus
ENSODEG00000016856	SRRT	89	71.429	ENSPNYG00000018710	srrt	52	75.385	Pundamilia_nyererei
ENSODEG00000016856	SRRT	88	76.000	ENSPNAG00000010629	srrt	95	55.137	Pygocentrus_nattereri
ENSODEG00000016856	SRRT	91	85.897	ENSRNOG00000048277	AABR07035787.1	93	85.867	Rattus_norvegicus
ENSODEG00000016856	SRRT	100	96.804	ENSRBIG00000035718	SRRT	100	96.804	Rhinopithecus_bieti
ENSODEG00000016856	SRRT	100	96.804	ENSRROG00000030622	SRRT	100	96.804	Rhinopithecus_roxellana
ENSODEG00000016856	SRRT	100	96.689	ENSSBOG00000033570	SRRT	100	96.689	Saimiri_boliviensis_boliviensis
ENSODEG00000016856	SRRT	100	86.882	ENSSHAG00000007349	-	100	85.669	Sarcophilus_harrisii
ENSODEG00000016856	SRRT	90	75.269	ENSSFOG00015017293	srrt	96	69.816	Scleropages_formosus
ENSODEG00000016856	SRRT	95	65.166	ENSSMAG00000015342	srrt	96	65.294	Scophthalmus_maximus
ENSODEG00000016856	SRRT	89	57.962	ENSSMAG00000018195	-	87	62.446	Scophthalmus_maximus
ENSODEG00000016856	SRRT	92	53.608	ENSSDUG00000002051	-	93	55.508	Seriola_dumerili
ENSODEG00000016856	SRRT	89	71.645	ENSSDUG00000012049	srrt	91	65.035	Seriola_dumerili
ENSODEG00000016856	SRRT	89	71.429	ENSSLDG00000017477	srrt	81	76.484	Seriola_lalandi_dorsalis
ENSODEG00000016856	SRRT	89	71.828	ENSSPAG00000005665	srrt	51	75.764	Stegastes_partitus
ENSODEG00000016856	SRRT	89	55.895	ENSSPAG00000018943	-	95	56.242	Stegastes_partitus
ENSODEG00000016856	SRRT	95	93.591	ENSSSCG00000024789	SRRT	99	93.521	Sus_scrofa
ENSODEG00000016856	SRRT	96	64.235	ENSTRUG00000016075	srrt	96	66.161	Takifugu_rubripes
ENSODEG00000016856	SRRT	90	54.626	ENSTRUG00000000023	-	51	60.641	Takifugu_rubripes
ENSODEG00000016856	SRRT	89	70.513	ENSTNIG00000011779	srrt	72	73.885	Tetraodon_nigroviridis
ENSODEG00000016856	SRRT	94	56.048	ENSTNIG00000003111	-	53	61.987	Tetraodon_nigroviridis
ENSODEG00000016856	SRRT	64	57.988	ENSTNIG00000019765	-	95	64.038	Tetraodon_nigroviridis
ENSODEG00000016856	SRRT	81	91.599	ENSTBEG00000005212	SRRT	66	96.641	Tupaia_belangeri
ENSODEG00000016856	SRRT	100	95.890	ENSTTRG00000011104	SRRT	100	95.890	Tursiops_truncatus
ENSODEG00000016856	SRRT	100	94.220	ENSUAMG00000027997	SRRT	98	96.651	Ursus_americanus
ENSODEG00000016856	SRRT	100	96.804	ENSUMAG00000011295	SRRT	100	96.804	Ursus_maritimus
ENSODEG00000016856	SRRT	100	96.804	ENSVVUG00000023572	SRRT	100	96.804	Vulpes_vulpes
ENSODEG00000016856	SRRT	89	71.888	ENSXETG00000025124	srrt	96	61.268	Xenopus_tropicalis
ENSODEG00000016856	SRRT	89	52.088	ENSXCOG00000013105	-	90	52.308	Xiphophorus_couchianus
ENSODEG00000016856	SRRT	92	54.332	ENSXMAG00000002090	-	54	62.391	Xiphophorus_maculatus
ENSODEG00000016856	SRRT	89	72.078	ENSXMAG00000007627	srrt	56	75.877	Xiphophorus_maculatus