EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000017109 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: DNA-directed RNA polymerases I and III subunit RPAC1-like
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 739 bases
Position: chrJH651571.1:6710313-6711051
Accession: 101582710
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000023337	RNA_pol_A_bac	PF01000.26	9.8e-18	1	1
ENSODEP00000023337	RNA_pol_L	PF01193.24	9.1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000023607	-	660	XM_012515265	ENSODEP00000023337	219 (aa)	XP_012370719	-

Gene Model

Click here to download ENSODEG00000017109's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000017109's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000017109	-	100	99.087	ENSODEG00000015831	-	63	99.087

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000017109	-	100	93.151	ENSG00000171453	POLR1C	75	93.151	Homo_sapiens
ENSODEG00000017109	-	97	71.698	ENSAPOG00000024356	polr1c	62	71.233	Acanthochromis_polyacanthus
ENSODEG00000017109	-	100	92.694	ENSAMEG00000012205	POLR1C	63	92.694	Ailuropoda_melanoleuca
ENSODEG00000017109	-	97	71.226	ENSACIG00000016268	polr1c	67	70.776	Amphilophus_citrinellus
ENSODEG00000017109	-	97	68.868	ENSAOCG00000011687	polr1c	60	68.493	Amphiprion_ocellaris
ENSODEG00000017109	-	97	69.340	ENSAPEG00000002433	polr1c	62	68.950	Amphiprion_percula
ENSODEG00000017109	-	96	71.905	ENSATEG00000005985	polr1c	62	71.429	Anabas_testudineus
ENSODEG00000017109	-	100	79.909	ENSAPLG00000002908	POLR1C	73	79.909	Anas_platyrhynchos
ENSODEG00000017109	-	82	75.419	ENSACAG00000009764	POLR1C	51	75.419	Anolis_carolinensis
ENSODEG00000017109	-	100	92.694	ENSANAG00000025805	POLR1C	63	92.694	Aotus_nancymaae
ENSODEG00000017109	-	97	69.340	ENSACLG00000006573	polr1c	62	68.950	Astatotilapia_calliptera
ENSODEG00000017109	-	100	70.776	ENSAMXG00000012062	polr1c	63	70.776	Astyanax_mexicanus
ENSODEG00000017109	-	100	92.237	ENSBTAG00000018969	POLR1C	63	92.237	Bos_taurus
ENSODEG00000017109	-	97	50.467	WBGene00019275	rpac-40	58	50.467	Caenorhabditis_elegans
ENSODEG00000017109	-	100	92.694	ENSCJAG00000005594	POLR1C	63	92.694	Callithrix_jacchus
ENSODEG00000017109	-	100	92.694	ENSCAFG00000001872	POLR1C	63	92.694	Canis_familiaris
ENSODEG00000017109	-	100	92.694	ENSCAFG00020012018	POLR1C	63	92.694	Canis_lupus_dingo
ENSODEG00000017109	-	99	92.661	ENSCHIG00000004352	POLR1C	63	92.661	Capra_hircus
ENSODEG00000017109	-	100	93.607	ENSTSYG00000011921	POLR1C	63	93.607	Carlito_syrichta
ENSODEG00000017109	-	100	94.977	ENSCAPG00000015364	POLR1C	64	94.977	Cavia_aperea
ENSODEG00000017109	-	100	95.434	ENSCPOG00000038098	POLR1C	63	95.434	Cavia_porcellus
ENSODEG00000017109	-	100	93.151	ENSCCAG00000020169	POLR1C	63	93.151	Cebus_capucinus
ENSODEG00000017109	-	100	93.151	ENSCATG00000044045	POLR1C	63	93.151	Cercocebus_atys
ENSODEG00000017109	-	100	95.890	ENSCLAG00000009266	POLR1C	63	95.890	Chinchilla_lanigera
ENSODEG00000017109	-	100	92.237	ENSCSAG00000011913	POLR1C	63	92.237	Chlorocebus_sabaeus
ENSODEG00000017109	-	97	91.981	ENSCHOG00000006601	POLR1C	100	91.981	Choloepus_hoffmanni
ENSODEG00000017109	-	100	79.909	ENSCPBG00000025203	POLR1C	63	79.909	Chrysemys_picta_bellii
ENSODEG00000017109	-	99	52.055	ENSCING00000003563	-	63	52.055	Ciona_intestinalis
ENSODEG00000017109	-	100	92.694	ENSCANG00000043167	POLR1C	63	92.694	Colobus_angolensis_palliatus
ENSODEG00000017109	-	100	91.324	ENSCGRG00001017533	Polr1c	63	91.324	Cricetulus_griseus_chok1gshd
ENSODEG00000017109	-	100	91.324	ENSCGRG00000013225	Polr1c	73	91.324	Cricetulus_griseus_crigri
ENSODEG00000017109	-	99	70.833	ENSCSEG00000018097	polr1c	62	70.833	Cynoglossus_semilaevis
ENSODEG00000017109	-	97	70.755	ENSCVAG00000005684	polr1c	88	69.863	Cyprinodon_variegatus
ENSODEG00000017109	-	99	71.560	ENSDARG00000039400	polr1c	60	71.560	Danio_rerio
ENSODEG00000017109	-	100	93.151	ENSDNOG00000042693	POLR1C	63	93.151	Dasypus_novemcinctus
ENSODEG00000017109	-	100	94.521	ENSDORG00000000429	Polr1c	63	94.521	Dipodomys_ordii
ENSODEG00000017109	-	97	55.399	FBgn0031657	CG3756	63	55.399	Drosophila_melanogaster
ENSODEG00000017109	-	99	87.615	ENSETEG00000010807	POLR1C	63	87.615	Echinops_telfairi
ENSODEG00000017109	-	98	72.558	ENSEBUG00000013725	polr1c	66	72.558	Eptatretus_burgeri
ENSODEG00000017109	-	100	93.607	ENSEASG00005003338	POLR1C	63	93.607	Equus_asinus_asinus
ENSODEG00000017109	-	100	93.607	ENSECAG00000023516	POLR1C	62	93.607	Equus_caballus
ENSODEG00000017109	-	100	94.521	ENSEEUG00000005471	POLR1C	63	94.521	Erinaceus_europaeus
ENSODEG00000017109	-	100	72.603	ENSELUG00000013027	polr1c	63	72.603	Esox_lucius
ENSODEG00000017109	-	100	94.064	ENSFCAG00000009735	POLR1C	63	94.064	Felis_catus
ENSODEG00000017109	-	100	78.995	ENSFALG00000012111	POLR1C	68	78.995	Ficedula_albicollis
ENSODEG00000017109	-	100	93.607	ENSFDAG00000008428	POLR1C	63	93.607	Fukomys_damarensis
ENSODEG00000017109	-	99	51.835	ENSFHEG00000000262	polr1c	57	52.294	Fundulus_heteroclitus
ENSODEG00000017109	-	100	69.091	ENSGMOG00000013878	polr1c	68	69.091	Gadus_morhua
ENSODEG00000017109	-	100	79.909	ENSGALG00000010349	POLR1C	63	79.909	Gallus_gallus
ENSODEG00000017109	-	97	70.283	ENSGAFG00000010153	polr1c	62	69.406	Gambusia_affinis
ENSODEG00000017109	-	97	71.226	ENSGACG00000002453	polr1c	62	70.776	Gasterosteus_aculeatus
ENSODEG00000017109	-	100	79.452	ENSGAGG00000010640	POLR1C	68	79.452	Gopherus_agassizii
ENSODEG00000017109	-	100	93.151	ENSGGOG00000010903	POLR1C	63	93.151	Gorilla_gorilla
ENSODEG00000017109	-	100	69.406	ENSHBUG00000017816	polr1c	67	69.406	Haplochromis_burtoni
ENSODEG00000017109	-	100	93.607	ENSHGLG00000019441	POLR1C	84	93.607	Heterocephalus_glaber_female
ENSODEG00000017109	-	100	93.151	ENSHGLG00100005970	POLR1C	84	93.151	Heterocephalus_glaber_male
ENSODEG00000017109	-	98	67.442	ENSHCOG00000002179	polr1c	61	67.442	Hippocampus_comes
ENSODEG00000017109	-	99	70.968	ENSIPUG00000024464	polr1c	62	70.968	Ictalurus_punctatus
ENSODEG00000017109	-	100	93.607	ENSSTOG00000010631	POLR1C	63	93.607	Ictidomys_tridecemlineatus
ENSODEG00000017109	-	100	92.237	ENSJJAG00000023110	Polr1c	63	92.237	Jaculus_jaculus
ENSODEG00000017109	-	97	70.283	ENSKMAG00000014305	polr1c	61	68.950	Kryptolebias_marmoratus
ENSODEG00000017109	-	97	69.340	ENSLBEG00000014925	polr1c	62	68.950	Labrus_bergylta
ENSODEG00000017109	-	100	65.455	ENSLACG00000012567	POLR1C	64	65.455	Latimeria_chalumnae
ENSODEG00000017109	-	100	70.320	ENSLOCG00000016710	polr1c	60	70.320	Lepisosteus_oculatus
ENSODEG00000017109	-	99	93.578	ENSLAFG00000026248	POLR1C	72	93.578	Loxodonta_africana
ENSODEG00000017109	-	100	92.694	ENSMFAG00000046295	POLR1C	63	92.694	Macaca_fascicularis
ENSODEG00000017109	-	100	92.694	ENSMMUG00000015192	POLR1C	63	92.694	Macaca_mulatta
ENSODEG00000017109	-	100	92.694	ENSMNEG00000028073	POLR1C	63	92.694	Macaca_nemestrina
ENSODEG00000017109	-	100	93.151	ENSMLEG00000034818	POLR1C	63	93.151	Mandrillus_leucophaeus
ENSODEG00000017109	-	100	68.950	ENSMAMG00000008700	polr1c	62	68.950	Mastacembelus_armatus
ENSODEG00000017109	-	97	69.340	ENSMZEG00005018545	polr1c	62	68.950	Maylandia_zebra
ENSODEG00000017109	-	100	79.452	ENSMGAG00000011020	POLR1C	77	79.452	Meleagris_gallopavo
ENSODEG00000017109	-	100	92.237	ENSMAUG00000014329	Polr1c	63	92.237	Mesocricetus_auratus
ENSODEG00000017109	-	100	91.781	ENSMICG00000005027	POLR1C	63	91.781	Microcebus_murinus
ENSODEG00000017109	-	100	92.694	ENSMOCG00000017549	Polr1c	63	92.694	Microtus_ochrogaster
ENSODEG00000017109	-	98	50.233	ENSMMOG00000005380	polr1c	56	50.698	Mola_mola
ENSODEG00000017109	-	100	86.758	ENSMODG00000018964	POLR1C	75	86.758	Monodelphis_domestica
ENSODEG00000017109	-	100	52.511	ENSMALG00000011711	polr1c	57	52.968	Monopterus_albus
ENSODEG00000017109	-	100	91.781	MGP_CAROLIEiJ_G0021662	Polr1c	84	91.781	Mus_caroli
ENSODEG00000017109	-	100	91.324	ENSMUSG00000067148	Polr1c	84	91.324	Mus_musculus
ENSODEG00000017109	-	100	91.781	MGP_PahariEiJ_G0020654	Polr1c	84	91.781	Mus_pahari
ENSODEG00000017109	-	100	91.781	MGP_SPRETEiJ_G0022574	Polr1c	84	91.781	Mus_spretus
ENSODEG00000017109	-	100	93.607	ENSMPUG00000012916	POLR1C	58	93.607	Mustela_putorius_furo
ENSODEG00000017109	-	100	93.607	ENSMLUG00000017751	POLR1C	63	93.607	Myotis_lucifugus
ENSODEG00000017109	-	99	92.202	ENSNGAG00000023487	Polr1c	75	92.202	Nannospalax_galili
ENSODEG00000017109	-	97	69.811	ENSNBRG00000018742	polr1c	62	69.406	Neolamprologus_brichardi
ENSODEG00000017109	-	100	93.151	ENSNLEG00000004035	POLR1C	63	93.151	Nomascus_leucogenys
ENSODEG00000017109	-	100	67.123	ENSMEUG00000006778	POLR1C	63	67.123	Notamacropus_eugenii
ENSODEG00000017109	-	64	90.780	ENSOPRG00000000145	POLR1C	53	90.780	Ochotona_princeps
ENSODEG00000017109	-	97	69.811	ENSONIG00000013133	polr1c	61	69.406	Oreochromis_niloticus
ENSODEG00000017109	-	100	81.735	ENSOANG00000003043	POLR1C	63	81.735	Ornithorhynchus_anatinus
ENSODEG00000017109	-	100	91.781	ENSOCUG00000005504	POLR1C	63	91.781	Oryctolagus_cuniculus
ENSODEG00000017109	-	98	68.372	ENSORLG00000019743	polr1c	62	68.224	Oryzias_latipes
ENSODEG00000017109	-	92	59.901	ENSORLG00020005555	polr1c	60	59.901	Oryzias_latipes_hni
ENSODEG00000017109	-	98	69.302	ENSORLG00020006489	POLR1C	64	69.159	Oryzias_latipes_hni
ENSODEG00000017109	-	98	68.372	ENSORLG00015013322	polr1c	61	68.372	Oryzias_latipes_hsok
ENSODEG00000017109	-	97	70.892	ENSOMEG00000016527	polr1c	61	70.892	Oryzias_melastigma
ENSODEG00000017109	-	100	92.694	ENSOGAG00000016318	POLR1C	63	92.694	Otolemur_garnettii
ENSODEG00000017109	-	100	92.694	ENSOARG00000007503	POLR1C	63	92.694	Ovis_aries
ENSODEG00000017109	-	100	93.151	ENSPPAG00000043678	POLR1C	63	93.151	Pan_paniscus
ENSODEG00000017109	-	100	94.064	ENSPPRG00000009760	POLR1C	63	94.064	Panthera_pardus
ENSODEG00000017109	-	100	94.064	ENSPTIG00000014813	POLR1C	63	94.064	Panthera_tigris_altaica
ENSODEG00000017109	-	100	93.151	ENSPTRG00000018202	POLR1C	63	93.151	Pan_troglodytes
ENSODEG00000017109	-	100	93.151	ENSPANG00000009025	POLR1C	63	93.151	Papio_anubis
ENSODEG00000017109	-	100	72.603	ENSPKIG00000009858	polr1c	63	72.603	Paramormyrops_kingsleyae
ENSODEG00000017109	-	99	77.982	ENSPSIG00000012580	POLR1C	59	77.982	Pelodiscus_sinensis
ENSODEG00000017109	-	99	52.535	ENSPMGG00000012121	polr1c	56	52.995	Periophthalmus_magnuspinnatus
ENSODEG00000017109	-	100	92.237	ENSPEMG00000006970	Polr1c	63	92.237	Peromyscus_maniculatus_bairdii
ENSODEG00000017109	-	100	68.468	ENSPMAG00000005560	polr1c	63	68.468	Petromyzon_marinus
ENSODEG00000017109	-	100	86.758	ENSPCIG00000028137	POLR1C	62	86.758	Phascolarctos_cinereus
ENSODEG00000017109	-	97	71.226	ENSPFOG00000014357	polr1c	61	70.320	Poecilia_formosa
ENSODEG00000017109	-	97	71.226	ENSPFOG00000014342	POLR1C	62	70.320	Poecilia_formosa
ENSODEG00000017109	-	97	71.226	ENSPLAG00000004111	polr1c	91	70.320	Poecilia_latipinna
ENSODEG00000017109	-	97	71.226	ENSPMEG00000008420	polr1c	62	70.320	Poecilia_mexicana
ENSODEG00000017109	-	97	71.226	ENSPMEG00000011877	-	62	70.320	Poecilia_mexicana
ENSODEG00000017109	-	99	70.507	ENSPREG00000007985	polr1c	63	70.507	Poecilia_reticulata
ENSODEG00000017109	-	100	93.151	ENSPPYG00000016645	POLR1C	64	93.151	Pongo_abelii
ENSODEG00000017109	-	100	91.781	ENSPCOG00000024628	POLR1C	63	91.781	Propithecus_coquereli
ENSODEG00000017109	-	85	93.548	ENSPVAG00000005689	POLR1C	54	93.548	Pteropus_vampyrus
ENSODEG00000017109	-	100	69.406	ENSPNYG00000003620	polr1c	62	69.406	Pundamilia_nyererei
ENSODEG00000017109	-	100	70.776	ENSPNAG00000008443	polr1c	68	70.776	Pygocentrus_nattereri
ENSODEG00000017109	-	100	91.324	ENSRNOG00000019079	Polr1c	84	91.324	Rattus_norvegicus
ENSODEG00000017109	-	100	92.694	ENSRBIG00000007155	POLR1C	63	92.694	Rhinopithecus_bieti
ENSODEG00000017109	-	100	93.151	ENSRROG00000000257	POLR1C	63	93.151	Rhinopithecus_roxellana
ENSODEG00000017109	-	94	48.058	YPR110C	RPC40	61	48.058	Saccharomyces_cerevisiae
ENSODEG00000017109	-	100	93.151	ENSSBOG00000025735	POLR1C	58	93.333	Saimiri_boliviensis_boliviensis
ENSODEG00000017109	-	100	87.215	ENSSHAG00000014456	POLR1C	65	87.215	Sarcophilus_harrisii
ENSODEG00000017109	-	99	72.936	ENSSFOG00015019860	polr1c	63	72.936	Scleropages_formosus
ENSODEG00000017109	-	99	69.725	ENSSMAG00000018865	polr1c	63	69.725	Scophthalmus_maximus
ENSODEG00000017109	-	97	70.755	ENSSDUG00000015745	polr1c	57	70.642	Seriola_dumerili
ENSODEG00000017109	-	97	70.755	ENSSLDG00000018285	polr1c	57	70.642	Seriola_lalandi_dorsalis
ENSODEG00000017109	-	99	75.926	ENSSPUG00000011822	POLR1C	63	75.926	Sphenodon_punctatus
ENSODEG00000017109	-	97	69.811	ENSSPAG00000022369	polr1c	62	69.406	Stegastes_partitus
ENSODEG00000017109	-	100	91.781	ENSSSCG00000028007	POLR1C	71	91.781	Sus_scrofa
ENSODEG00000017109	-	100	79.452	ENSTGUG00000009159	POLR1C	65	79.452	Taeniopygia_guttata
ENSODEG00000017109	-	99	68.919	ENSTRUG00000006264	polr1c	63	68.919	Takifugu_rubripes
ENSODEG00000017109	-	58	72.441	ENSTNIG00000019804	polr1c	99	72.441	Tetraodon_nigroviridis
ENSODEG00000017109	-	81	93.258	ENSTBEG00000002254	POLR1C	100	93.258	Tupaia_belangeri
ENSODEG00000017109	-	100	89.498	ENSTTRG00000006344	POLR1C	63	89.498	Tursiops_truncatus
ENSODEG00000017109	-	100	93.151	ENSUAMG00000025602	POLR1C	63	93.151	Ursus_americanus
ENSODEG00000017109	-	100	93.151	ENSUMAG00000005938	POLR1C	63	93.151	Ursus_maritimus
ENSODEG00000017109	-	100	87.671	ENSVVUG00000028922	POLR1C	62	87.671	Vulpes_vulpes
ENSODEG00000017109	-	99	76.037	ENSXETG00000010882	polr1c	63	76.037	Xenopus_tropicalis
ENSODEG00000017109	-	99	70.968	ENSXCOG00000014185	polr1c	62	70.968	Xiphophorus_couchianus
ENSODEG00000017109	-	97	71.226	ENSXMAG00000015076	polr1c	62	70.320	Xiphophorus_maculatus