EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000017391 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: vigilin pseudogene
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 3793 bases
Position: chrJH651517.1:35724842-35728634
Accession: 101559586
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000023757	KH_1	PF00013.29	2.6e-160	1	14
ENSODEP00000023757	KH_1	PF00013.29	2.6e-160	2	14
ENSODEP00000023757	KH_1	PF00013.29	2.6e-160	3	14
ENSODEP00000023757	KH_1	PF00013.29	2.6e-160	4	14
ENSODEP00000023757	KH_1	PF00013.29	2.6e-160	5	14
ENSODEP00000023757	KH_1	PF00013.29	2.6e-160	6	14
ENSODEP00000023757	KH_1	PF00013.29	2.6e-160	7	14
ENSODEP00000023757	KH_1	PF00013.29	2.6e-160	8	14
ENSODEP00000023757	KH_1	PF00013.29	2.6e-160	9	14
ENSODEP00000023757	KH_1	PF00013.29	2.6e-160	10	14
ENSODEP00000023757	KH_1	PF00013.29	2.6e-160	11	14
ENSODEP00000023757	KH_1	PF00013.29	2.6e-160	12	14
ENSODEP00000023757	KH_1	PF00013.29	2.6e-160	13	14
ENSODEP00000023757	KH_1	PF00013.29	2.6e-160	14	14

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000024029	-	3738	-	ENSODEP00000023757	1245 (aa)	-	-

Gene Model

Click here to download ENSODEG00000017391's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000017391's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000017391	-	100	93.671	ENSODEG00000012313	-	100	93.671

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000017391	-	100	90.773	ENSG00000115677	HDLBP	100	100.000	Homo_sapiens
ENSODEG00000017391	-	100	74.725	ENSAPOG00000012609	hdlbpa	99	74.725	Acanthochromis_polyacanthus
ENSODEG00000017391	-	100	89.772	ENSAMEG00000016552	HDLBP	100	89.772	Ailuropoda_melanoleuca
ENSODEG00000017391	-	100	67.059	ENSACIG00000006015	hdlbpa	99	67.059	Amphilophus_citrinellus
ENSODEG00000017391	-	100	74.725	ENSAOCG00000000300	hdlbpa	99	74.725	Amphiprion_ocellaris
ENSODEG00000017391	-	100	74.647	ENSAPEG00000000522	hdlbpa	99	75.356	Amphiprion_percula
ENSODEG00000017391	-	100	74.333	ENSATEG00000009748	hdlbpa	99	74.333	Anabas_testudineus
ENSODEG00000017391	-	100	83.281	ENSACAG00000001556	HDLBP	100	83.281	Anolis_carolinensis
ENSODEG00000017391	-	100	90.852	ENSANAG00000020545	HDLBP	100	90.852	Aotus_nancymaae
ENSODEG00000017391	-	100	74.568	ENSACLG00000025965	hdlbpa	99	74.568	Astatotilapia_calliptera
ENSODEG00000017391	-	93	75.445	ENSAMXG00000004221	hdlbpa	99	75.445	Astyanax_mexicanus
ENSODEG00000017391	-	100	89.826	ENSBTAG00000004315	HDLBP	100	89.826	Bos_taurus
ENSODEG00000017391	-	100	90.472	ENSCJAG00000006152	HDLBP	100	90.472	Callithrix_jacchus
ENSODEG00000017391	-	100	90.221	ENSCAFG00000012913	HDLBP	100	90.221	Canis_familiaris
ENSODEG00000017391	-	100	90.221	ENSCAFG00020025089	HDLBP	100	90.221	Canis_lupus_dingo
ENSODEG00000017391	-	100	89.669	ENSCHIG00000022364	HDLBP	100	89.669	Capra_hircus
ENSODEG00000017391	-	100	90.300	ENSTSYG00000002379	HDLBP	100	90.300	Carlito_syrichta
ENSODEG00000017391	-	100	88.133	ENSCAPG00000008584	HDLBP	100	88.133	Cavia_aperea
ENSODEG00000017391	-	100	92.326	ENSCPOG00000006297	HDLBP	100	92.326	Cavia_porcellus
ENSODEG00000017391	-	100	90.694	ENSCCAG00000023361	-	100	90.694	Cebus_capucinus
ENSODEG00000017391	-	92	66.061	ENSCCAG00000037920	-	100	66.061	Cebus_capucinus
ENSODEG00000017391	-	100	90.773	ENSCATG00000039363	HDLBP	100	90.773	Cercocebus_atys
ENSODEG00000017391	-	100	92.484	ENSCLAG00000002365	HDLBP	100	92.484	Chinchilla_lanigera
ENSODEG00000017391	-	100	89.425	ENSCSAG00000005781	HDLBP	100	89.425	Chlorocebus_sabaeus
ENSODEG00000017391	-	90	63.422	ENSCHOG00000003882	-	100	63.422	Choloepus_hoffmanni
ENSODEG00000017391	-	100	83.902	ENSCPBG00000002442	HDLBP	100	83.902	Chrysemys_picta_bellii
ENSODEG00000017391	-	100	90.694	ENSCANG00000033571	HDLBP	100	90.694	Colobus_angolensis_palliatus
ENSODEG00000017391	-	90	46.186	ENSCGRG00001010570	4921511C20Rik	100	46.186	Cricetulus_griseus_chok1gshd
ENSODEG00000017391	-	100	90.773	ENSCGRG00001006086	Hdlbp	100	90.773	Cricetulus_griseus_chok1gshd
ENSODEG00000017391	-	97	45.793	ENSCGRG00000015720	Gm382	98	45.550	Cricetulus_griseus_crigri
ENSODEG00000017391	-	100	90.773	ENSCGRG00000014444	Hdlbp	100	90.773	Cricetulus_griseus_crigri
ENSODEG00000017391	-	100	73.958	ENSCSEG00000008853	hdlbpa	99	73.958	Cynoglossus_semilaevis
ENSODEG00000017391	-	100	74.115	ENSCVAG00000017892	hdlbpa	99	74.115	Cyprinodon_variegatus
ENSODEG00000017391	-	100	74.295	ENSDARG00000009830	hdlbpa	100	77.189	Danio_rerio
ENSODEG00000017391	-	100	88.356	ENSDNOG00000006753	HDLBP	100	88.356	Dasypus_novemcinctus
ENSODEG00000017391	-	98	87.387	ENSETEG00000005416	-	79	87.387	Echinops_telfairi
ENSODEG00000017391	-	100	90.694	ENSEASG00005008249	HDLBP	100	90.694	Equus_asinus_asinus
ENSODEG00000017391	-	99	54.562	ENSECAG00000030885	-	99	54.562	Equus_caballus
ENSODEG00000017391	-	99	49.732	ENSECAG00000028723	-	93	49.732	Equus_caballus
ENSODEG00000017391	-	100	90.694	ENSECAG00000012829	HDLBP	100	90.694	Equus_caballus
ENSODEG00000017391	-	93	77.708	ENSEEUG00000014648	HDLBP	100	77.708	Erinaceus_europaeus
ENSODEG00000017391	-	100	72.854	ENSELUG00000010700	hdlbpa	99	72.854	Esox_lucius
ENSODEG00000017391	-	100	90.300	ENSFCAG00000010455	HDLBP	100	90.300	Felis_catus
ENSODEG00000017391	-	100	85.095	ENSFALG00000003437	HDLBP	100	85.252	Ficedula_albicollis
ENSODEG00000017391	-	100	92.174	ENSFDAG00000000456	HDLBP	100	92.174	Fukomys_damarensis
ENSODEG00000017391	-	100	73.920	ENSFHEG00000004848	hdlbpa	99	73.998	Fundulus_heteroclitus
ENSODEG00000017391	-	100	72.492	ENSGMOG00000009932	hdlbpa	99	72.492	Gadus_morhua
ENSODEG00000017391	-	100	85.410	ENSGALG00000005823	HDLBP	100	85.489	Gallus_gallus
ENSODEG00000017391	-	100	51.625	ENSGAFG00000016766	hdlbpa	99	51.625	Gambusia_affinis
ENSODEG00000017391	-	100	73.291	ENSGACG00000004648	hdlbpa	99	73.291	Gasterosteus_aculeatus
ENSODEG00000017391	-	100	85.804	ENSGAGG00000004256	HDLBP	100	85.804	Gopherus_agassizii
ENSODEG00000017391	-	100	90.773	ENSGGOG00000004392	HDLBP	100	90.773	Gorilla_gorilla
ENSODEG00000017391	-	100	74.568	ENSHBUG00000001136	hdlbpa	99	74.568	Haplochromis_burtoni
ENSODEG00000017391	-	100	91.858	ENSHGLG00000004910	HDLBP	100	91.858	Heterocephalus_glaber_female
ENSODEG00000017391	-	100	91.858	ENSHGLG00100013326	HDLBP	100	96.067	Heterocephalus_glaber_male
ENSODEG00000017391	-	100	73.573	ENSHCOG00000014837	hdlbpa	99	73.729	Hippocampus_comes
ENSODEG00000017391	-	84	63.433	ENSIPUG00000013177	-	93	63.433	Ictalurus_punctatus
ENSODEG00000017391	-	100	74.065	ENSIPUG00000013088	hdlbp	99	74.065	Ictalurus_punctatus
ENSODEG00000017391	-	100	90.672	ENSSTOG00000013331	HDLBP	100	90.672	Ictidomys_tridecemlineatus
ENSODEG00000017391	-	93	40.424	ENSJJAG00000013712	-	95	40.424	Jaculus_jaculus
ENSODEG00000017391	-	100	91.325	ENSJJAG00000003596	Hdlbp	100	91.325	Jaculus_jaculus
ENSODEG00000017391	-	100	73.742	ENSKMAG00000007571	hdlbpa	99	73.742	Kryptolebias_marmoratus
ENSODEG00000017391	-	100	74.181	ENSLBEG00000027461	hdlbpa	99	74.181	Labrus_bergylta
ENSODEG00000017391	-	100	79.072	ENSLACG00000003592	HDLBP	99	79.072	Latimeria_chalumnae
ENSODEG00000017391	-	100	76.355	ENSLOCG00000006278	hdlbpa	99	76.355	Lepisosteus_oculatus
ENSODEG00000017391	-	100	90.142	ENSLAFG00000014826	HDLBP	100	90.142	Loxodonta_africana
ENSODEG00000017391	-	100	90.773	ENSMFAG00000033641	HDLBP	100	90.773	Macaca_fascicularis
ENSODEG00000017391	-	100	90.457	ENSMMUG00000004730	HDLBP	100	90.457	Macaca_mulatta
ENSODEG00000017391	-	100	90.773	ENSMNEG00000024260	HDLBP	100	90.773	Macaca_nemestrina
ENSODEG00000017391	-	100	90.773	ENSMLEG00000042734	HDLBP	100	90.773	Mandrillus_leucophaeus
ENSODEG00000017391	-	100	73.940	ENSMAMG00000008611	hdlbpa	99	74.097	Mastacembelus_armatus
ENSODEG00000017391	-	100	74.568	ENSMZEG00005009513	hdlbpa	99	74.568	Maylandia_zebra
ENSODEG00000017391	-	100	82.886	ENSMGAG00000003686	HDLBP	100	85.247	Meleagris_gallopavo
ENSODEG00000017391	-	100	90.931	ENSMAUG00000017743	Hdlbp	100	90.931	Mesocricetus_auratus
ENSODEG00000017391	-	100	90.142	ENSMICG00000004569	HDLBP	100	90.142	Microcebus_murinus
ENSODEG00000017391	-	100	91.088	ENSMOCG00000006679	Hdlbp	100	91.088	Microtus_ochrogaster
ENSODEG00000017391	-	98	70.688	ENSMMOG00000006880	hdlbpa	99	70.688	Mola_mola
ENSODEG00000017391	-	100	85.837	ENSMODG00000016033	HDLBP	100	85.837	Monodelphis_domestica
ENSODEG00000017391	-	100	74.019	ENSMALG00000015095	hdlbpa	99	74.019	Monopterus_albus
ENSODEG00000017391	-	87	45.588	MGP_CAROLIEiJ_G0033374	4921511C20Rik	100	45.588	Mus_caroli
ENSODEG00000017391	-	95	44.546	MGP_CAROLIEiJ_G0033373	Gm382	95	44.333	Mus_caroli
ENSODEG00000017391	-	100	91.167	MGP_CAROLIEiJ_G0014456	Hdlbp	100	95.506	Mus_caroli
ENSODEG00000017391	-	87	45.032	ENSMUSG00000049815	4921511C20Rik	100	45.032	Mus_musculus
ENSODEG00000017391	-	100	91.009	ENSMUSG00000034088	Hdlbp	100	95.506	Mus_musculus
ENSODEG00000017391	-	95	43.973	ENSMUSG00000062791	Gm382	95	43.594	Mus_musculus
ENSODEG00000017391	-	88	44.280	MGP_PahariEiJ_G0031914	4921511C20Rik	100	44.280	Mus_pahari
ENSODEG00000017391	-	94	44.790	MGP_PahariEiJ_G0031913	Gm382	94	44.790	Mus_pahari
ENSODEG00000017391	-	100	91.088	MGP_PahariEiJ_G0027692	Hdlbp	100	95.506	Mus_pahari
ENSODEG00000017391	-	90	44.068	MGP_SPRETEiJ_G0034539	4921511C20Rik	100	44.068	Mus_spretus
ENSODEG00000017391	-	94	43.453	MGP_SPRETEiJ_G0034538	Gm382	95	43.453	Mus_spretus
ENSODEG00000017391	-	100	91.167	MGP_SPRETEiJ_G0015260	Hdlbp	100	95.506	Mus_spretus
ENSODEG00000017391	-	100	90.379	ENSMPUG00000000163	HDLBP	100	90.379	Mustela_putorius_furo
ENSODEG00000017391	-	100	90.435	ENSMLUG00000005628	HDLBP	100	90.435	Myotis_lucifugus
ENSODEG00000017391	-	100	91.167	ENSNGAG00000014873	Hdlbp	100	91.167	Nannospalax_galili
ENSODEG00000017391	-	98	75.000	ENSNBRG00000000051	hdlbpa	98	75.000	Neolamprologus_brichardi
ENSODEG00000017391	-	100	90.852	ENSNLEG00000013818	HDLBP	100	90.852	Nomascus_leucogenys
ENSODEG00000017391	-	92	82.328	ENSNLEG00000031018	-	99	89.399	Nomascus_leucogenys
ENSODEG00000017391	-	99	86.348	ENSMEUG00000008427	HDLBP	88	86.348	Notamacropus_eugenii
ENSODEG00000017391	-	100	85.489	ENSOPRG00000011965	-	100	85.489	Ochotona_princeps
ENSODEG00000017391	-	100	74.490	ENSONIG00000019272	hdlbpa	99	74.490	Oreochromis_niloticus
ENSODEG00000017391	-	100	87.046	ENSOANG00000011759	-	100	87.046	Ornithorhynchus_anatinus
ENSODEG00000017391	-	100	90.300	ENSOCUG00000012667	HDLBP	100	90.300	Oryctolagus_cuniculus
ENSODEG00000017391	-	100	73.323	ENSORLG00000002226	hdlbpa	99	73.323	Oryzias_latipes
ENSODEG00000017391	-	100	73.635	ENSORLG00020007905	hdlbpa	99	73.635	Oryzias_latipes_hni
ENSODEG00000017391	-	100	73.479	ENSORLG00015004126	hdlbpa	99	73.479	Oryzias_latipes_hsok
ENSODEG00000017391	-	100	71.753	ENSOMEG00000000247	hdlbpa	99	75.467	Oryzias_melastigma
ENSODEG00000017391	-	100	90.142	ENSOGAG00000000738	HDLBP	100	90.142	Otolemur_garnettii
ENSODEG00000017391	-	100	88.078	ENSOARG00000017870	HDLBP	100	88.078	Ovis_aries
ENSODEG00000017391	-	100	90.615	ENSPPAG00000023318	HDLBP	100	90.615	Pan_paniscus
ENSODEG00000017391	-	100	90.300	ENSPPRG00000010215	HDLBP	100	90.300	Panthera_pardus
ENSODEG00000017391	-	85	92.695	ENSPTIG00000009328	HDLBP	97	92.695	Panthera_tigris_altaica
ENSODEG00000017391	-	100	90.773	ENSPTRG00000013121	HDLBP	100	90.773	Pan_troglodytes
ENSODEG00000017391	-	100	90.615	ENSPANG00000011832	HDLBP	100	90.615	Papio_anubis
ENSODEG00000017391	-	100	74.254	ENSPKIG00000002392	hdlbpa	99	74.254	Paramormyrops_kingsleyae
ENSODEG00000017391	-	93	85.086	ENSPSIG00000010068	HDLBP	100	85.086	Pelodiscus_sinensis
ENSODEG00000017391	-	100	64.068	ENSPMGG00000002102	hdlbpa	99	64.068	Periophthalmus_magnuspinnatus
ENSODEG00000017391	-	100	91.246	ENSPEMG00000017704	Hdlbp	100	91.246	Peromyscus_maniculatus_bairdii
ENSODEG00000017391	-	99	86.846	ENSPCIG00000015375	HDLBP	94	86.846	Phascolarctos_cinereus
ENSODEG00000017391	-	100	73.684	ENSPFOG00000000236	hdlbpa	99	73.684	Poecilia_formosa
ENSODEG00000017391	-	95	74.274	ENSPLAG00000006033	hdlbpa	100	74.274	Poecilia_latipinna
ENSODEG00000017391	-	100	73.684	ENSPMEG00000006627	hdlbpa	99	73.684	Poecilia_mexicana
ENSODEG00000017391	-	100	55.882	ENSPREG00000014450	hdlbpa	99	55.882	Poecilia_reticulata
ENSODEG00000017391	-	100	90.615	ENSPPYG00000013351	HDLBP	100	90.615	Pongo_abelii
ENSODEG00000017391	-	100	88.372	ENSPCAG00000011136	HDLBP	79	88.372	Procavia_capensis
ENSODEG00000017391	-	100	76.930	ENSPCOG00000021622	HDLBP	92	86.146	Propithecus_coquereli
ENSODEG00000017391	-	100	89.012	ENSPVAG00000000555	HDLBP	100	89.012	Pteropus_vampyrus
ENSODEG00000017391	-	100	74.647	ENSPNYG00000020753	hdlbpa	99	74.647	Pundamilia_nyererei
ENSODEG00000017391	-	100	72.484	ENSPNAG00000029610	hdlbpa	99	72.484	Pygocentrus_nattereri
ENSODEG00000017391	-	100	91.246	ENSRNOG00000031479	Hdlbp	100	91.246	Rattus_norvegicus
ENSODEG00000017391	-	93	42.683	ENSRNOG00000042823	RGD1561230	97	42.683	Rattus_norvegicus
ENSODEG00000017391	-	88	43.115	ENSRNOG00000028847	AABR07040251.1	100	43.115	Rattus_norvegicus
ENSODEG00000017391	-	94	45.882	ENSRNOG00000031294	RGD1563104	94	45.798	Rattus_norvegicus
ENSODEG00000017391	-	100	90.615	ENSRBIG00000041381	HDLBP	100	90.615	Rhinopithecus_bieti
ENSODEG00000017391	-	100	90.615	ENSRROG00000034263	HDLBP	100	90.615	Rhinopithecus_roxellana
ENSODEG00000017391	-	99	90.292	ENSSBOG00000029714	-	96	92.562	Saimiri_boliviensis_boliviensis
ENSODEG00000017391	-	92	79.011	ENSSBOG00000033067	-	96	79.011	Saimiri_boliviensis_boliviensis
ENSODEG00000017391	-	100	87.461	ENSSHAG00000012422	HDLBP	100	87.461	Sarcophilus_harrisii
ENSODEG00000017391	-	100	75.334	ENSSFOG00015018627	hdlbp	99	75.334	Scleropages_formosus
ENSODEG00000017391	-	100	74.669	ENSSMAG00000002382	hdlbpa	99	74.591	Scophthalmus_maximus
ENSODEG00000017391	-	100	74.451	ENSSDUG00000022258	hdlbpa	99	74.451	Seriola_dumerili
ENSODEG00000017391	-	100	74.373	ENSSLDG00000004437	hdlbpa	99	74.373	Seriola_lalandi_dorsalis
ENSODEG00000017391	-	100	72.885	ENSSARG00000012639	HDLBP	100	72.885	Sorex_araneus
ENSODEG00000017391	-	100	84.543	ENSSPUG00000009182	HDLBP	100	84.543	Sphenodon_punctatus
ENSODEG00000017391	-	100	74.039	ENSSPAG00000009145	hdlbpa	99	74.118	Stegastes_partitus
ENSODEG00000017391	-	100	89.432	ENSSSCG00000016379	HDLBP	100	89.465	Sus_scrofa
ENSODEG00000017391	-	95	84.378	ENSTGUG00000006189	HDLBP	100	84.565	Taeniopygia_guttata
ENSODEG00000017391	-	100	73.386	ENSTRUG00000012148	hdlbpa	99	73.386	Takifugu_rubripes
ENSODEG00000017391	-	99	73.986	ENSTNIG00000004185	hdlbpa	100	73.986	Tetraodon_nigroviridis
ENSODEG00000017391	-	94	71.970	ENSTBEG00000001860	HDLBP	95	71.970	Tupaia_belangeri
ENSODEG00000017391	-	100	91.334	ENSTTRG00000015251	HDLBP	77	91.334	Tursiops_truncatus
ENSODEG00000017391	-	100	90.142	ENSUAMG00000018383	HDLBP	100	90.142	Ursus_americanus
ENSODEG00000017391	-	100	90.063	ENSUMAG00000010539	HDLBP	100	90.063	Ursus_maritimus
ENSODEG00000017391	-	92	58.250	ENSVPAG00000003112	HDLBP	93	58.222	Vicugna_pacos
ENSODEG00000017391	-	95	90.075	ENSVVUG00000022797	HDLBP	99	90.250	Vulpes_vulpes
ENSODEG00000017391	-	100	78.931	ENSXETG00000012164	hdlbp	99	78.931	Xenopus_tropicalis
ENSODEG00000017391	-	100	73.858	ENSXCOG00000005943	hdlbpa	99	73.858	Xiphophorus_couchianus
ENSODEG00000017391	-	100	73.495	ENSXMAG00000003787	hdlbpa	99	73.495	Xiphophorus_maculatus