EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000017434 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: polyadenylate-binding protein 4 pseudogene
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 1510 bases
Position: chrJH651516.1:39435292-39436801
Accession: 105742924
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000023825	PABP	PF00658.18	2e-31	1	1
ENSODEP00000023823	PABP	PF00658.18	4.4e-31	1	1
ENSODEP00000023823	RRM_1	PF00076.22	3.1e-45	1	2
ENSODEP00000023823	RRM_1	PF00076.22	3.1e-45	2	2
ENSODEP00000023824	RRM_1	PF00076.22	2.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000024095	-	1425	-	ENSODEP00000023823	474 (aa)	-	-
ENSODET00000024097	-	702	-	ENSODEP00000023825	233 (aa)	-	-
ENSODET00000024096	-	804	-	ENSODEP00000023824	267 (aa)	-	-

Gene Model

Click here to download ENSODEG00000017434's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000017434's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000017434	-	94	80.631	ENSODEG00000013825	-	96	80.631
ENSODEG00000017434	-	100	89.733	ENSODEG00000006592	-	99	89.733
ENSODEG00000017434	-	82	66.063	ENSODEG00000013269	-	89	72.202
ENSODEG00000017434	-	98	66.949	ENSODEG00000003229	PABPC1	93	67.161
ENSODEG00000017434	-	97	51.410	ENSODEG00000015482	PABPC1L	97	50.542

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000017434	-	100	89.206	ENSG00000090621	PABPC4	99	97.015	Homo_sapiens
ENSODEG00000017434	-	99	73.941	ENSAPOG00000001161	pabpc4	99	73.554	Acanthochromis_polyacanthus
ENSODEG00000017434	-	100	89.409	ENSAMEG00000011535	-	99	89.528	Ailuropoda_melanoleuca
ENSODEG00000017434	-	99	51.923	ENSAMEG00000015083	-	70	51.496	Ailuropoda_melanoleuca
ENSODEG00000017434	-	100	73.499	ENSACIG00000023343	pabpc4	99	74.327	Amphilophus_citrinellus
ENSODEG00000017434	-	99	73.941	ENSAOCG00000021529	pabpc4	90	87.179	Amphiprion_ocellaris
ENSODEG00000017434	-	99	73.941	ENSAPEG00000019196	pabpc4	99	73.913	Amphiprion_percula
ENSODEG00000017434	-	99	72.939	ENSATEG00000007402	pabpc4	99	72.840	Anabas_testudineus
ENSODEG00000017434	-	99	81.607	ENSAPLG00000009729	-	99	80.973	Anas_platyrhynchos
ENSODEG00000017434	-	99	81.395	ENSACAG00000002544	PABPC4	96	80.761	Anolis_carolinensis
ENSODEG00000017434	-	100	89.002	ENSANAG00000025079	PABPC4	99	89.117	Aotus_nancymaae
ENSODEG00000017434	-	100	73.292	ENSACLG00000019558	pabpc4	99	73.913	Astatotilapia_calliptera
ENSODEG00000017434	-	99	67.585	ENSAMXG00000018779	pabpc4	98	68.499	Astyanax_mexicanus
ENSODEG00000017434	-	100	86.475	ENSBTAG00000017125	PABPC4	99	86.475	Bos_taurus
ENSODEG00000017434	-	100	89.002	ENSCJAG00000002512	-	99	89.117	Callithrix_jacchus
ENSODEG00000017434	-	90	82.661	ENSCJAG00000045953	-	95	82.661	Callithrix_jacchus
ENSODEG00000017434	-	100	89.409	ENSCAFG00000003081	PABPC4	99	88.000	Canis_familiaris
ENSODEG00000017434	-	100	89.409	ENSCAFG00020004161	PABPC4	99	89.528	Canis_lupus_dingo
ENSODEG00000017434	-	100	69.023	ENSCHIG00000023385	-	98	69.023	Capra_hircus
ENSODEG00000017434	-	100	89.002	ENSCHIG00000019398	-	99	89.117	Capra_hircus
ENSODEG00000017434	-	100	89.733	ENSTSYG00000006532	PABPC4	99	89.733	Carlito_syrichta
ENSODEG00000017434	-	100	89.002	ENSCAPG00000015984	PABPC4	99	89.117	Cavia_aperea
ENSODEG00000017434	-	100	89.002	ENSCPOG00000009552	PABPC4	99	89.117	Cavia_porcellus
ENSODEG00000017434	-	100	89.002	ENSCCAG00000037306	PABPC4	99	89.117	Cebus_capucinus
ENSODEG00000017434	-	100	89.409	ENSCATG00000042164	PABPC4	99	89.528	Cercocebus_atys
ENSODEG00000017434	-	100	90.020	ENSCLAG00000011899	PABPC4	99	89.938	Chinchilla_lanigera
ENSODEG00000017434	-	100	89.409	ENSCSAG00000001135	PABPC4	99	89.528	Chlorocebus_sabaeus
ENSODEG00000017434	-	79	95.203	ENSCHOG00000005327	PABPC4	81	95.203	Choloepus_hoffmanni
ENSODEG00000017434	-	99	81.184	ENSCPBG00000001038	PABPC4	99	80.753	Chrysemys_picta_bellii
ENSODEG00000017434	-	100	89.409	ENSCANG00000034177	PABPC4	99	89.528	Colobus_angolensis_palliatus
ENSODEG00000017434	-	98	88.382	ENSCGRG00001018166	Pabpc4	99	88.163	Cricetulus_griseus_chok1gshd
ENSODEG00000017434	-	98	85.270	ENSCGRG00000009777	Pabpc4	100	85.102	Cricetulus_griseus_crigri
ENSODEG00000017434	-	100	72.878	ENSCSEG00000000130	pabpc4	99	73.499	Cynoglossus_semilaevis
ENSODEG00000017434	-	100	73.805	ENSCVAG00000019246	pabpc4	99	74.220	Cyprinodon_variegatus
ENSODEG00000017434	-	99	74.841	ENSDARG00000059259	pabpc4	99	75.111	Danio_rerio
ENSODEG00000017434	-	100	87.764	ENSDNOG00000018444	-	95	89.540	Dasypus_novemcinctus
ENSODEG00000017434	-	79	58.511	ENSDNOG00000042887	-	96	59.067	Dasypus_novemcinctus
ENSODEG00000017434	-	81	60.104	ENSDNOG00000046918	-	100	52.500	Dasypus_novemcinctus
ENSODEG00000017434	-	100	86.242	ENSDORG00000011581	Pabpc4	99	86.242	Dipodomys_ordii
ENSODEG00000017434	-	99	62.313	ENSETEG00000009172	-	99	62.368	Echinops_telfairi
ENSODEG00000017434	-	100	88.008	ENSETEG00000018453	-	75	88.115	Echinops_telfairi
ENSODEG00000017434	-	96	65.161	ENSEBUG00000013782	pabpc4	98	65.063	Eptatretus_burgeri
ENSODEG00000017434	-	98	65.745	ENSEBUG00000000992	pabpc4	98	65.319	Eptatretus_burgeri
ENSODEG00000017434	-	100	89.409	ENSEASG00005014119	PABPC4	99	89.528	Equus_asinus_asinus
ENSODEG00000017434	-	100	89.409	ENSECAG00000009396	PABPC4	99	89.528	Equus_caballus
ENSODEG00000017434	-	97	85.177	ENSEEUG00000002962	PABPC4	99	85.832	Erinaceus_europaeus
ENSODEG00000017434	-	99	75.106	ENSELUG00000003195	pabpc4	98	75.738	Esox_lucius
ENSODEG00000017434	-	100	89.613	ENSFCAG00000015254	-	99	89.733	Felis_catus
ENSODEG00000017434	-	99	79.915	ENSFALG00000000543	PABPC4	99	79.704	Ficedula_albicollis
ENSODEG00000017434	-	100	89.613	ENSFDAG00000020016	-	99	89.938	Fukomys_damarensis
ENSODEG00000017434	-	88	78.723	ENSFDAG00000010581	-	93	60.960	Fukomys_damarensis
ENSODEG00000017434	-	100	73.237	ENSFHEG00000007548	pabpc4	92	87.850	Fundulus_heteroclitus
ENSODEG00000017434	-	99	73.729	ENSGMOG00000019025	pabpc4	97	74.153	Gadus_morhua
ENSODEG00000017434	-	99	80.973	ENSGALG00000003800	PABPC4	99	80.761	Gallus_gallus
ENSODEG00000017434	-	100	74.004	ENSGAFG00000018195	pabpc4	99	86.232	Gambusia_affinis
ENSODEG00000017434	-	100	72.671	ENSGACG00000007179	pabpc4	99	73.292	Gasterosteus_aculeatus
ENSODEG00000017434	-	99	81.818	ENSGAGG00000001888	PABPC4	99	81.607	Gopherus_agassizii
ENSODEG00000017434	-	100	89.206	ENSGGOG00000004002	PABPC4	99	89.322	Gorilla_gorilla
ENSODEG00000017434	-	80	79.688	ENSGGOG00000039139	-	89	79.688	Gorilla_gorilla
ENSODEG00000017434	-	100	73.499	ENSHBUG00000020206	pabpc4	99	74.120	Haplochromis_burtoni
ENSODEG00000017434	-	100	89.613	ENSHGLG00000011162	PABPC4	99	89.733	Heterocephalus_glaber_female
ENSODEG00000017434	-	100	87.764	ENSHGLG00100001580	PABPC4	99	88.025	Heterocephalus_glaber_male
ENSODEG00000017434	-	99	73.461	ENSHCOG00000012694	pabpc4	97	74.098	Hippocampus_comes
ENSODEG00000017434	-	97	73.707	ENSIPUG00000016620	pabpc4	99	73.333	Ictalurus_punctatus
ENSODEG00000017434	-	100	86.354	ENSSTOG00000010416	PABPC4	99	86.448	Ictidomys_tridecemlineatus
ENSODEG00000017434	-	94	91.892	ENSJJAG00000007781	Pabpc4	99	84.362	Jaculus_jaculus
ENSODEG00000017434	-	99	73.431	ENSKMAG00000013597	pabpc4	98	74.059	Kryptolebias_marmoratus
ENSODEG00000017434	-	100	72.727	ENSLBEG00000013654	pabpc4	99	73.554	Labrus_bergylta
ENSODEG00000017434	-	99	77.149	ENSLACG00000011907	PABPC4	99	76.939	Latimeria_chalumnae
ENSODEG00000017434	-	100	75.157	ENSLOCG00000001877	pabpc4	99	76.681	Lepisosteus_oculatus
ENSODEG00000017434	-	100	89.613	ENSLAFG00000000151	PABPC4	99	89.528	Loxodonta_africana
ENSODEG00000017434	-	100	89.409	ENSMFAG00000041481	PABPC4	99	89.528	Macaca_fascicularis
ENSODEG00000017434	-	100	89.409	ENSMMUG00000007497	PABPC4	99	89.528	Macaca_mulatta
ENSODEG00000017434	-	100	89.409	ENSMNEG00000043054	PABPC4	99	89.528	Macaca_nemestrina
ENSODEG00000017434	-	100	89.409	ENSMLEG00000040716	PABPC4	99	89.528	Mandrillus_leucophaeus
ENSODEG00000017434	-	99	73.517	ENSMAMG00000010025	pabpc4	98	73.486	Mastacembelus_armatus
ENSODEG00000017434	-	100	73.085	ENSMZEG00005006141	pabpc4	99	73.706	Maylandia_zebra
ENSODEG00000017434	-	99	79.710	ENSMGAG00000005408	PABPC4	100	79.498	Meleagris_gallopavo
ENSODEG00000017434	-	65	98.958	ENSMAUG00000019763	-	65	94.118	Mesocricetus_auratus
ENSODEG00000017434	-	78	88.942	ENSMAUG00000001295	-	97	88.942	Mesocricetus_auratus
ENSODEG00000017434	-	87	95.708	ENSMICG00000036729	-	97	79.455	Microcebus_murinus
ENSODEG00000017434	-	89	96.154	ENSMICG00000016633	-	97	95.319	Microcebus_murinus
ENSODEG00000017434	-	99	88.843	ENSMOCG00000006763	Pabpc4	99	88.090	Microtus_ochrogaster
ENSODEG00000017434	-	100	71.190	ENSMMOG00000002363	pabpc4	99	72.292	Mola_mola
ENSODEG00000017434	-	50	67.742	ENSMODG00000018051	-	89	68.657	Monodelphis_domestica
ENSODEG00000017434	-	97	80.169	ENSMODG00000017657	-	99	79.835	Monodelphis_domestica
ENSODEG00000017434	-	99	72.363	ENSMALG00000011017	pabpc4	99	73.597	Monopterus_albus
ENSODEG00000017434	-	100	88.296	MGP_CAROLIEiJ_G0026435	-	99	88.296	Mus_caroli
ENSODEG00000017434	-	100	72.967	MGP_CAROLIEiJ_G0024864	-	96	72.951	Mus_caroli
ENSODEG00000017434	-	100	87.984	ENSMUSG00000011257	Pabpc4	99	88.090	Mus_musculus
ENSODEG00000017434	-	100	87.576	MGP_PahariEiJ_G0028765	Pabpc4	99	87.680	Mus_pahari
ENSODEG00000017434	-	100	88.187	MGP_SPRETEiJ_G0027415	Pabpc4	99	88.296	Mus_spretus
ENSODEG00000017434	-	95	49.336	ENSMPUG00000006836	-	72	48.780	Mustela_putorius_furo
ENSODEG00000017434	-	100	89.613	ENSMPUG00000014414	-	99	89.733	Mustela_putorius_furo
ENSODEG00000017434	-	100	84.599	ENSMLUG00000012068	PABPC4	99	85.232	Myotis_lucifugus
ENSODEG00000017434	-	100	86.354	ENSNGAG00000018292	Pabpc4	99	86.242	Nannospalax_galili
ENSODEG00000017434	-	63	89.286	ENSNBRG00000010047	-	72	89.286	Neolamprologus_brichardi
ENSODEG00000017434	-	53	37.864	ENSNBRG00000009708	pabpc4	97	79.545	Neolamprologus_brichardi
ENSODEG00000017434	-	100	87.764	ENSNLEG00000011928	PABPC4	99	87.789	Nomascus_leucogenys
ENSODEG00000017434	-	84	94.667	ENSOPRG00000011984	PABPC4	85	95.238	Ochotona_princeps
ENSODEG00000017434	-	100	73.706	ENSONIG00000008176	pabpc4	99	74.327	Oreochromis_niloticus
ENSODEG00000017434	-	99	80.802	ENSOANG00000010001	PABPC4	99	80.380	Ornithorhynchus_anatinus
ENSODEG00000017434	-	89	94.937	ENSOCUG00000000562	PABPC4	88	88.889	Oryctolagus_cuniculus
ENSODEG00000017434	-	99	86.093	ENSORLG00000017479	pabpc4	98	86.093	Oryzias_latipes
ENSODEG00000017434	-	99	86.093	ENSORLG00020018644	pabpc4	98	86.093	Oryzias_latipes_hni
ENSODEG00000017434	-	99	86.093	ENSORLG00015015042	pabpc4	98	86.093	Oryzias_latipes_hsok
ENSODEG00000017434	-	99	72.881	ENSOMEG00000014410	pabpc4	98	81.579	Oryzias_melastigma
ENSODEG00000017434	-	100	85.830	ENSOGAG00000004067	PABPC4	99	86.122	Otolemur_garnettii
ENSODEG00000017434	-	100	89.002	ENSOARG00000020060	PABPC4	99	89.117	Ovis_aries
ENSODEG00000017434	-	100	89.206	ENSPPAG00000043625	PABPC4	99	89.322	Pan_paniscus
ENSODEG00000017434	-	100	89.613	ENSPPRG00000024727	PABPC4	99	89.733	Panthera_pardus
ENSODEG00000017434	-	100	89.613	ENSPTIG00000005829	PABPC4	99	89.733	Panthera_tigris_altaica
ENSODEG00000017434	-	100	89.206	ENSPTRG00000000573	PABPC4	99	89.322	Pan_troglodytes
ENSODEG00000017434	-	100	89.613	ENSPANG00000009484	PABPC4	99	89.733	Papio_anubis
ENSODEG00000017434	-	99	74.737	ENSPKIG00000025356	pabpc4	98	76.211	Paramormyrops_kingsleyae
ENSODEG00000017434	-	99	81.184	ENSPSIG00000016892	PABPC4	99	80.753	Pelodiscus_sinensis
ENSODEG00000017434	-	100	72.803	ENSPMGG00000009073	pabpc4	98	72.594	Periophthalmus_magnuspinnatus
ENSODEG00000017434	-	100	88.090	ENSPEMG00000023569	-	99	88.090	Peromyscus_maniculatus_bairdii
ENSODEG00000017434	-	100	80.493	ENSPEMG00000024193	-	99	80.493	Peromyscus_maniculatus_bairdii
ENSODEG00000017434	-	91	62.992	ENSPMAG00000002836	pabpc4	99	59.620	Petromyzon_marinus
ENSODEG00000017434	-	96	64.819	ENSPMAG00000007885	pabpc4	99	64.596	Petromyzon_marinus
ENSODEG00000017434	-	97	81.128	ENSPCIG00000020674	PABPC4	99	88.971	Phascolarctos_cinereus
ENSODEG00000017434	-	100	72.407	ENSPFOG00000002682	pabpc4	99	74.066	Poecilia_formosa
ENSODEG00000017434	-	100	72.407	ENSPLAG00000010112	pabpc4	99	74.066	Poecilia_latipinna
ENSODEG00000017434	-	99	72.881	ENSPMEG00000019739	pabpc4	99	74.066	Poecilia_mexicana
ENSODEG00000017434	-	100	73.029	ENSPREG00000001589	pabpc4	99	74.066	Poecilia_reticulata
ENSODEG00000017434	-	100	89.206	ENSPPYG00000001506	PABPC4	99	89.322	Pongo_abelii
ENSODEG00000017434	-	94	92.793	ENSPCAG00000003341	PABPC4	99	82.752	Procavia_capensis
ENSODEG00000017434	-	100	81.988	ENSPCOG00000025882	-	95	82.911	Propithecus_coquereli
ENSODEG00000017434	-	100	89.431	ENSPCOG00000023725	-	99	89.549	Propithecus_coquereli
ENSODEG00000017434	-	100	89.528	ENSPVAG00000002187	PABPC4	99	89.528	Pteropus_vampyrus
ENSODEG00000017434	-	100	73.292	ENSPNYG00000006134	pabpc4	99	73.913	Pundamilia_nyererei
ENSODEG00000017434	-	100	73.499	ENSPNAG00000024355	pabpc4	99	74.530	Pygocentrus_nattereri
ENSODEG00000017434	-	100	83.778	ENSRNOG00000028592	AABR07035074.1	99	83.778	Rattus_norvegicus
ENSODEG00000017434	-	100	85.626	ENSRNOG00000015642	Pabpc4	99	85.626	Rattus_norvegicus
ENSODEG00000017434	-	100	89.409	ENSRBIG00000039761	PABPC4	99	89.528	Rhinopithecus_bieti
ENSODEG00000017434	-	100	89.409	ENSRROG00000033355	PABPC4	99	89.528	Rhinopithecus_roxellana
ENSODEG00000017434	-	100	89.206	ENSSBOG00000026193	PABPC4	99	89.322	Saimiri_boliviensis_boliviensis
ENSODEG00000017434	-	97	81.128	ENSSHAG00000018139	PABPC4	99	80.761	Sarcophilus_harrisii
ENSODEG00000017434	-	99	76.261	ENSSFOG00015023514	pabpc4	99	76.261	Scleropages_formosus
ENSODEG00000017434	-	99	73.263	ENSSMAG00000009007	pabpc4	98	73.684	Scophthalmus_maximus
ENSODEG00000017434	-	99	72.458	ENSSDUG00000012683	pabpc4	99	73.085	Seriola_dumerili
ENSODEG00000017434	-	99	72.458	ENSSLDG00000013025	pabpc4	99	73.085	Seriola_lalandi_dorsalis
ENSODEG00000017434	-	100	88.391	ENSSARG00000000310	PABPC4	94	88.706	Sorex_araneus
ENSODEG00000017434	-	99	80.973	ENSSPUG00000003204	PABPC4	99	80.761	Sphenodon_punctatus
ENSODEG00000017434	-	99	86.447	ENSSPAG00000009252	pabpc4	96	86.726	Stegastes_partitus
ENSODEG00000017434	-	98	52.239	ENSSSCG00000036170	-	87	54.400	Sus_scrofa
ENSODEG00000017434	-	100	89.409	ENSSSCG00000003660	-	99	89.733	Sus_scrofa
ENSODEG00000017434	-	99	77.172	ENSTGUG00000001266	PABPC4	99	77.664	Taeniopygia_guttata
ENSODEG00000017434	-	100	71.608	ENSTRUG00000005907	pabpc4	98	72.199	Takifugu_rubripes
ENSODEG00000017434	-	100	67.992	ENSTNIG00000016902	pabpc4	85	87.243	Tetraodon_nigroviridis
ENSODEG00000017434	-	94	91.892	ENSTBEG00000009035	PABPC4	89	82.136	Tupaia_belangeri
ENSODEG00000017434	-	94	92.342	ENSTTRG00000014340	PABPC4	99	74.521	Tursiops_truncatus
ENSODEG00000017434	-	100	89.409	ENSUAMG00000000303	PABPC4	99	89.528	Ursus_americanus
ENSODEG00000017434	-	100	94.096	ENSUMAG00000019585	PABPC4	98	97.170	Ursus_maritimus
ENSODEG00000017434	-	77	95.181	ENSVPAG00000010041	PABPC4	59	95.181	Vicugna_pacos
ENSODEG00000017434	-	100	89.409	ENSVVUG00000005215	PABPC4	99	89.528	Vulpes_vulpes
ENSODEG00000017434	-	99	75.053	ENSXETG00000010946	pabpc4	99	75.264	Xenopus_tropicalis
ENSODEG00000017434	-	100	73.585	ENSXCOG00000013190	pabpc4	96	93.277	Xiphophorus_couchianus
ENSODEG00000017434	-	100	72.822	ENSXMAG00000019007	pabpc4	99	73.859	Xiphophorus_maculatus