EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000017681 (Gene tree)
Gene ID: 101573369
Gene Symbol: VARS
Alias: -
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 10839 bases
Position: chrJH651520.1:32782404-32793242
Accession: 101573369
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000024160	tRNA-synt_1g	PF09334.11	3.9e-11	1	1
ENSODEP00000024159	tRNA-synt_1g	PF09334.11	4e-11	1	1
ENSODEP00000024158	tRNA-synt_1g	PF09334.11	4.1e-11	1	1
ENSODEP00000024160	Anticodon_1	PF08264.13	1.9e-34	1	1
ENSODEP00000024159	Anticodon_1	PF08264.13	1.9e-34	1	1
ENSODEP00000024158	Anticodon_1	PF08264.13	1.9e-34	1	1
ENSODEP00000024160	tRNA-synt_1	PF00133.22	4.5e-203	1	1
ENSODEP00000024159	tRNA-synt_1	PF00133.22	4.5e-203	1	1
ENSODEP00000024158	tRNA-synt_1	PF00133.22	1.9e-201	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000024433	VARS-202	3792	XM_004624298	ENSODEP00000024159	1263 (aa)	XP_004624355	UPI000333C49E
ENSODET00000024432	VARS-201	3807	-	ENSODEP00000024158	1268 (aa)	-	-
ENSODET00000024434	VARS-203	3783	-	ENSODEP00000024160	1260 (aa)	-	-

Gene Model

Click here to download ENSODEG00000017681's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000017681's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000017681	VARS	83	49.577	ENSODEG00000017965	VARS2	95	51.255

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000017681	VARS	100	90.585	ENSG00000204394	VARS	100	91.379	Homo_sapiens
ENSODEG00000017681	VARS	98	63.658	ENSAPOG00000020921	vars	99	63.658	Acanthochromis_polyacanthus
ENSODEG00000017681	VARS	98	63.658	ENSAPOG00000020691	vars	99	63.658	Acanthochromis_polyacanthus
ENSODEG00000017681	VARS	100	90.751	ENSAMEG00000006417	VARS	100	91.067	Ailuropoda_melanoleuca
ENSODEG00000017681	VARS	100	64.595	ENSACIG00000013752	vars	100	64.673	Amphilophus_citrinellus
ENSODEG00000017681	VARS	100	63.757	ENSAOCG00000002447	vars	100	63.344	Amphiprion_ocellaris
ENSODEG00000017681	VARS	100	63.679	ENSAPEG00000010638	vars	99	63.757	Amphiprion_percula
ENSODEG00000017681	VARS	100	63.830	ENSATEG00000020219	vars	100	63.615	Anabas_testudineus
ENSODEG00000017681	VARS	90	69.792	ENSACAG00000029133	-	99	69.531	Anolis_carolinensis
ENSODEG00000017681	VARS	100	90.665	ENSANAG00000015453	VARS	100	91.218	Aotus_nancymaae
ENSODEG00000017681	VARS	100	63.686	ENSACLG00000025699	vars	97	63.764	Astatotilapia_calliptera
ENSODEG00000017681	VARS	94	65.858	ENSAMXG00000017716	vars	95	65.717	Astyanax_mexicanus
ENSODEG00000017681	VARS	100	90.506	ENSBTAG00000005631	VARS	100	91.060	Bos_taurus
ENSODEG00000017681	VARS	100	90.269	ENSCJAG00000002604	VARS	100	90.823	Callithrix_jacchus
ENSODEG00000017681	VARS	100	89.953	ENSCAFG00000000636	VARS	100	90.269	Canis_familiaris
ENSODEG00000017681	VARS	94	90.541	ENSCAFG00020020790	VARS	96	90.878	Canis_lupus_dingo
ENSODEG00000017681	VARS	100	90.348	ENSCHIG00000011008	VARS	100	90.902	Capra_hircus
ENSODEG00000017681	VARS	100	90.744	ENSTSYG00000001567	VARS	100	91.297	Carlito_syrichta
ENSODEG00000017681	VARS	91	92.301	ENSCAPG00000013736	VARS	99	92.301	Cavia_aperea
ENSODEG00000017681	VARS	100	93.196	ENSCPOG00000000870	VARS	100	93.196	Cavia_porcellus
ENSODEG00000017681	VARS	100	91.060	ENSCCAG00000035656	VARS	100	91.294	Cebus_capucinus
ENSODEG00000017681	VARS	100	91.456	ENSCATG00000022394	VARS	100	91.456	Cercocebus_atys
ENSODEG00000017681	VARS	90	91.041	ENSCLAG00000009470	VARS	95	91.041	Chinchilla_lanigera
ENSODEG00000017681	VARS	100	91.377	ENSCSAG00000008784	VARS	100	91.377	Chlorocebus_sabaeus
ENSODEG00000017681	VARS	77	73.744	ENSCPBG00000007943	VARS	96	73.614	Chrysemys_picta_bellii
ENSODEG00000017681	VARS	100	91.456	ENSCANG00000033570	VARS	100	91.456	Colobus_angolensis_palliatus
ENSODEG00000017681	VARS	100	90.427	ENSCGRG00001005686	Vars	100	90.981	Cricetulus_griseus_chok1gshd
ENSODEG00000017681	VARS	92	85.427	ENSCGRG00000013352	Vars	78	86.013	Cricetulus_griseus_crigri
ENSODEG00000017681	VARS	100	64.025	ENSCSEG00000019652	vars	100	64.105	Cynoglossus_semilaevis
ENSODEG00000017681	VARS	100	64.463	ENSCVAG00000022398	vars	100	64.541	Cyprinodon_variegatus
ENSODEG00000017681	VARS	100	64.230	ENSDARG00000044575	vars	100	64.386	Danio_rerio
ENSODEG00000017681	VARS	84	90.687	ENSDORG00000016433	Vars	95	90.687	Dipodomys_ordii
ENSODEG00000017681	VARS	68	86.413	ENSETEG00000003824	VARS	76	86.413	Echinops_telfairi
ENSODEG00000017681	VARS	57	62.500	ENSEBUG00000004637	vars	100	62.775	Eptatretus_burgeri
ENSODEG00000017681	VARS	51	71.506	ENSEBUG00000007086	vars	84	70.332	Eptatretus_burgeri
ENSODEG00000017681	VARS	100	90.665	ENSEASG00005015673	VARS	100	91.218	Equus_asinus_asinus
ENSODEG00000017681	VARS	100	90.435	ENSECAG00000014620	VARS	100	90.909	Equus_caballus
ENSODEG00000017681	VARS	78	88.235	ENSEEUG00000004116	VARS	80	88.235	Erinaceus_europaeus
ENSODEG00000017681	VARS	100	63.854	ENSELUG00000006550	vars	97	64.087	Esox_lucius
ENSODEG00000017681	VARS	100	90.032	ENSFCAG00000004510	VARS	100	90.427	Felis_catus
ENSODEG00000017681	VARS	82	93.918	ENSFDAG00000011401	VARS	100	93.918	Fukomys_damarensis
ENSODEG00000017681	VARS	100	64.450	ENSFHEG00000010672	vars	100	64.774	Fundulus_heteroclitus
ENSODEG00000017681	VARS	93	64.867	ENSGMOG00000014908	vars	97	65.557	Gadus_morhua
ENSODEG00000017681	VARS	100	64.679	ENSGAFG00000021630	vars	100	64.679	Gambusia_affinis
ENSODEG00000017681	VARS	93	64.883	ENSGACG00000009601	vars	97	65.494	Gasterosteus_aculeatus
ENSODEG00000017681	VARS	50	64.038	ENSGAGG00000006508	-	91	62.720	Gopherus_agassizii
ENSODEG00000017681	VARS	100	91.377	ENSGGOG00000011364	VARS	100	91.377	Gorilla_gorilla
ENSODEG00000017681	VARS	100	63.608	ENSHBUG00000017151	vars	97	63.686	Haplochromis_burtoni
ENSODEG00000017681	VARS	100	91.845	ENSHGLG00000011646	VARS	100	91.845	Heterocephalus_glaber_female
ENSODEG00000017681	VARS	93	84.167	ENSHGLG00100018062	VARS	99	84.255	Heterocephalus_glaber_male
ENSODEG00000017681	VARS	99	64.041	ENSHCOG00000012198	vars	99	64.041	Hippocampus_comes
ENSODEG00000017681	VARS	100	64.145	ENSIPUG00000005218	vars	100	64.202	Ictalurus_punctatus
ENSODEG00000017681	VARS	100	92.174	ENSSTOG00000013112	VARS	100	92.174	Ictidomys_tridecemlineatus
ENSODEG00000017681	VARS	100	89.707	ENSJJAG00000019749	-	100	89.707	Jaculus_jaculus
ENSODEG00000017681	VARS	100	71.101	ENSJJAG00000015343	-	100	73.732	Jaculus_jaculus
ENSODEG00000017681	VARS	100	64.184	ENSKMAG00000009455	vars	100	64.184	Kryptolebias_marmoratus
ENSODEG00000017681	VARS	100	63.362	ENSLBEG00000010341	vars	100	63.133	Labrus_bergylta
ENSODEG00000017681	VARS	94	61.627	ENSLACG00000015232	VARS	99	62.038	Latimeria_chalumnae
ENSODEG00000017681	VARS	100	65.439	ENSLOCG00000004240	vars	100	65.596	Lepisosteus_oculatus
ENSODEG00000017681	VARS	100	90.103	ENSLAFG00000023090	VARS	100	90.103	Loxodonta_africana
ENSODEG00000017681	VARS	100	91.456	ENSMFAG00000001032	VARS	100	91.456	Macaca_fascicularis
ENSODEG00000017681	VARS	100	91.456	ENSMMUG00000006828	VARS	100	91.456	Macaca_mulatta
ENSODEG00000017681	VARS	100	91.456	ENSMNEG00000042072	VARS	100	91.456	Macaca_nemestrina
ENSODEG00000017681	VARS	100	91.139	ENSMLEG00000039307	VARS	100	91.139	Mandrillus_leucophaeus
ENSODEG00000017681	VARS	100	63.934	ENSMAMG00000003949	vars	100	64.091	Mastacembelus_armatus
ENSODEG00000017681	VARS	100	63.608	ENSMZEG00005018327	vars	100	63.341	Maylandia_zebra
ENSODEG00000017681	VARS	100	90.665	ENSMAUG00000006715	Vars	100	91.218	Mesocricetus_auratus
ENSODEG00000017681	VARS	100	90.981	ENSMICG00000003548	VARS	100	92.040	Microcebus_murinus
ENSODEG00000017681	VARS	100	88.440	ENSMOCG00000015404	Vars	100	88.440	Microtus_ochrogaster
ENSODEG00000017681	VARS	100	63.415	ENSMMOG00000015801	vars	100	63.328	Mola_mola
ENSODEG00000017681	VARS	100	85.285	ENSMODG00000015204	-	100	85.285	Monodelphis_domestica
ENSODEG00000017681	VARS	99	63.721	ENSMALG00000022532	vars	99	63.792	Monopterus_albus
ENSODEG00000017681	VARS	100	91.766	MGP_CAROLIEiJ_G0021491	Vars	100	91.766	Mus_caroli
ENSODEG00000017681	VARS	100	91.766	ENSMUSG00000007029	Vars	100	91.766	Mus_musculus
ENSODEG00000017681	VARS	100	91.607	MGP_PahariEiJ_G0020486	Vars	100	91.607	Mus_pahari
ENSODEG00000017681	VARS	100	91.845	MGP_SPRETEiJ_G0022396	Vars	100	91.845	Mus_spretus
ENSODEG00000017681	VARS	100	91.060	ENSMPUG00000010821	VARS	100	91.377	Mustela_putorius_furo
ENSODEG00000017681	VARS	78	90.688	ENSMLUG00000013126	VARS	100	90.688	Myotis_lucifugus
ENSODEG00000017681	VARS	100	90.974	ENSNGAG00000012151	Vars	100	91.139	Nannospalax_galili
ENSODEG00000017681	VARS	100	63.375	ENSNBRG00000020520	vars	100	63.453	Neolamprologus_brichardi
ENSODEG00000017681	VARS	100	90.269	ENSNLEG00000006351	VARS	100	90.823	Nomascus_leucogenys
ENSODEG00000017681	VARS	100	82.120	ENSMEUG00000011378	VARS	100	82.120	Notamacropus_eugenii
ENSODEG00000017681	VARS	100	90.902	ENSOPRG00000003607	VARS	100	91.456	Ochotona_princeps
ENSODEG00000017681	VARS	100	64.078	ENSONIG00000013064	vars	99	67.015	Oreochromis_niloticus
ENSODEG00000017681	VARS	77	77.765	ENSOANG00000005400	VARS	98	77.408	Ornithorhynchus_anatinus
ENSODEG00000017681	VARS	100	89.303	ENSOCUG00000022463	VARS	100	89.328	Oryctolagus_cuniculus
ENSODEG00000017681	VARS	100	64.253	ENSORLG00000013063	vars	100	64.330	Oryzias_latipes
ENSODEG00000017681	VARS	100	64.779	ENSORLG00020003504	vars	100	64.779	Oryzias_latipes_hni
ENSODEG00000017681	VARS	100	64.601	ENSORLG00015009001	vars	100	64.601	Oryzias_latipes_hsok
ENSODEG00000017681	VARS	100	64.441	ENSOMEG00000015016	vars	100	64.441	Oryzias_melastigma
ENSODEG00000017681	VARS	100	90.585	ENSOGAG00000007515	VARS	100	90.585	Otolemur_garnettii
ENSODEG00000017681	VARS	100	90.981	ENSPPAG00000034012	VARS	100	91.535	Pan_paniscus
ENSODEG00000017681	VARS	100	90.269	ENSPPRG00000014855	VARS	100	90.665	Panthera_pardus
ENSODEG00000017681	VARS	85	90.512	ENSPTIG00000010462	VARS	94	90.994	Panthera_tigris_altaica
ENSODEG00000017681	VARS	100	91.060	ENSPTRG00000017985	VARS	100	91.614	Pan_troglodytes
ENSODEG00000017681	VARS	100	89.826	ENSPANG00000014565	VARS	100	89.826	Papio_anubis
ENSODEG00000017681	VARS	100	62.597	ENSPKIG00000016304	vars	100	62.674	Paramormyrops_kingsleyae
ENSODEG00000017681	VARS	100	65.561	ENSPMGG00000023909	vars	100	65.427	Periophthalmus_magnuspinnatus
ENSODEG00000017681	VARS	100	91.139	ENSPEMG00000006639	Vars	100	91.693	Peromyscus_maniculatus_bairdii
ENSODEG00000017681	VARS	100	85.127	ENSPCIG00000018553	VARS	100	85.127	Phascolarctos_cinereus
ENSODEG00000017681	VARS	100	64.953	ENSPFOG00000015690	vars	100	64.953	Poecilia_formosa
ENSODEG00000017681	VARS	100	65.354	ENSPLAG00000009590	vars	100	65.354	Poecilia_latipinna
ENSODEG00000017681	VARS	100	64.953	ENSPMEG00000004708	vars	100	64.953	Poecilia_mexicana
ENSODEG00000017681	VARS	100	63.415	ENSPREG00000013264	vars	100	63.336	Poecilia_reticulata
ENSODEG00000017681	VARS	100	89.715	ENSPPYG00000016460	VARS	100	89.715	Pongo_abelii
ENSODEG00000017681	VARS	86	89.587	ENSPCAG00000013565	VARS	86	89.587	Procavia_capensis
ENSODEG00000017681	VARS	100	90.909	ENSPCOG00000010942	VARS	100	91.383	Propithecus_coquereli
ENSODEG00000017681	VARS	100	87.579	ENSPVAG00000012403	VARS	100	87.579	Pteropus_vampyrus
ENSODEG00000017681	VARS	100	63.608	ENSPNYG00000022511	vars	100	63.686	Pundamilia_nyererei
ENSODEG00000017681	VARS	100	64.313	ENSPNAG00000020962	vars	100	64.496	Pygocentrus_nattereri
ENSODEG00000017681	VARS	100	91.772	ENSRNOG00000000867	Vars	100	91.772	Rattus_norvegicus
ENSODEG00000017681	VARS	100	91.456	ENSRBIG00000041669	VARS	100	91.456	Rhinopithecus_bieti
ENSODEG00000017681	VARS	100	91.456	ENSRROG00000045490	VARS	100	91.456	Rhinopithecus_roxellana
ENSODEG00000017681	VARS	100	90.427	ENSSBOG00000035402	VARS	100	90.981	Saimiri_boliviensis_boliviensis
ENSODEG00000017681	VARS	100	80.911	ENSSHAG00000006937	VARS	100	80.990	Sarcophilus_harrisii
ENSODEG00000017681	VARS	100	64.219	ENSSFOG00015014272	vars	100	64.219	Scleropages_formosus
ENSODEG00000017681	VARS	100	62.966	ENSSMAG00000009596	vars	99	63.121	Scophthalmus_maximus
ENSODEG00000017681	VARS	100	63.432	ENSSDUG00000014177	vars	100	63.509	Seriola_dumerili
ENSODEG00000017681	VARS	100	63.509	ENSSLDG00000025316	vars	100	63.587	Seriola_lalandi_dorsalis
ENSODEG00000017681	VARS	100	63.946	ENSSPAG00000017068	vars	100	64.069	Stegastes_partitus
ENSODEG00000017681	VARS	100	90.119	ENSSSCG00000038950	VARS	100	90.593	Sus_scrofa
ENSODEG00000017681	VARS	81	64.202	ENSTRUG00000012307	vars	96	64.078	Takifugu_rubripes
ENSODEG00000017681	VARS	100	64.364	ENSTNIG00000008011	vars	100	64.230	Tetraodon_nigroviridis
ENSODEG00000017681	VARS	54	95.506	ENSTBEG00000004728	-	60	95.506	Tupaia_belangeri
ENSODEG00000017681	VARS	100	83.465	ENSTTRG00000014128	VARS	100	83.465	Tursiops_truncatus
ENSODEG00000017681	VARS	100	86.953	ENSUAMG00000010424	VARS	100	87.264	Ursus_americanus
ENSODEG00000017681	VARS	93	89.365	ENSUMAG00000013486	VARS	98	89.524	Ursus_maritimus
ENSODEG00000017681	VARS	100	90.119	ENSVVUG00000021323	VARS	100	90.198	Vulpes_vulpes
ENSODEG00000017681	VARS	96	61.943	ENSXETG00000024076	vars	98	61.943	Xenopus_tropicalis
ENSODEG00000017681	VARS	100	64.471	ENSXCOG00000019172	vars	100	64.471	Xiphophorus_couchianus
ENSODEG00000017681	VARS	100	64.720	ENSXMAG00000010927	vars	100	64.720	Xiphophorus_maculatus