EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000017920 (Gene tree)
Gene ID: 101576497
Gene Symbol: RAB5C
Alias: RAB5CL|RABL
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 2255 bases
Position: chrJH651571.1:10750570-10752824
Accession: 101576497
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000024485	MMR_HSR1	PF01926.23	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000024761	RAB5C-201	722	XM_004633773	ENSODEP00000024485	216 (aa)	XP_004633830	UPI000333DEFB

Gene Model

Click here to download ENSODEG00000017920's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000017920's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000017920	RAB5C	97	85.714	ENSODEG00000003860	RAB5B	98	85.714
ENSODEG00000017920	RAB5C	94	39.806	ENSODEG00000005942	RAB6A	98	39.806
ENSODEG00000017920	RAB5C	90	40.500	ENSODEG00000010425	RAB24	96	41.500
ENSODEG00000017920	RAB5C	88	82.199	ENSODEG00000019065	-	100	82.199
ENSODEG00000017920	RAB5C	90	41.748	ENSODEG00000016878	-	94	41.748
ENSODEG00000017920	RAB5C	88	41.146	ENSODEG00000001343	RAB2B	89	41.146
ENSODEG00000017920	RAB5C	80	35.838	ENSODEG00000016056	RAB23	73	35.838
ENSODEG00000017920	RAB5C	71	35.294	ENSODEG00000015650	-	67	35.294
ENSODEG00000017920	RAB5C	77	32.934	ENSODEG00000010412	KRAS	95	30.387
ENSODEG00000017920	RAB5C	89	43.814	ENSODEG00000017847	-	96	43.814
ENSODEG00000017920	RAB5C	81	36.932	ENSODEG00000013827	RAB15	75	39.623
ENSODEG00000017920	RAB5C	75	39.759	ENSODEG00000011726	RAB33A	70	39.759
ENSODEG00000017920	RAB5C	94	33.019	ENSODEG00000009016	RAB36	72	33.019
ENSODEG00000017920	RAB5C	75	36.585	ENSODEG00000000520	RAB39B	77	36.585
ENSODEG00000017920	RAB5C	75	40.994	ENSODEG00000010443	-	79	40.994
ENSODEG00000017920	RAB5C	73	31.250	ENSODEG00000012270	RAB34	62	31.250
ENSODEG00000017920	RAB5C	89	34.848	ENSODEG00000019004	RAB9A	97	34.848
ENSODEG00000017920	RAB5C	81	34.254	ENSODEG00000015703	HRAS	94	34.254
ENSODEG00000017920	RAB5C	83	40.000	ENSODEG00000003833	RAB30	91	40.000
ENSODEG00000017920	RAB5C	76	37.143	ENSODEG00000002594	-	62	37.143
ENSODEG00000017920	RAB5C	75	31.902	ENSODEG00000007937	NRAS	85	31.902
ENSODEG00000017920	RAB5C	86	40.323	ENSODEG00000002013	RAB14	87	40.323
ENSODEG00000017920	RAB5C	84	41.436	ENSODEG00000016788	-	82	45.399
ENSODEG00000017920	RAB5C	77	33.333	ENSODEG00000009994	RERG	84	33.333
ENSODEG00000017920	RAB5C	84	40.331	ENSODEG00000002369	-	76	44.720
ENSODEG00000017920	RAB5C	87	42.632	ENSODEG00000011248	-	96	43.005
ENSODEG00000017920	RAB5C	73	43.210	ENSODEG00000002835	RAB7A	99	43.210
ENSODEG00000017920	RAB5C	89	37.436	ENSODEG00000007219	RAB35	96	37.436
ENSODEG00000017920	RAB5C	89	37.374	ENSODEG00000002979	RAB33B	86	37.374
ENSODEG00000017920	RAB5C	55	31.148	ENSODEG00000011676	ARL8A	62	31.148
ENSODEG00000017920	RAB5C	89	40.404	ENSODEG00000004150	-	93	40.404
ENSODEG00000017920	RAB5C	81	32.386	ENSODEG00000009963	RHEB	93	32.386
ENSODEG00000017920	RAB5C	68	92.517	ENSODEG00000000290	-	99	92.517
ENSODEG00000017920	RAB5C	90	47.938	ENSODEG00000000054	RAB22A	98	47.938
ENSODEG00000017920	RAB5C	54	42.735	ENSODEG00000012634	-	92	42.735
ENSODEG00000017920	RAB5C	79	36.842	ENSODEG00000006414	RAB12	93	34.975
ENSODEG00000017920	RAB5C	89	41.791	ENSODEG00000009908	RAB25	93	41.791
ENSODEG00000017920	RAB5C	55	31.967	ENSODEG00000009293	ARL8B	62	31.967
ENSODEG00000017920	RAB5C	90	43.689	ENSODEG00000011371	RAB11B	94	43.689

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000017920	RAB5C	100	96.296	ENSG00000108774	RAB5C	100	98.387	Homo_sapiens
ENSODEG00000017920	RAB5C	99	87.907	ENSAPOG00000016864	rab5c	98	90.233	Acanthochromis_polyacanthus
ENSODEG00000017920	RAB5C	100	96.296	ENSAMEG00000006003	RAB5C	100	96.296	Ailuropoda_melanoleuca
ENSODEG00000017920	RAB5C	99	87.963	ENSACIG00000010896	rab5c	98	89.815	Amphilophus_citrinellus
ENSODEG00000017920	RAB5C	99	87.963	ENSAOCG00000016614	rab5c	98	90.278	Amphiprion_ocellaris
ENSODEG00000017920	RAB5C	97	87.678	ENSAPEG00000017868	-	97	90.047	Amphiprion_percula
ENSODEG00000017920	RAB5C	100	88.532	ENSATEG00000001937	rab5c	100	89.908	Anabas_testudineus
ENSODEG00000017920	RAB5C	94	98.039	ENSANAG00000025390	RAB5C	100	98.039	Aotus_nancymaae
ENSODEG00000017920	RAB5C	95	88.038	ENSACLG00000008615	-	99	86.758	Astatotilapia_calliptera
ENSODEG00000017920	RAB5C	99	87.037	ENSACLG00000002706	rab5c	98	89.815	Astatotilapia_calliptera
ENSODEG00000017920	RAB5C	99	88.940	ENSAMXG00000043717	rab5c	98	90.783	Astyanax_mexicanus
ENSODEG00000017920	RAB5C	95	88.942	ENSAMXG00000037267	-	99	91.346	Astyanax_mexicanus
ENSODEG00000017920	RAB5C	100	97.222	ENSBTAG00000006982	RAB5C	100	97.222	Bos_taurus
ENSODEG00000017920	RAB5C	99	77.209	WBGene00004268	rab-5	99	77.209	Caenorhabditis_elegans
ENSODEG00000017920	RAB5C	100	96.759	ENSCAFG00000015629	RAB5C	100	96.759	Canis_familiaris
ENSODEG00000017920	RAB5C	100	96.759	ENSCAFG00020013537	RAB5C	100	96.759	Canis_lupus_dingo
ENSODEG00000017920	RAB5C	100	97.222	ENSCHIG00000012960	RAB5C	100	97.222	Capra_hircus
ENSODEG00000017920	RAB5C	100	96.759	ENSTSYG00000030531	RAB5C	100	96.759	Carlito_syrichta
ENSODEG00000017920	RAB5C	100	97.222	ENSCCAG00000025940	RAB5C	100	97.222	Cebus_capucinus
ENSODEG00000017920	RAB5C	100	96.296	ENSCATG00000040873	RAB5C	100	96.296	Cercocebus_atys
ENSODEG00000017920	RAB5C	100	99.074	ENSCLAG00000016650	RAB5C	100	99.074	Chinchilla_lanigera
ENSODEG00000017920	RAB5C	82	97.753	ENSCHOG00000009886	RAB5C	100	97.753	Choloepus_hoffmanni
ENSODEG00000017920	RAB5C	99	76.636	ENSCING00000003340	-	99	76.636	Ciona_intestinalis
ENSODEG00000017920	RAB5C	99	75.455	ENSCSAVG00000000613	-	99	84.568	Ciona_savignyi
ENSODEG00000017920	RAB5C	100	96.296	ENSCGRG00001014226	Rab5c	100	96.296	Cricetulus_griseus_chok1gshd
ENSODEG00000017920	RAB5C	100	96.296	ENSCGRG00000007534	Rab5c	100	96.296	Cricetulus_griseus_crigri
ENSODEG00000017920	RAB5C	99	89.815	ENSCSEG00000017024	rab5c	98	89.815	Cynoglossus_semilaevis
ENSODEG00000017920	RAB5C	99	87.963	ENSCVAG00000009550	rab5c	98	89.815	Cyprinodon_variegatus
ENSODEG00000017920	RAB5C	100	96.296	ENSDNOG00000038853	RAB5C	100	96.296	Dasypus_novemcinctus
ENSODEG00000017920	RAB5C	100	96.759	ENSDORG00000006819	Rab5c	100	96.759	Dipodomys_ordii
ENSODEG00000017920	RAB5C	99	73.709	FBgn0014010	Rab5	95	73.709	Drosophila_melanogaster
ENSODEG00000017920	RAB5C	99	79.535	ENSEBUG00000014794	rab5c	100	79.535	Eptatretus_burgeri
ENSODEG00000017920	RAB5C	100	96.296	ENSEASG00005009281	RAB5C	100	96.296	Equus_asinus_asinus
ENSODEG00000017920	RAB5C	100	96.759	ENSECAG00000025054	RAB5C	100	96.759	Equus_caballus
ENSODEG00000017920	RAB5C	100	96.296	ENSEEUG00000002790	RAB5C	100	96.296	Erinaceus_europaeus
ENSODEG00000017920	RAB5C	99	87.500	ENSELUG00000018516	rab5c	99	89.815	Esox_lucius
ENSODEG00000017920	RAB5C	99	87.963	ENSELUG00000010439	-	98	87.963	Esox_lucius
ENSODEG00000017920	RAB5C	100	97.222	ENSFCAG00000002148	RAB5C	100	97.222	Felis_catus
ENSODEG00000017920	RAB5C	100	96.296	ENSFDAG00000021541	RAB5C	100	96.296	Fukomys_damarensis
ENSODEG00000017920	RAB5C	99	87.963	ENSFHEG00000012117	rab5c	98	89.815	Fundulus_heteroclitus
ENSODEG00000017920	RAB5C	99	90.323	ENSFHEG00000015268	-	99	90.323	Fundulus_heteroclitus
ENSODEG00000017920	RAB5C	99	86.574	ENSGMOG00000015096	rab5c	98	89.352	Gadus_morhua
ENSODEG00000017920	RAB5C	78	86.982	ENSGMOG00000001876	-	98	86.982	Gadus_morhua
ENSODEG00000017920	RAB5C	99	88.889	ENSGAFG00000000884	rab5c	98	90.741	Gambusia_affinis
ENSODEG00000017920	RAB5C	96	90.476	ENSGAFG00000003642	-	99	88.182	Gambusia_affinis
ENSODEG00000017920	RAB5C	99	85.648	ENSGACG00000008659	rab5c	98	86.574	Gasterosteus_aculeatus
ENSODEG00000017920	RAB5C	100	96.296	ENSGGOG00000005472	RAB5C	100	96.296	Gorilla_gorilla
ENSODEG00000017920	RAB5C	99	87.037	ENSHBUG00000002014	rab5c	98	89.815	Haplochromis_burtoni
ENSODEG00000017920	RAB5C	95	88.038	ENSHBUG00000006823	-	99	86.758	Haplochromis_burtoni
ENSODEG00000017920	RAB5C	100	95.370	ENSHGLG00000012067	RAB5C	100	95.370	Heterocephalus_glaber_female
ENSODEG00000017920	RAB5C	99	88.479	ENSHCOG00000004662	rab5c	97	89.862	Hippocampus_comes
ENSODEG00000017920	RAB5C	96	81.043	ENSHCOG00000020238	-	100	79.091	Hippocampus_comes
ENSODEG00000017920	RAB5C	95	87.500	ENSIPUG00000020082	rab5c	98	88.073	Ictalurus_punctatus
ENSODEG00000017920	RAB5C	100	96.296	ENSSTOG00000006620	RAB5C	100	96.296	Ictidomys_tridecemlineatus
ENSODEG00000017920	RAB5C	100	96.296	ENSJJAG00000021181	Rab5c	100	96.296	Jaculus_jaculus
ENSODEG00000017920	RAB5C	99	87.500	ENSKMAG00000020038	rab5c	98	89.815	Kryptolebias_marmoratus
ENSODEG00000017920	RAB5C	99	88.479	ENSKMAG00000017417	-	99	88.479	Kryptolebias_marmoratus
ENSODEG00000017920	RAB5C	100	86.697	ENSLBEG00000010408	-	99	86.697	Labrus_bergylta
ENSODEG00000017920	RAB5C	99	89.352	ENSLBEG00000004128	rab5c	98	91.204	Labrus_bergylta
ENSODEG00000017920	RAB5C	99	92.991	ENSLOCG00000012566	rab5c	100	92.991	Lepisosteus_oculatus
ENSODEG00000017920	RAB5C	100	96.296	ENSMFAG00000039627	RAB5C	100	96.296	Macaca_fascicularis
ENSODEG00000017920	RAB5C	100	96.296	ENSMNEG00000000355	RAB5C	100	96.296	Macaca_nemestrina
ENSODEG00000017920	RAB5C	99	87.097	ENSMAMG00000016207	-	99	87.097	Mastacembelus_armatus
ENSODEG00000017920	RAB5C	99	87.500	ENSMAMG00000022322	rab5c	98	89.815	Mastacembelus_armatus
ENSODEG00000017920	RAB5C	95	88.038	ENSMZEG00005021090	-	99	86.758	Maylandia_zebra
ENSODEG00000017920	RAB5C	99	87.037	ENSMZEG00005022735	rab5c	98	89.815	Maylandia_zebra
ENSODEG00000017920	RAB5C	100	97.222	ENSMAUG00000015005	Rab5c	100	97.222	Mesocricetus_auratus
ENSODEG00000017920	RAB5C	100	96.296	ENSMICG00000041608	RAB5C	100	96.296	Microcebus_murinus
ENSODEG00000017920	RAB5C	100	97.222	ENSMOCG00000018531	-	100	97.222	Microtus_ochrogaster
ENSODEG00000017920	RAB5C	99	89.815	ENSMMOG00000020621	rab5c	98	89.815	Mola_mola
ENSODEG00000017920	RAB5C	99	87.156	ENSMALG00000022348	-	99	87.156	Monopterus_albus
ENSODEG00000017920	RAB5C	97	83.886	ENSMALG00000006052	rab5c	96	83.721	Monopterus_albus
ENSODEG00000017920	RAB5C	100	97.222	MGP_CAROLIEiJ_G0017184	Rab5c	100	97.222	Mus_caroli
ENSODEG00000017920	RAB5C	100	97.222	ENSMUSG00000019173	Rab5c	100	97.222	Mus_musculus
ENSODEG00000017920	RAB5C	100	97.222	MGP_PahariEiJ_G0018314	Rab5c	100	97.222	Mus_pahari
ENSODEG00000017920	RAB5C	100	97.222	MGP_SPRETEiJ_G0018027	Rab5c	100	97.222	Mus_spretus
ENSODEG00000017920	RAB5C	100	96.296	ENSMPUG00000010554	RAB5C	100	96.296	Mustela_putorius_furo
ENSODEG00000017920	RAB5C	100	98.148	ENSNGAG00000010286	Rab5c	100	98.148	Nannospalax_galili
ENSODEG00000017920	RAB5C	95	88.038	ENSNBRG00000016922	-	99	86.758	Neolamprologus_brichardi
ENSODEG00000017920	RAB5C	99	87.963	ENSNBRG00000018165	rab5c	98	90.741	Neolamprologus_brichardi
ENSODEG00000017920	RAB5C	82	91.573	ENSOPRG00000008255	RAB5C	100	91.573	Ochotona_princeps
ENSODEG00000017920	RAB5C	99	87.963	ENSONIG00000001113	rab5c	98	90.741	Oreochromis_niloticus
ENSODEG00000017920	RAB5C	100	87.156	ENSORLG00000003882	rab5c	100	88.532	Oryzias_latipes
ENSODEG00000017920	RAB5C	100	88.073	ENSORLG00020008388	rab5c	100	88.073	Oryzias_latipes_hni
ENSODEG00000017920	RAB5C	100	87.156	ENSORLG00015021900	rab5c	100	88.532	Oryzias_latipes_hsok
ENSODEG00000017920	RAB5C	100	87.156	ENSOMEG00000023078	rab5c	100	88.532	Oryzias_melastigma
ENSODEG00000017920	RAB5C	100	97.222	ENSOGAG00000009456	RAB5C	100	97.222	Otolemur_garnettii
ENSODEG00000017920	RAB5C	100	97.222	ENSOARG00000018768	RAB5C	100	97.222	Ovis_aries
ENSODEG00000017920	RAB5C	100	96.296	ENSPPAG00000037206	RAB5C	100	96.296	Pan_paniscus
ENSODEG00000017920	RAB5C	100	97.222	ENSPPRG00000005745	RAB5C	100	97.222	Panthera_pardus
ENSODEG00000017920	RAB5C	100	97.222	ENSPTIG00000008177	RAB5C	100	97.222	Panthera_tigris_altaica
ENSODEG00000017920	RAB5C	100	96.296	ENSPTRG00000009194	RAB5C	100	96.296	Pan_troglodytes
ENSODEG00000017920	RAB5C	99	87.500	ENSPKIG00000020112	-	99	87.500	Paramormyrops_kingsleyae
ENSODEG00000017920	RAB5C	99	88.318	ENSPKIG00000001237	-	99	88.318	Paramormyrops_kingsleyae
ENSODEG00000017920	RAB5C	99	86.111	ENSPMGG00000010792	rab5c	97	90.047	Periophthalmus_magnuspinnatus
ENSODEG00000017920	RAB5C	100	97.222	ENSPEMG00000017971	Rab5c	100	97.222	Peromyscus_maniculatus_bairdii
ENSODEG00000017920	RAB5C	99	78.140	ENSPMAG00000001399	rab5c	100	78.140	Petromyzon_marinus
ENSODEG00000017920	RAB5C	99	78.605	ENSPMAG00000007867	rab5c	100	78.605	Petromyzon_marinus
ENSODEG00000017920	RAB5C	99	78.378	ENSPMAG00000000008	rab5c	100	78.378	Petromyzon_marinus
ENSODEG00000017920	RAB5C	100	95.370	ENSPCIG00000020225	-	100	95.370	Phascolarctos_cinereus
ENSODEG00000017920	RAB5C	99	88.940	ENSPLAG00000016333	-	99	88.940	Poecilia_latipinna
ENSODEG00000017920	RAB5C	99	88.889	ENSPLAG00000004790	rab5c	98	90.741	Poecilia_latipinna
ENSODEG00000017920	RAB5C	97	87.736	ENSPMEG00000012614	-	98	88.128	Poecilia_mexicana
ENSODEG00000017920	RAB5C	99	88.889	ENSPMEG00000011336	rab5c	98	90.741	Poecilia_mexicana
ENSODEG00000017920	RAB5C	87	91.534	ENSPREG00000022167	-	89	92.896	Poecilia_reticulata
ENSODEG00000017920	RAB5C	99	88.889	ENSPREG00000010146	rab5c	98	90.741	Poecilia_reticulata
ENSODEG00000017920	RAB5C	100	96.296	ENSPPYG00000008398	RAB5C	100	96.296	Pongo_abelii
ENSODEG00000017920	RAB5C	100	95.833	ENSPCAG00000016412	RAB5C	100	95.833	Procavia_capensis
ENSODEG00000017920	RAB5C	100	96.296	ENSPCOG00000026327	RAB5C	100	96.296	Propithecus_coquereli
ENSODEG00000017920	RAB5C	100	96.759	ENSPVAG00000003867	RAB5C	100	96.759	Pteropus_vampyrus
ENSODEG00000017920	RAB5C	95	88.038	ENSPNYG00000015851	-	99	86.758	Pundamilia_nyererei
ENSODEG00000017920	RAB5C	99	87.037	ENSPNYG00000010615	rab5c	98	89.815	Pundamilia_nyererei
ENSODEG00000017920	RAB5C	96	87.143	ENSPNAG00000002218	-	99	89.524	Pygocentrus_nattereri
ENSODEG00000017920	RAB5C	99	90.783	ENSPNAG00000028138	rab5c	98	90.783	Pygocentrus_nattereri
ENSODEG00000017920	RAB5C	100	97.222	ENSRNOG00000018568	Rab5c	100	97.222	Rattus_norvegicus
ENSODEG00000017920	RAB5C	100	96.296	ENSRBIG00000031376	RAB5C	100	96.296	Rhinopithecus_bieti
ENSODEG00000017920	RAB5C	100	96.296	ENSRROG00000032895	RAB5C	100	96.296	Rhinopithecus_roxellana
ENSODEG00000017920	RAB5C	100	97.222	ENSSBOG00000032552	-	100	97.222	Saimiri_boliviensis_boliviensis
ENSODEG00000017920	RAB5C	100	95.833	ENSSHAG00000005267	-	100	95.833	Sarcophilus_harrisii
ENSODEG00000017920	RAB5C	99	87.097	ENSSFOG00015009988	-	99	87.097	Scleropages_formosus
ENSODEG00000017920	RAB5C	96	91.346	ENSSMAG00000007323	rab5c	98	89.815	Scophthalmus_maximus
ENSODEG00000017920	RAB5C	99	90.741	ENSSDUG00000023008	rab5c	98	90.741	Seriola_dumerili
ENSODEG00000017920	RAB5C	99	90.278	ENSSLDG00000017771	rab5c	98	90.278	Seriola_lalandi_dorsalis
ENSODEG00000017920	RAB5C	100	94.444	ENSSPUG00000012950	-	100	94.444	Sphenodon_punctatus
ENSODEG00000017920	RAB5C	99	88.889	ENSSPAG00000006436	rab5c	98	91.667	Stegastes_partitus
ENSODEG00000017920	RAB5C	100	97.222	ENSSSCG00000032467	RAB5C	100	97.222	Sus_scrofa
ENSODEG00000017920	RAB5C	99	87.963	ENSTRUG00000015590	rab5c	98	90.278	Takifugu_rubripes
ENSODEG00000017920	RAB5C	96	89.952	ENSTNIG00000011711	rab5c	95	89.952	Tetraodon_nigroviridis
ENSODEG00000017920	RAB5C	100	96.296	ENSTBEG00000007092	RAB5C	100	96.296	Tupaia_belangeri
ENSODEG00000017920	RAB5C	100	96.296	ENSTTRG00000006673	RAB5C	100	96.296	Tursiops_truncatus
ENSODEG00000017920	RAB5C	100	96.296	ENSUAMG00000024343	RAB5C	100	96.296	Ursus_americanus
ENSODEG00000017920	RAB5C	100	96.296	ENSUMAG00000023270	RAB5C	100	96.296	Ursus_maritimus
ENSODEG00000017920	RAB5C	99	88.426	ENSXCOG00000016788	rab5c	98	90.741	Xiphophorus_couchianus
ENSODEG00000017920	RAB5C	96	90.952	ENSXCOG00000006300	-	99	88.636	Xiphophorus_couchianus
ENSODEG00000017920	RAB5C	99	89.862	ENSXMAG00000022179	-	99	89.862	Xiphophorus_maculatus
ENSODEG00000017920	RAB5C	99	88.889	ENSXMAG00000003266	rab5c	98	90.741	Xiphophorus_maculatus