EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000017965 (Gene tree)
Gene ID: 101581190
Gene Symbol: VARS2
Alias: -
Full Name: valyl-tRNA synthetase 2%2C mitochondrial
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 16440 bases
Position: chrJH651520.1:33473529-33489968
Accession: 101581190
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000024540	tRNA-synt_1g	PF09334.11	4e-15	1	1
ENSODEP00000024540	Anticodon_1	PF08264.13	1.1e-27	1	1
ENSODEP00000024540	tRNA-synt_1	PF00133.22	6e-184	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000024816	VARS2-201	3192	XM_004624506	ENSODEP00000024540	1063 (aa)	XP_004624563	UPI0003339DCE

Gene Model

Click here to download ENSODEG00000017965's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000017965's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000017965	VARS2	95	51.255	ENSODEG00000017681	VARS	83	49.577

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000017965	VARS2	93	51.170	ENSAPOG00000007396	vars2	97	50.569	Acanthochromis_polyacanthus
ENSODEG00000017965	VARS2	99	81.415	ENSAMEG00000012997	VARS2	97	81.415	Ailuropoda_melanoleuca
ENSODEG00000017965	VARS2	97	50.801	ENSACIG00000004344	vars2	99	50.798	Amphilophus_citrinellus
ENSODEG00000017965	VARS2	93	50.633	ENSAOCG00000000476	vars2	97	50.047	Amphiprion_ocellaris
ENSODEG00000017965	VARS2	93	50.633	ENSAPEG00000008646	vars2	94	50.047	Amphiprion_percula
ENSODEG00000017965	VARS2	90	53.524	ENSATEG00000012291	vars2	94	52.601	Anabas_testudineus
ENSODEG00000017965	VARS2	96	57.971	ENSACAG00000022093	VARS2	95	57.778	Anolis_carolinensis
ENSODEG00000017965	VARS2	99	82.925	ENSANAG00000038018	VARS2	99	82.925	Aotus_nancymaae
ENSODEG00000017965	VARS2	97	51.078	ENSACLG00000018673	vars2	99	50.984	Astatotilapia_calliptera
ENSODEG00000017965	VARS2	94	52.335	ENSAMXG00000017773	vars2	96	53.434	Astyanax_mexicanus
ENSODEG00000017965	VARS2	99	83.049	ENSBTAG00000010698	VARS2	99	82.925	Bos_taurus
ENSODEG00000017965	VARS2	99	82.892	ENSCJAG00000019826	VARS2	99	82.892	Callithrix_jacchus
ENSODEG00000017965	VARS2	99	79.868	ENSCAFG00000000454	VARS2	99	79.868	Canis_familiaris
ENSODEG00000017965	VARS2	87	81.466	ENSCAFG00020019387	VARS2	95	81.525	Canis_lupus_dingo
ENSODEG00000017965	VARS2	99	82.860	ENSCHIG00000007847	VARS2	99	82.736	Capra_hircus
ENSODEG00000017965	VARS2	99	81.569	ENSTSYG00000009904	VARS2	99	81.569	Carlito_syrichta
ENSODEG00000017965	VARS2	88	88.937	ENSCAPG00000017770	VARS2	99	88.937	Cavia_aperea
ENSODEG00000017965	VARS2	99	87.853	ENSCPOG00000021834	VARS2	99	87.853	Cavia_porcellus
ENSODEG00000017965	VARS2	99	83.113	ENSCCAG00000037907	VARS2	99	83.113	Cebus_capucinus
ENSODEG00000017965	VARS2	99	83.679	ENSCATG00000032554	VARS2	99	83.679	Cercocebus_atys
ENSODEG00000017965	VARS2	99	88.701	ENSCLAG00000002889	VARS2	99	88.701	Chinchilla_lanigera
ENSODEG00000017965	VARS2	99	83.113	ENSCSAG00000008327	VARS2	99	83.113	Chlorocebus_sabaeus
ENSODEG00000017965	VARS2	90	62.657	ENSCPBG00000021502	VARS2	95	62.448	Chrysemys_picta_bellii
ENSODEG00000017965	VARS2	99	83.491	ENSCANG00000014991	VARS2	99	83.491	Colobus_angolensis_palliatus
ENSODEG00000017965	VARS2	98	80.000	ENSCGRG00001021535	Vars2	99	79.567	Cricetulus_griseus_chok1gshd
ENSODEG00000017965	VARS2	98	80.000	ENSCGRG00000014112	Vars2	99	79.567	Cricetulus_griseus_crigri
ENSODEG00000017965	VARS2	85	57.044	ENSCSEG00000015432	vars2	88	67.333	Cynoglossus_semilaevis
ENSODEG00000017965	VARS2	66	51.481	ENSCVAG00000017765	vars2	97	51.340	Cyprinodon_variegatus
ENSODEG00000017965	VARS2	95	51.359	ENSDARG00000056717	vars2	96	51.262	Danio_rerio
ENSODEG00000017965	VARS2	79	83.095	ENSDORG00000008516	Vars2	93	83.095	Dipodomys_ordii
ENSODEG00000017965	VARS2	99	72.212	ENSETEG00000014844	VARS2	99	72.212	Echinops_telfairi
ENSODEG00000017965	VARS2	99	83.051	ENSEASG00005019997	VARS2	97	83.051	Equus_asinus_asinus
ENSODEG00000017965	VARS2	99	83.992	ENSECAG00000018202	VARS2	99	83.992	Equus_caballus
ENSODEG00000017965	VARS2	63	79.612	ENSEEUG00000012591	-	63	79.612	Erinaceus_europaeus
ENSODEG00000017965	VARS2	94	52.459	ENSELUG00000017824	vars2	96	51.744	Esox_lucius
ENSODEG00000017965	VARS2	99	80.791	ENSFCAG00000010531	VARS2	99	80.791	Felis_catus
ENSODEG00000017965	VARS2	99	86.106	ENSFDAG00000017216	VARS2	99	86.106	Fukomys_damarensis
ENSODEG00000017965	VARS2	84	52.455	ENSFHEG00000013932	vars2	91	51.453	Fundulus_heteroclitus
ENSODEG00000017965	VARS2	88	55.882	ENSGMOG00000018960	vars2	99	55.626	Gadus_morhua
ENSODEG00000017965	VARS2	80	49.810	ENSGAFG00000004737	vars2	88	49.683	Gambusia_affinis
ENSODEG00000017965	VARS2	87	55.165	ENSGACG00000001464	vars2	99	53.947	Gasterosteus_aculeatus
ENSODEG00000017965	VARS2	90	61.231	ENSGAGG00000011652	VARS2	98	61.128	Gopherus_agassizii
ENSODEG00000017965	VARS2	99	83.019	ENSGGOG00000014587	VARS2	99	83.019	Gorilla_gorilla
ENSODEG00000017965	VARS2	87	52.954	ENSHBUG00000002448	vars2	91	52.848	Haplochromis_burtoni
ENSODEG00000017965	VARS2	99	83.804	ENSHGLG00000012886	VARS2	96	83.804	Heterocephalus_glaber_female
ENSODEG00000017965	VARS2	99	83.616	ENSHGLG00100016535	VARS2	99	83.616	Heterocephalus_glaber_male
ENSODEG00000017965	VARS2	69	48.327	ENSHCOG00000017907	vars2	94	50.141	Hippocampus_comes
ENSODEG00000017965	VARS2	89	55.729	ENSIPUG00000015573	Vars2	93	53.575	Ictalurus_punctatus
ENSODEG00000017965	VARS2	99	82.846	ENSSTOG00000009924	VARS2	99	82.846	Ictidomys_tridecemlineatus
ENSODEG00000017965	VARS2	99	80.508	ENSJJAG00000011144	Vars2	99	80.508	Jaculus_jaculus
ENSODEG00000017965	VARS2	93	51.068	ENSKMAG00000001393	vars2	96	50.428	Kryptolebias_marmoratus
ENSODEG00000017965	VARS2	52	62.703	ENSLBEG00000005480	-	81	62.613	Labrus_bergylta
ENSODEG00000017965	VARS2	95	50.958	ENSLBEG00000011949	vars2	97	50.519	Labrus_bergylta
ENSODEG00000017965	VARS2	95	52.077	ENSLACG00000001576	-	99	52.132	Latimeria_chalumnae
ENSODEG00000017965	VARS2	100	81.185	ENSLAFG00000015183	VARS2	100	81.185	Loxodonta_africana
ENSODEG00000017965	VARS2	99	83.302	ENSMFAG00000042367	VARS2	99	83.302	Macaca_fascicularis
ENSODEG00000017965	VARS2	99	83.302	ENSMMUG00000018609	VARS2	99	83.302	Macaca_mulatta
ENSODEG00000017965	VARS2	99	83.491	ENSMNEG00000043163	VARS2	99	83.491	Macaca_nemestrina
ENSODEG00000017965	VARS2	99	83.679	ENSMLEG00000041728	VARS2	97	83.679	Mandrillus_leucophaeus
ENSODEG00000017965	VARS2	95	50.337	ENSMAMG00000020339	vars2	97	50.047	Mastacembelus_armatus
ENSODEG00000017965	VARS2	97	50.984	ENSMZEG00005017669	vars2	99	50.890	Maylandia_zebra
ENSODEG00000017965	VARS2	99	79.962	ENSMAUG00000018946	Vars2	99	79.962	Mesocricetus_auratus
ENSODEG00000017965	VARS2	84	85.442	ENSMICG00000005365	VARS2	100	85.442	Microcebus_murinus
ENSODEG00000017965	VARS2	94	82.567	ENSMOCG00000014607	Vars2	99	82.567	Microtus_ochrogaster
ENSODEG00000017965	VARS2	92	51.859	ENSMMOG00000012122	vars2	97	50.240	Mola_mola
ENSODEG00000017965	VARS2	99	70.998	ENSMODG00000015848	VARS2	99	70.998	Monodelphis_domestica
ENSODEG00000017965	VARS2	89	53.894	ENSMALG00000009217	vars2	95	53.790	Monopterus_albus
ENSODEG00000017965	VARS2	99	80.791	MGP_CAROLIEiJ_G0021529	Vars2	99	80.791	Mus_caroli
ENSODEG00000017965	VARS2	99	80.508	ENSMUSG00000038838	Vars2	99	80.508	Mus_musculus
ENSODEG00000017965	VARS2	99	80.885	MGP_PahariEiJ_G0020523	Vars2	99	80.885	Mus_pahari
ENSODEG00000017965	VARS2	99	80.414	MGP_SPRETEiJ_G0022436	Vars2	99	80.414	Mus_spretus
ENSODEG00000017965	VARS2	99	80.791	ENSMPUG00000011643	VARS2	99	80.791	Mustela_putorius_furo
ENSODEG00000017965	VARS2	99	80.651	ENSMLUG00000002356	VARS2	97	80.651	Myotis_lucifugus
ENSODEG00000017965	VARS2	98	74.976	ENSNGAG00000020607	Vars2	99	74.157	Nannospalax_galili
ENSODEG00000017965	VARS2	60	50.000	ENSNBRG00000001624	vars2	57	51.934	Neolamprologus_brichardi
ENSODEG00000017965	VARS2	99	80.094	ENSNLEG00000005625	VARS2	97	80.094	Nomascus_leucogenys
ENSODEG00000017965	VARS2	78	72.213	ENSMEUG00000014475	VARS2	90	72.213	Notamacropus_eugenii
ENSODEG00000017965	VARS2	89	78.855	ENSOPRG00000000682	VARS2	90	78.855	Ochotona_princeps
ENSODEG00000017965	VARS2	92	37.694	ENSONIG00000004734	vars2	99	37.791	Oreochromis_niloticus
ENSODEG00000017965	VARS2	75	88.235	ENSOANG00000000398	-	98	88.235	Ornithorhynchus_anatinus
ENSODEG00000017965	VARS2	99	76.994	ENSOCUG00000021496	VARS2	64	77.037	Oryctolagus_cuniculus
ENSODEG00000017965	VARS2	89	52.518	ENSORLG00000010632	vars2	93	51.076	Oryzias_latipes
ENSODEG00000017965	VARS2	94	51.215	ENSORLG00020018584	vars2	97	50.329	Oryzias_latipes_hni
ENSODEG00000017965	VARS2	94	51.312	ENSORLG00015010408	vars2	96	50.524	Oryzias_latipes_hsok
ENSODEG00000017965	VARS2	94	51.942	ENSOMEG00000008360	vars2	96	51.328	Oryzias_melastigma
ENSODEG00000017965	VARS2	99	81.921	ENSOGAG00000006087	VARS2	97	81.921	Otolemur_garnettii
ENSODEG00000017965	VARS2	99	82.025	ENSOARG00000010844	VARS2	98	81.904	Ovis_aries
ENSODEG00000017965	VARS2	99	83.113	ENSPPAG00000041141	VARS2	99	83.113	Pan_paniscus
ENSODEG00000017965	VARS2	99	80.414	ENSPPRG00000006751	VARS2	97	80.414	Panthera_pardus
ENSODEG00000017965	VARS2	99	80.414	ENSPTIG00000017799	VARS2	98	81.910	Panthera_tigris_altaica
ENSODEG00000017965	VARS2	99	83.113	ENSPTRG00000034497	VARS2	99	83.113	Pan_troglodytes
ENSODEG00000017965	VARS2	99	83.585	ENSPANG00000018481	VARS2	100	84.043	Papio_anubis
ENSODEG00000017965	VARS2	95	54.395	ENSPKIG00000011372	vars2	96	54.098	Paramormyrops_kingsleyae
ENSODEG00000017965	VARS2	59	67.036	ENSPSIG00000006206	VARS2	92	66.358	Pelodiscus_sinensis
ENSODEG00000017965	VARS2	96	52.314	ENSPMGG00000000465	vars2	97	52.372	Periophthalmus_magnuspinnatus
ENSODEG00000017965	VARS2	99	81.007	ENSPEMG00000014691	Vars2	99	81.007	Peromyscus_maniculatus_bairdii
ENSODEG00000017965	VARS2	99	73.629	ENSPCIG00000015040	VARS2	99	73.629	Phascolarctos_cinereus
ENSODEG00000017965	VARS2	92	52.390	ENSPFOG00000017616	vars2	93	52.092	Poecilia_formosa
ENSODEG00000017965	VARS2	92	51.837	ENSPLAG00000019778	vars2	94	51.639	Poecilia_latipinna
ENSODEG00000017965	VARS2	92	52.135	ENSPMEG00000011123	vars2	93	51.738	Poecilia_mexicana
ENSODEG00000017965	VARS2	88	47.867	ENSPREG00000014998	vars2	93	46.815	Poecilia_reticulata
ENSODEG00000017965	VARS2	99	83.569	ENSPPYG00000016424	VARS2	99	83.569	Pongo_abelii
ENSODEG00000017965	VARS2	84	77.129	ENSPCAG00000006946	VARS2	84	77.129	Procavia_capensis
ENSODEG00000017965	VARS2	99	82.116	ENSPCOG00000014839	VARS2	97	82.116	Propithecus_coquereli
ENSODEG00000017965	VARS2	99	80.566	ENSPVAG00000004197	VARS2	99	80.566	Pteropus_vampyrus
ENSODEG00000017965	VARS2	79	60.108	ENSPNYG00000010314	vars2	95	60.108	Pundamilia_nyererei
ENSODEG00000017965	VARS2	93	53.884	ENSPNAG00000026793	vars2	92	53.589	Pygocentrus_nattereri
ENSODEG00000017965	VARS2	99	80.038	ENSRNOG00000000833	Vars2	99	80.038	Rattus_norvegicus
ENSODEG00000017965	VARS2	99	83.208	ENSRBIG00000032725	VARS2	99	83.208	Rhinopithecus_bieti
ENSODEG00000017965	VARS2	99	83.585	ENSRROG00000043847	VARS2	99	83.585	Rhinopithecus_roxellana
ENSODEG00000017965	VARS2	99	81.238	ENSSBOG00000033240	VARS2	97	81.423	Saimiri_boliviensis_boliviensis
ENSODEG00000017965	VARS2	99	72.117	ENSSHAG00000009307	VARS2	99	72.117	Sarcophilus_harrisii
ENSODEG00000017965	VARS2	97	52.422	ENSSFOG00015016187	vars2	97	52.232	Scleropages_formosus
ENSODEG00000017965	VARS2	92	54.016	ENSSMAG00000020842	vars2	98	52.412	Scophthalmus_maximus
ENSODEG00000017965	VARS2	93	51.859	ENSSDUG00000011598	vars2	97	51.326	Seriola_dumerili
ENSODEG00000017965	VARS2	90	52.869	ENSSLDG00000015492	vars2	97	50.813	Seriola_lalandi_dorsalis
ENSODEG00000017965	VARS2	57	87.591	ENSSARG00000003786	-	69	87.591	Sorex_araneus
ENSODEG00000017965	VARS2	90	58.065	ENSSPUG00000014700	VARS2	96	57.960	Sphenodon_punctatus
ENSODEG00000017965	VARS2	92	49.850	ENSSPAG00000004654	vars2	97	48.378	Stegastes_partitus
ENSODEG00000017965	VARS2	99	82.674	ENSSSCG00000001384	VARS2	99	83.855	Sus_scrofa
ENSODEG00000017965	VARS2	94	52.414	ENSTRUG00000005264	vars2	99	51.139	Takifugu_rubripes
ENSODEG00000017965	VARS2	94	52.259	ENSTNIG00000005916	vars2	97	51.174	Tetraodon_nigroviridis
ENSODEG00000017965	VARS2	52	86.567	ENSTBEG00000007976	-	53	87.879	Tupaia_belangeri
ENSODEG00000017965	VARS2	93	80.357	ENSTTRG00000012243	VARS2	93	80.357	Tursiops_truncatus
ENSODEG00000017965	VARS2	99	81.338	ENSUAMG00000026124	VARS2	99	83.460	Ursus_americanus
ENSODEG00000017965	VARS2	99	82.170	ENSUMAG00000019894	VARS2	99	82.170	Ursus_maritimus
ENSODEG00000017965	VARS2	99	80.226	ENSVVUG00000010754	VARS2	95	80.226	Vulpes_vulpes
ENSODEG00000017965	VARS2	89	54.621	ENSXETG00000003036	vars2	99	54.517	Xenopus_tropicalis
ENSODEG00000017965	VARS2	88	54.074	ENSXCOG00000003455	vars2	94	52.477	Xiphophorus_couchianus
ENSODEG00000017965	VARS2	92	51.635	ENSXMAG00000013523	vars2	96	50.142	Xiphophorus_maculatus