EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000017998 (Gene tree)
Gene ID: 101592310
Gene Symbol: -
Alias: -
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 17406 bases
Position: chrJH651571.1:11777726-11795131
Accession: 101592310
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000024588	AD	PF09793.9	8.8e-25	1	1
ENSODEP00000024589	AD	PF09793.9	1.2e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000024864	-	867	XM_004633815	ENSODEP00000024588	195 (aa)	XP_004633872	UPI0003338ACB
ENSODET00000024865	-	414	-	ENSODEP00000024589	137 (aa)	-	-

Gene Model

Click here to download ENSODEG00000017998's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000017998's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000017998	-	100	89.231	ENSODEG00000007886	-	74	89.231

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000017998	-	100	98.462	ENSG00000161654	LSM12	100	98.462	Homo_sapiens
ENSODEG00000017998	-	99	86.082	ENSAPOG00000007907	lsm12b	99	86.082	Acanthochromis_polyacanthus
ENSODEG00000017998	-	100	98.165	ENSAMEG00000018321	LSM12	100	96.465	Ailuropoda_melanoleuca
ENSODEG00000017998	-	99	84.021	ENSACIG00000008538	lsm12b	99	84.021	Amphilophus_citrinellus
ENSODEG00000017998	-	99	85.567	ENSAOCG00000021847	lsm12b	87	85.567	Amphiprion_ocellaris
ENSODEG00000017998	-	99	85.567	ENSAPEG00000002252	lsm12b	99	85.567	Amphiprion_percula
ENSODEG00000017998	-	99	85.052	ENSATEG00000005705	lsm12b	99	85.052	Anabas_testudineus
ENSODEG00000017998	-	100	93.333	ENSACAG00000004618	LSM12	100	93.333	Anolis_carolinensis
ENSODEG00000017998	-	100	98.462	ENSANAG00000029011	LSM12	100	98.462	Aotus_nancymaae
ENSODEG00000017998	-	99	84.536	ENSACLG00000026332	lsm12b	99	84.536	Astatotilapia_calliptera
ENSODEG00000017998	-	100	79.082	ENSAMXG00000036117	lsm12a	91	79.082	Astyanax_mexicanus
ENSODEG00000017998	-	99	84.536	ENSAMXG00000032952	lsm12b	99	84.536	Astyanax_mexicanus
ENSODEG00000017998	-	100	98.462	ENSBTAG00000016252	LSM12	100	98.462	Bos_taurus
ENSODEG00000017998	-	100	98.462	ENSCJAG00000048480	LSM12	100	98.462	Callithrix_jacchus
ENSODEG00000017998	-	100	98.462	ENSCAFG00000014379	LSM12	92	98.462	Canis_familiaris
ENSODEG00000017998	-	100	98.462	ENSCAFG00020012173	LSM12	100	98.462	Canis_lupus_dingo
ENSODEG00000017998	-	100	98.462	ENSCHIG00000018175	LSM12	100	98.462	Capra_hircus
ENSODEG00000017998	-	100	98.462	ENSTSYG00000036361	LSM12	100	98.462	Carlito_syrichta
ENSODEG00000017998	-	83	94.444	ENSCAPG00000009647	LSM12	89	94.444	Cavia_aperea
ENSODEG00000017998	-	100	97.436	ENSCPOG00000012860	LSM12	100	98.165	Cavia_porcellus
ENSODEG00000017998	-	100	98.462	ENSCCAG00000032905	LSM12	100	98.462	Cebus_capucinus
ENSODEG00000017998	-	100	98.462	ENSCATG00000030577	-	100	98.462	Cercocebus_atys
ENSODEG00000017998	-	100	98.462	ENSCLAG00000015759	LSM12	100	98.462	Chinchilla_lanigera
ENSODEG00000017998	-	100	97.949	ENSCSAG00000003486	LSM12	100	97.949	Chlorocebus_sabaeus
ENSODEG00000017998	-	80	97.248	ENSCHOG00000001198	LSM12	100	97.248	Choloepus_hoffmanni
ENSODEG00000017998	-	100	93.333	ENSCPBG00000027105	LSM12	100	93.333	Chrysemys_picta_bellii
ENSODEG00000017998	-	100	98.462	ENSCANG00000043328	LSM12	100	98.462	Colobus_angolensis_palliatus
ENSODEG00000017998	-	100	98.462	ENSCGRG00001002094	Lsm12	100	98.462	Cricetulus_griseus_chok1gshd
ENSODEG00000017998	-	80	98.165	ENSCGRG00000004316	Lsm12	95	91.667	Cricetulus_griseus_crigri
ENSODEG00000017998	-	99	84.536	ENSCSEG00000008434	lsm12b	99	84.536	Cynoglossus_semilaevis
ENSODEG00000017998	-	99	84.536	ENSCVAG00000008755	lsm12b	99	84.536	Cyprinodon_variegatus
ENSODEG00000017998	-	99	76.804	ENSDARG00000028848	lsm12a	99	76.804	Danio_rerio
ENSODEG00000017998	-	99	84.536	ENSDARG00000109510	lsm12b	99	84.536	Danio_rerio
ENSODEG00000017998	-	100	97.949	ENSDNOG00000002418	LSM12	91	97.949	Dasypus_novemcinctus
ENSODEG00000017998	-	100	98.462	ENSDORG00000016381	Lsm12	100	98.462	Dipodomys_ordii
ENSODEG00000017998	-	73	32.692	FBgn0036057	CG14164	82	32.692	Drosophila_melanogaster
ENSODEG00000017998	-	83	33.133	FBgn0030364	Lsm12	76	32.934	Drosophila_melanogaster
ENSODEG00000017998	-	90	86.857	ENSETEG00000011012	-	100	86.857	Echinops_telfairi
ENSODEG00000017998	-	100	97.949	ENSETEG00000008374	LSM12	100	97.949	Echinops_telfairi
ENSODEG00000017998	-	85	63.855	ENSEBUG00000016299	lsm12a	92	63.855	Eptatretus_burgeri
ENSODEG00000017998	-	100	98.462	ENSEASG00005010155	LSM12	100	98.462	Equus_asinus_asinus
ENSODEG00000017998	-	100	98.462	ENSECAG00000009071	LSM12	100	98.462	Equus_caballus
ENSODEG00000017998	-	81	94.595	ENSEEUG00000002419	-	100	97.386	Erinaceus_europaeus
ENSODEG00000017998	-	99	81.959	ENSELUG00000000256	-	99	81.959	Esox_lucius
ENSODEG00000017998	-	99	82.990	ENSELUG00000015538	lsm12b	99	78.351	Esox_lucius
ENSODEG00000017998	-	100	98.462	ENSFCAG00000037021	LSM12	100	98.462	Felis_catus
ENSODEG00000017998	-	81	95.495	ENSFDAG00000008954	LSM12	87	97.973	Fukomys_damarensis
ENSODEG00000017998	-	99	83.505	ENSFHEG00000019913	lsm12b	99	83.505	Fundulus_heteroclitus
ENSODEG00000017998	-	81	85.586	ENSGMOG00000015449	lsm12b	100	84.810	Gadus_morhua
ENSODEG00000017998	-	80	92.661	ENSGALG00000039803	LSM12	100	94.118	Gallus_gallus
ENSODEG00000017998	-	99	84.021	ENSGAFG00000011829	lsm12b	99	84.021	Gambusia_affinis
ENSODEG00000017998	-	81	85.586	ENSGACG00000003428	lsm12b	100	85.443	Gasterosteus_aculeatus
ENSODEG00000017998	-	100	94.359	ENSGAGG00000021965	LSM12	100	94.359	Gopherus_agassizii
ENSODEG00000017998	-	100	98.462	ENSGGOG00000010589	-	100	98.462	Gorilla_gorilla
ENSODEG00000017998	-	85	85.455	ENSHBUG00000007667	lsm12b	73	85.455	Haplochromis_burtoni
ENSODEG00000017998	-	100	98.462	ENSHGLG00000011411	LSM12	100	98.462	Heterocephalus_glaber_female
ENSODEG00000017998	-	80	97.273	ENSHGLG00100000241	LSM12	96	86.188	Heterocephalus_glaber_male
ENSODEG00000017998	-	99	84.021	ENSHCOG00000002094	lsm12b	99	84.021	Hippocampus_comes
ENSODEG00000017998	-	98	77.778	ENSIPUG00000008936	lsm12a	98	75.000	Ictalurus_punctatus
ENSODEG00000017998	-	99	84.536	ENSIPUG00000014800	lsm12	99	84.536	Ictalurus_punctatus
ENSODEG00000017998	-	100	98.462	ENSSTOG00000007403	LSM12	100	98.462	Ictidomys_tridecemlineatus
ENSODEG00000017998	-	100	97.436	ENSJJAG00000004364	-	100	97.436	Jaculus_jaculus
ENSODEG00000017998	-	97	87.368	ENSJJAG00000011793	-	100	87.368	Jaculus_jaculus
ENSODEG00000017998	-	81	84.277	ENSJJAG00000014652	-	95	84.277	Jaculus_jaculus
ENSODEG00000017998	-	88	83.815	ENSKMAG00000007704	lsm12b	58	83.815	Kryptolebias_marmoratus
ENSODEG00000017998	-	99	85.567	ENSLBEG00000027999	lsm12b	99	85.567	Labrus_bergylta
ENSODEG00000017998	-	100	89.744	ENSLACG00000015981	LSM12	100	89.744	Latimeria_chalumnae
ENSODEG00000017998	-	99	82.474	ENSLOCG00000013079	lsm12b	98	82.474	Lepisosteus_oculatus
ENSODEG00000017998	-	100	98.462	ENSLAFG00000005202	LSM12	100	98.462	Loxodonta_africana
ENSODEG00000017998	-	100	98.462	ENSMFAG00000031376	LSM12	100	98.462	Macaca_fascicularis
ENSODEG00000017998	-	100	66.423	ENSMMUG00000042106	-	100	85.057	Macaca_mulatta
ENSODEG00000017998	-	100	65.693	ENSMMUG00000038408	-	100	85.057	Macaca_mulatta
ENSODEG00000017998	-	100	98.462	ENSMMUG00000006804	LSM12	100	98.462	Macaca_mulatta
ENSODEG00000017998	-	100	98.462	ENSMNEG00000030594	-	100	98.462	Macaca_nemestrina
ENSODEG00000017998	-	100	98.462	ENSMLEG00000039934	LSM12	100	98.462	Mandrillus_leucophaeus
ENSODEG00000017998	-	99	85.052	ENSMAMG00000004279	lsm12b	99	85.052	Mastacembelus_armatus
ENSODEG00000017998	-	99	84.536	ENSMZEG00005005754	lsm12b	99	84.536	Maylandia_zebra
ENSODEG00000017998	-	100	97.949	ENSMICG00000037219	LSM12	100	97.949	Microcebus_murinus
ENSODEG00000017998	-	100	98.462	ENSMOCG00000019878	-	100	98.462	Microtus_ochrogaster
ENSODEG00000017998	-	100	82.564	ENSMOCG00000017015	-	86	82.564	Microtus_ochrogaster
ENSODEG00000017998	-	99	85.052	ENSMMOG00000020848	lsm12b	99	85.052	Mola_mola
ENSODEG00000017998	-	98	86.387	ENSMALG00000007578	lsm12b	97	86.387	Monopterus_albus
ENSODEG00000017998	-	100	97.949	MGP_CAROLIEiJ_G0017241	Lsm12	100	97.949	Mus_caroli
ENSODEG00000017998	-	100	98.462	ENSMUSG00000020922	Lsm12	100	98.462	Mus_musculus
ENSODEG00000017998	-	100	97.810	MGP_PahariEiJ_G0018371	Lsm12	100	98.165	Mus_pahari
ENSODEG00000017998	-	100	97.949	MGP_SPRETEiJ_G0018084	Lsm12	100	97.949	Mus_spretus
ENSODEG00000017998	-	100	97.949	ENSMLUG00000006391	LSM12	100	97.949	Myotis_lucifugus
ENSODEG00000017998	-	100	98.462	ENSNGAG00000001870	Lsm12	100	98.462	Nannospalax_galili
ENSODEG00000017998	-	100	65.842	ENSNGAG00000015429	-	100	65.842	Nannospalax_galili
ENSODEG00000017998	-	99	84.536	ENSNBRG00000006266	lsm12b	99	84.536	Neolamprologus_brichardi
ENSODEG00000017998	-	100	98.462	ENSNLEG00000005580	-	100	98.462	Nomascus_leucogenys
ENSODEG00000017998	-	85	96.970	ENSMEUG00000007501	-	100	96.970	Notamacropus_eugenii
ENSODEG00000017998	-	100	98.462	ENSOPRG00000008552	LSM12	100	98.462	Ochotona_princeps
ENSODEG00000017998	-	99	84.536	ENSONIG00000007933	lsm12b	99	84.536	Oreochromis_niloticus
ENSODEG00000017998	-	54	94.595	ENSOANG00000031724	-	100	88.889	Ornithorhynchus_anatinus
ENSODEG00000017998	-	99	90.826	ENSOCUG00000024823	-	100	90.722	Oryctolagus_cuniculus
ENSODEG00000017998	-	99	91.818	ENSOCUG00000027889	-	100	91.753	Oryctolagus_cuniculus
ENSODEG00000017998	-	100	98.165	ENSOCUG00000008566	-	100	96.465	Oryctolagus_cuniculus
ENSODEG00000017998	-	99	91.753	ENSOCUG00000021254	-	100	91.753	Oryctolagus_cuniculus
ENSODEG00000017998	-	99	85.052	ENSORLG00000011310	lsm12b	99	85.052	Oryzias_latipes
ENSODEG00000017998	-	99	85.052	ENSORLG00020002060	lsm12b	91	85.052	Oryzias_latipes_hni
ENSODEG00000017998	-	99	85.052	ENSORLG00015001647	lsm12b	91	85.052	Oryzias_latipes_hsok
ENSODEG00000017998	-	99	85.052	ENSOMEG00000006184	lsm12b	91	85.052	Oryzias_melastigma
ENSODEG00000017998	-	100	97.949	ENSOGAG00000010489	LSM12	100	97.949	Otolemur_garnettii
ENSODEG00000017998	-	100	98.165	ENSOARG00000006589	LSM12	100	95.025	Ovis_aries
ENSODEG00000017998	-	100	90.141	ENSPPAG00000034974	-	92	98.165	Pan_paniscus
ENSODEG00000017998	-	100	98.462	ENSPPRG00000023420	LSM12	100	98.462	Panthera_pardus
ENSODEG00000017998	-	81	96.396	ENSPTIG00000012704	-	82	98.693	Panthera_tigris_altaica
ENSODEG00000017998	-	100	96.350	ENSPTIG00000014850	-	100	96.350	Panthera_tigris_altaica
ENSODEG00000017998	-	100	98.462	ENSPTRG00000009261	LSM12	100	98.462	Pan_troglodytes
ENSODEG00000017998	-	100	98.462	ENSPANG00000021315	-	100	98.462	Papio_anubis
ENSODEG00000017998	-	99	77.320	ENSPKIG00000017932	-	99	77.320	Paramormyrops_kingsleyae
ENSODEG00000017998	-	99	85.052	ENSPKIG00000021058	lsm12b	99	85.052	Paramormyrops_kingsleyae
ENSODEG00000017998	-	99	84.021	ENSPMGG00000021344	lsm12b	99	84.021	Periophthalmus_magnuspinnatus
ENSODEG00000017998	-	100	98.462	ENSPEMG00000012199	Lsm12	100	98.462	Peromyscus_maniculatus_bairdii
ENSODEG00000017998	-	89	66.667	ENSPMAG00000005461	lsm12a	99	66.667	Petromyzon_marinus
ENSODEG00000017998	-	100	96.410	ENSPCIG00000020244	LSM12	100	96.410	Phascolarctos_cinereus
ENSODEG00000017998	-	99	82.990	ENSPFOG00000015930	lsm12b	99	82.990	Poecilia_formosa
ENSODEG00000017998	-	99	82.990	ENSPLAG00000021089	lsm12b	99	82.990	Poecilia_latipinna
ENSODEG00000017998	-	99	82.990	ENSPMEG00000012961	lsm12b	99	82.990	Poecilia_mexicana
ENSODEG00000017998	-	88	85.965	ENSPREG00000010236	lsm12b	95	85.965	Poecilia_reticulata
ENSODEG00000017998	-	100	98.462	ENSPPYG00000008344	LSM12	100	98.462	Pongo_abelii
ENSODEG00000017998	-	82	98.742	ENSPCAG00000008790	LSM12	100	98.742	Procavia_capensis
ENSODEG00000017998	-	100	98.462	ENSPCOG00000027951	LSM12	100	98.462	Propithecus_coquereli
ENSODEG00000017998	-	100	97.949	ENSPVAG00000013706	LSM12	100	97.949	Pteropus_vampyrus
ENSODEG00000017998	-	99	84.536	ENSPNYG00000003386	lsm12b	99	84.536	Pundamilia_nyererei
ENSODEG00000017998	-	97	77.895	ENSPNAG00000018435	lsm12a	97	77.895	Pygocentrus_nattereri
ENSODEG00000017998	-	100	83.163	ENSPNAG00000004186	lsm12b	100	83.163	Pygocentrus_nattereri
ENSODEG00000017998	-	100	98.462	ENSRNOG00000020894	Lsm12	100	98.462	Rattus_norvegicus
ENSODEG00000017998	-	100	98.462	ENSRBIG00000027910	LSM12	100	98.462	Rhinopithecus_bieti
ENSODEG00000017998	-	100	82.482	ENSRROG00000000537	-	100	82.482	Rhinopithecus_roxellana
ENSODEG00000017998	-	100	98.462	ENSRROG00000045530	-	100	98.462	Rhinopithecus_roxellana
ENSODEG00000017998	-	77	33.051	YHR121W	-	61	33.051	Saccharomyces_cerevisiae
ENSODEG00000017998	-	100	98.462	ENSSBOG00000025310	LSM12	100	98.462	Saimiri_boliviensis_boliviensis
ENSODEG00000017998	-	81	94.595	ENSSHAG00000014914	LSM12	100	94.304	Sarcophilus_harrisii
ENSODEG00000017998	-	99	86.082	ENSSFOG00015009612	lsm12	99	86.082	Scleropages_formosus
ENSODEG00000017998	-	99	82.990	ENSSFOG00015020392	lsm12a	99	82.990	Scleropages_formosus
ENSODEG00000017998	-	99	85.052	ENSSMAG00000008089	lsm12b	99	85.052	Scophthalmus_maximus
ENSODEG00000017998	-	99	85.052	ENSSDUG00000012711	lsm12b	99	85.052	Seriola_dumerili
ENSODEG00000017998	-	99	85.052	ENSSLDG00000007404	lsm12b	99	85.052	Seriola_lalandi_dorsalis
ENSODEG00000017998	-	81	96.396	ENSSARG00000005537	LSM12	100	98.039	Sorex_araneus
ENSODEG00000017998	-	100	94.872	ENSSPUG00000011984	LSM12	100	94.872	Sphenodon_punctatus
ENSODEG00000017998	-	99	85.567	ENSSPAG00000017058	lsm12b	99	85.567	Stegastes_partitus
ENSODEG00000017998	-	100	98.462	ENSSSCG00000032394	LSM12	100	98.462	Sus_scrofa
ENSODEG00000017998	-	99	85.455	ENSTRUG00000007121	lsm12b	99	84.021	Takifugu_rubripes
ENSODEG00000017998	-	99	85.455	ENSTNIG00000014436	lsm12b	99	84.536	Tetraodon_nigroviridis
ENSODEG00000017998	-	100	97.949	ENSTBEG00000012523	-	100	97.949	Tupaia_belangeri
ENSODEG00000017998	-	100	94.872	ENSTBEG00000012392	-	100	94.872	Tupaia_belangeri
ENSODEG00000017998	-	100	98.462	ENSTTRG00000010433	LSM12	100	98.462	Tursiops_truncatus
ENSODEG00000017998	-	100	98.462	ENSUAMG00000006313	LSM12	100	98.462	Ursus_americanus
ENSODEG00000017998	-	81	96.396	ENSUMAG00000012987	LSM12	90	95.570	Ursus_maritimus
ENSODEG00000017998	-	100	92.821	ENSVPAG00000011145	LSM12	100	92.821	Vicugna_pacos
ENSODEG00000017998	-	100	98.462	ENSVVUG00000017581	LSM12	100	98.462	Vulpes_vulpes
ENSODEG00000017998	-	80	82.569	ENSXETG00000003371	lsm12	77	64.375	Xenopus_tropicalis
ENSODEG00000017998	-	99	84.021	ENSXCOG00000003994	lsm12b	99	84.021	Xiphophorus_couchianus
ENSODEG00000017998	-	99	84.021	ENSXMAG00000020950	lsm12b	99	84.021	Xiphophorus_maculatus