EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000018137 (Gene tree)
Gene ID: 101575500
Gene Symbol: RPUSD3
Alias: MGC29784
Full Name: RNA pseudouridine synthase D3
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 4037 bases
Position: chrJH651523.1:12513553-12517589
Accession: 101575500
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000024793	PseudoU_synth_2	PF00849.22	1.8e-15	1	1
ENSODEP00000024794	PseudoU_synth_2	PF00849.22	2.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000025070	RPUSD3-201	855	XM_004625233	ENSODEP00000024793	284 (aa)	XP_004625290	-
ENSODET00000025071	RPUSD3-202	699	-	ENSODEP00000024794	232 (aa)	-	-

Gene Model

Click here to download ENSODEG00000018137's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000018137's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000018137	RPUSD3	89	31.250	ENSODEG00000004577	RPUSD4	67	31.387

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000018137	RPUSD3	90	78.544	ENSG00000156990	RPUSD3	85	73.984	Homo_sapiens
ENSODEG00000018137	RPUSD3	91	78.788	ENSAMEG00000016227	RPUSD3	75	78.788	Ailuropoda_melanoleuca
ENSODEG00000018137	RPUSD3	90	55.000	ENSACAG00000009836	RPUSD3	74	55.000	Anolis_carolinensis
ENSODEG00000018137	RPUSD3	64	77.124	ENSANAG00000038118	-	75	76.282	Aotus_nancymaae
ENSODEG00000018137	RPUSD3	65	78.065	ENSANAG00000019945	-	63	77.848	Aotus_nancymaae
ENSODEG00000018137	RPUSD3	68	54.634	ENSANAG00000007127	-	73	55.782	Aotus_nancymaae
ENSODEG00000018137	RPUSD3	91	77.652	ENSBTAG00000007968	RPUSD3	77	77.652	Bos_taurus
ENSODEG00000018137	RPUSD3	91	78.030	ENSCAFG00000029733	RPUSD3	75	78.030	Canis_familiaris
ENSODEG00000018137	RPUSD3	91	78.030	ENSCAFG00020008582	RPUSD3	80	78.030	Canis_lupus_dingo
ENSODEG00000018137	RPUSD3	91	77.652	ENSCHIG00000026027	RPUSD3	79	77.652	Capra_hircus
ENSODEG00000018137	RPUSD3	86	79.116	ENSTSYG00000009994	RPUSD3	74	78.313	Carlito_syrichta
ENSODEG00000018137	RPUSD3	91	87.072	ENSCAPG00000017559	RPUSD3	99	87.072	Cavia_aperea
ENSODEG00000018137	RPUSD3	99	75.389	ENSCPOG00000037956	RPUSD3	90	75.389	Cavia_porcellus
ENSODEG00000018137	RPUSD3	91	79.167	ENSCCAG00000029530	RPUSD3	76	79.167	Cebus_capucinus
ENSODEG00000018137	RPUSD3	90	80.843	ENSCATG00000036939	RPUSD3	74	80.843	Cercocebus_atys
ENSODEG00000018137	RPUSD3	90	80.843	ENSCSAG00000010506	RPUSD3	75	80.303	Chlorocebus_sabaeus
ENSODEG00000018137	RPUSD3	60	77.982	ENSCHOG00000010151	-	66	77.273	Choloepus_hoffmanni
ENSODEG00000018137	RPUSD3	90	52.490	ENSCPBG00000008825	RPUSD3	95	53.125	Chrysemys_picta_bellii
ENSODEG00000018137	RPUSD3	90	81.609	ENSCANG00000040711	RPUSD3	74	81.609	Colobus_angolensis_palliatus
ENSODEG00000018137	RPUSD3	90	75.479	ENSCGRG00001004923	Rpusd3	73	74.621	Cricetulus_griseus_chok1gshd
ENSODEG00000018137	RPUSD3	90	75.479	ENSCGRG00000018315	Rpusd3	77	74.621	Cricetulus_griseus_crigri
ENSODEG00000018137	RPUSD3	91	74.525	ENSDNOG00000039160	RPUSD3	70	74.525	Dasypus_novemcinctus
ENSODEG00000018137	RPUSD3	99	70.934	ENSDORG00000026827	Rpusd3	99	70.934	Dipodomys_ordii
ENSODEG00000018137	RPUSD3	91	75.000	ENSETEG00000006538	RPUSD3	75	75.000	Echinops_telfairi
ENSODEG00000018137	RPUSD3	70	36.842	ENSEBUG00000015605	RPUSD3	61	38.830	Eptatretus_burgeri
ENSODEG00000018137	RPUSD3	91	79.167	ENSEASG00005014160	RPUSD3	73	79.167	Equus_asinus_asinus
ENSODEG00000018137	RPUSD3	91	79.167	ENSECAG00000019988	RPUSD3	73	79.167	Equus_caballus
ENSODEG00000018137	RPUSD3	74	71.698	ENSEEUG00000007353	RPUSD3	60	71.698	Erinaceus_europaeus
ENSODEG00000018137	RPUSD3	91	78.788	ENSFCAG00000014199	RPUSD3	86	70.690	Felis_catus
ENSODEG00000018137	RPUSD3	90	48.276	ENSFALG00000012968	RPUSD3	95	48.276	Ficedula_albicollis
ENSODEG00000018137	RPUSD3	91	84.848	ENSFDAG00000008350	RPUSD3	81	84.848	Fukomys_damarensis
ENSODEG00000018137	RPUSD3	90	53.257	ENSGAGG00000007493	RPUSD3	82	54.406	Gopherus_agassizii
ENSODEG00000018137	RPUSD3	90	78.544	ENSGGOG00000013120	RPUSD3	74	78.544	Gorilla_gorilla
ENSODEG00000018137	RPUSD3	91	87.879	ENSHGLG00000011722	RPUSD3	68	87.879	Heterocephalus_glaber_female
ENSODEG00000018137	RPUSD3	91	87.879	ENSHGLG00100016038	RPUSD3	68	87.879	Heterocephalus_glaber_male
ENSODEG00000018137	RPUSD3	91	78.409	ENSSTOG00000002125	RPUSD3	75	78.409	Ictidomys_tridecemlineatus
ENSODEG00000018137	RPUSD3	91	72.348	ENSJJAG00000012679	Rpusd3	77	72.348	Jaculus_jaculus
ENSODEG00000018137	RPUSD3	91	77.652	ENSLAFG00000017501	RPUSD3	77	77.652	Loxodonta_africana
ENSODEG00000018137	RPUSD3	90	80.077	ENSMFAG00000032407	RPUSD3	74	80.077	Macaca_fascicularis
ENSODEG00000018137	RPUSD3	90	80.460	ENSMMUG00000010628	RPUSD3	82	80.460	Macaca_mulatta
ENSODEG00000018137	RPUSD3	90	80.843	ENSMNEG00000040308	RPUSD3	74	80.843	Macaca_nemestrina
ENSODEG00000018137	RPUSD3	90	80.843	ENSMLEG00000033940	RPUSD3	74	80.843	Mandrillus_leucophaeus
ENSODEG00000018137	RPUSD3	91	74.242	ENSMAUG00000015473	Rpusd3	77	74.242	Mesocricetus_auratus
ENSODEG00000018137	RPUSD3	91	79.167	ENSMICG00000002315	RPUSD3	77	79.167	Microcebus_murinus
ENSODEG00000018137	RPUSD3	91	73.485	ENSMOCG00000022613	Rpusd3	77	73.485	Microtus_ochrogaster
ENSODEG00000018137	RPUSD3	90	61.923	ENSMODG00000005210	RPUSD3	68	61.923	Monodelphis_domestica
ENSODEG00000018137	RPUSD3	91	71.970	MGP_CAROLIEiJ_G0028725	Rpusd3	77	71.970	Mus_caroli
ENSODEG00000018137	RPUSD3	91	74.242	ENSMUSG00000051169	Rpusd3	77	74.242	Mus_musculus
ENSODEG00000018137	RPUSD3	91	73.485	MGP_PahariEiJ_G0022476	Rpusd3	77	73.485	Mus_pahari
ENSODEG00000018137	RPUSD3	91	73.106	MGP_SPRETEiJ_G0029753	Rpusd3	77	73.106	Mus_spretus
ENSODEG00000018137	RPUSD3	91	79.167	ENSMPUG00000017132	RPUSD3	75	79.167	Mustela_putorius_furo
ENSODEG00000018137	RPUSD3	91	81.061	ENSMLUG00000006135	RPUSD3	76	81.061	Myotis_lucifugus
ENSODEG00000018137	RPUSD3	90	75.862	ENSNGAG00000023704	Rpusd3	78	75.862	Nannospalax_galili
ENSODEG00000018137	RPUSD3	90	63.985	ENSNLEG00000004214	RPUSD3	73	79.870	Nomascus_leucogenys
ENSODEG00000018137	RPUSD3	90	63.846	ENSMEUG00000013098	-	100	63.846	Notamacropus_eugenii
ENSODEG00000018137	RPUSD3	91	62.500	ENSOPRG00000002300	RPUSD3	75	62.500	Ochotona_princeps
ENSODEG00000018137	RPUSD3	88	48.235	ENSOANG00000012081	-	89	47.860	Ornithorhynchus_anatinus
ENSODEG00000018137	RPUSD3	91	65.299	ENSOCUG00000027885	RPUSD3	78	65.299	Oryctolagus_cuniculus
ENSODEG00000018137	RPUSD3	91	78.030	ENSOGAG00000012592	RPUSD3	84	78.030	Otolemur_garnettii
ENSODEG00000018137	RPUSD3	91	78.030	ENSOARG00000005928	RPUSD3	75	78.030	Ovis_aries
ENSODEG00000018137	RPUSD3	91	78.030	ENSPPAG00000038083	RPUSD3	75	78.030	Pan_paniscus
ENSODEG00000018137	RPUSD3	91	79.167	ENSPPRG00000024433	RPUSD3	75	79.167	Panthera_pardus
ENSODEG00000018137	RPUSD3	91	80.303	ENSPTIG00000006828	RPUSD3	77	80.303	Panthera_tigris_altaica
ENSODEG00000018137	RPUSD3	91	78.030	ENSPTRG00000051760	RPUSD3	75	78.030	Pan_troglodytes
ENSODEG00000018137	RPUSD3	90	80.843	ENSPANG00000023885	RPUSD3	75	80.303	Papio_anubis
ENSODEG00000018137	RPUSD3	91	74.242	ENSPEMG00000017245	Rpusd3	77	74.242	Peromyscus_maniculatus_bairdii
ENSODEG00000018137	RPUSD3	90	64.615	ENSPCIG00000021901	RPUSD3	76	64.615	Phascolarctos_cinereus
ENSODEG00000018137	RPUSD3	91	78.788	ENSPPYG00000013676	RPUSD3	75	78.788	Pongo_abelii
ENSODEG00000018137	RPUSD3	52	76.974	ENSPCAG00000013731	-	53	76.974	Procavia_capensis
ENSODEG00000018137	RPUSD3	91	79.924	ENSPCOG00000018314	RPUSD3	75	79.924	Propithecus_coquereli
ENSODEG00000018137	RPUSD3	91	78.030	ENSPVAG00000011107	RPUSD3	75	78.030	Pteropus_vampyrus
ENSODEG00000018137	RPUSD3	86	71.888	ENSRNOG00000009084	Rpusd3	78	71.888	Rattus_norvegicus
ENSODEG00000018137	RPUSD3	90	81.609	ENSRBIG00000041230	RPUSD3	74	81.609	Rhinopithecus_bieti
ENSODEG00000018137	RPUSD3	90	81.609	ENSRROG00000043328	RPUSD3	74	81.609	Rhinopithecus_roxellana
ENSODEG00000018137	RPUSD3	90	78.544	ENSSBOG00000036106	RPUSD3	75	78.544	Saimiri_boliviensis_boliviensis
ENSODEG00000018137	RPUSD3	90	64.231	ENSSHAG00000015536	RPUSD3	84	63.846	Sarcophilus_harrisii
ENSODEG00000018137	RPUSD3	91	78.788	ENSSSCG00000011555	RPUSD3	75	78.788	Sus_scrofa
ENSODEG00000018137	RPUSD3	80	49.138	ENSTGUG00000008744	RPUSD3	93	48.611	Taeniopygia_guttata
ENSODEG00000018137	RPUSD3	69	76.119	ENSTBEG00000000176	RPUSD3	69	76.119	Tupaia_belangeri
ENSODEG00000018137	RPUSD3	91	78.030	ENSTTRG00000007544	RPUSD3	75	78.030	Tursiops_truncatus
ENSODEG00000018137	RPUSD3	91	79.167	ENSUAMG00000011354	RPUSD3	82	79.167	Ursus_americanus
ENSODEG00000018137	RPUSD3	91	79.167	ENSUMAG00000018830	RPUSD3	75	79.167	Ursus_maritimus
ENSODEG00000018137	RPUSD3	91	78.409	ENSVVUG00000023735	RPUSD3	77	78.409	Vulpes_vulpes
ENSODEG00000018137	RPUSD3	90	46.565	ENSXETG00000023546	rpusd3	93	46.565	Xenopus_tropicalis