EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000018283 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 789 bases
Position: chrJH651523.1:23356852-23357640
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000024991	zf-CCCH	PF00642.24	3.5e-17	1	2
ENSODEP00000024991	zf-CCCH	PF00642.24	3.5e-17	2	2
ENSODEP00000024992	zf-CCCH	PF00642.24	2.7e-14	1	2
ENSODEP00000024992	zf-CCCH	PF00642.24	2.7e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000025269	-	732	-	ENSODEP00000024991	243 (aa)	-	-
ENSODET00000025270	-	660	-	ENSODEP00000024992	219 (aa)	-	-

Gene Model

Click here to download ENSODEG00000018283's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000018283's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000018283	-	89	78.774	ENSODEG00000011181	-	98	78.774
ENSODEG00000018283	-	91	62.257	ENSODEG00000009779	-	98	62.257

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000018283	-	91	84.583	ENSG00000160917	CPSF4	100	92.857	Homo_sapiens
ENSODEG00000018283	-	60	59.538	ENSAPOG00000004921	cpsf4	98	59.538	Acanthochromis_polyacanthus
ENSODEG00000018283	-	91	74.340	ENSAMEG00000006252	CPSF4	99	76.604	Ailuropoda_melanoleuca
ENSODEG00000018283	-	91	74.583	ENSACIG00000009248	cpsf4	98	75.417	Amphilophus_citrinellus
ENSODEG00000018283	-	91	69.349	ENSAOCG00000019616	cpsf4	98	69.349	Amphiprion_ocellaris
ENSODEG00000018283	-	91	69.349	ENSAPEG00000011679	cpsf4	98	69.349	Amphiprion_percula
ENSODEG00000018283	-	91	72.764	ENSATEG00000007010	cpsf4	98	72.016	Anabas_testudineus
ENSODEG00000018283	-	91	70.566	ENSACAG00000012941	CPSF4	88	72.075	Anolis_carolinensis
ENSODEG00000018283	-	89	78.774	ENSANAG00000021360	CPSF4	98	78.774	Aotus_nancymaae
ENSODEG00000018283	-	91	69.167	ENSACLG00000010374	cpsf4	98	69.167	Astatotilapia_calliptera
ENSODEG00000018283	-	91	67.293	ENSAMXG00000031647	cpsf4	99	68.421	Astyanax_mexicanus
ENSODEG00000018283	-	91	83.333	ENSBTAG00000002090	CPSF4	98	83.333	Bos_taurus
ENSODEG00000018283	-	89	78.774	ENSCJAG00000015826	CPSF4	98	78.774	Callithrix_jacchus
ENSODEG00000018283	-	89	78.774	ENSCAFG00000015036	CPSF4	100	81.707	Canis_familiaris
ENSODEG00000018283	-	91	74.806	ENSCAFG00020014462	CPSF4	98	76.744	Canis_lupus_dingo
ENSODEG00000018283	-	89	77.830	ENSCHIG00000014313	CPSF4	98	77.830	Capra_hircus
ENSODEG00000018283	-	78	84.615	ENSTSYG00000008195	-	97	78.281	Carlito_syrichta
ENSODEG00000018283	-	91	77.178	ENSTSYG00000014604	-	98	77.178	Carlito_syrichta
ENSODEG00000018283	-	91	84.167	ENSTSYG00000005712	-	98	84.167	Carlito_syrichta
ENSODEG00000018283	-	73	83.851	ENSCAPG00000013881	CPSF4	85	79.907	Cavia_aperea
ENSODEG00000018283	-	91	84.583	ENSCPOG00000001783	CPSF4	98	84.583	Cavia_porcellus
ENSODEG00000018283	-	89	78.774	ENSCCAG00000028291	CPSF4	98	78.774	Cebus_capucinus
ENSODEG00000018283	-	91	77.083	ENSCATG00000038440	CPSF4	98	78.774	Cercocebus_atys
ENSODEG00000018283	-	89	78.774	ENSCLAG00000007050	CPSF4	98	78.774	Chinchilla_lanigera
ENSODEG00000018283	-	91	73.962	ENSCSAG00000017795	CPSF4	99	76.604	Chlorocebus_sabaeus
ENSODEG00000018283	-	60	69.277	ENSCPBG00000010269	-	100	69.277	Chrysemys_picta_bellii
ENSODEG00000018283	-	75	74.057	ENSCPBG00000020869	CPSF4	98	75.943	Chrysemys_picta_bellii
ENSODEG00000018283	-	88	48.031	ENSCING00000021080	-	97	48.031	Ciona_intestinalis
ENSODEG00000018283	-	88	45.936	ENSCSAVG00000011469	-	97	45.196	Ciona_savignyi
ENSODEG00000018283	-	91	77.500	ENSCANG00000019384	CPSF4	98	78.774	Colobus_angolensis_palliatus
ENSODEG00000018283	-	91	84.583	ENSCGRG00001024184	Cpsf4	98	84.583	Cricetulus_griseus_chok1gshd
ENSODEG00000018283	-	89	78.774	ENSCGRG00000013892	Cpsf4	98	78.774	Cricetulus_griseus_crigri
ENSODEG00000018283	-	91	67.816	ENSCSEG00000019055	cpsf4	98	67.816	Cynoglossus_semilaevis
ENSODEG00000018283	-	91	68.582	ENSCVAG00000016528	cpsf4	98	68.582	Cyprinodon_variegatus
ENSODEG00000018283	-	91	67.790	ENSDARG00000020217	cpsf4	99	68.539	Danio_rerio
ENSODEG00000018283	-	91	73.962	ENSDNOG00000006344	CPSF4	99	76.226	Dasypus_novemcinctus
ENSODEG00000018283	-	75	76.526	ENSDORG00000000742	Cpsf4	98	79.343	Dipodomys_ordii
ENSODEG00000018283	-	93	43.522	FBgn0015621	Clp	99	44.898	Drosophila_melanogaster
ENSODEG00000018283	-	60	82.424	ENSETEG00000002608	CPSF4	61	82.424	Echinops_telfairi
ENSODEG00000018283	-	91	60.905	ENSEBUG00000012552	cpsf4	98	59.336	Eptatretus_burgeri
ENSODEG00000018283	-	91	84.583	ENSEASG00005002487	CPSF4	98	84.583	Equus_asinus_asinus
ENSODEG00000018283	-	89	78.774	ENSECAG00000007525	CPSF4	98	78.774	Equus_caballus
ENSODEG00000018283	-	59	96.429	ENSEEUG00000002158	CPSF4	66	96.429	Erinaceus_europaeus
ENSODEG00000018283	-	91	68.284	ENSELUG00000011481	cpsf4	99	67.537	Esox_lucius
ENSODEG00000018283	-	89	78.774	ENSFCAG00000015070	CPSF4	98	78.774	Felis_catus
ENSODEG00000018283	-	60	57.962	ENSFALG00000012906	-	100	57.962	Ficedula_albicollis
ENSODEG00000018283	-	91	80.000	ENSFALG00000013799	CPSF4	98	80.000	Ficedula_albicollis
ENSODEG00000018283	-	78	77.419	ENSFDAG00000014092	CPSF4	98	77.419	Fukomys_damarensis
ENSODEG00000018283	-	91	67.816	ENSFHEG00000010880	cpsf4	98	67.816	Fundulus_heteroclitus
ENSODEG00000018283	-	91	68.504	ENSGMOG00000002330	cpsf4	98	68.504	Gadus_morhua
ENSODEG00000018283	-	91	80.417	ENSGALG00000004714	CPSF4	98	80.417	Gallus_gallus
ENSODEG00000018283	-	87	30.047	ENSGALG00000004441	-	89	34.884	Gallus_gallus
ENSODEG00000018283	-	91	68.077	ENSGAFG00000010580	cpsf4	98	68.077	Gambusia_affinis
ENSODEG00000018283	-	91	69.600	ENSGACG00000007792	cpsf4	98	69.600	Gasterosteus_aculeatus
ENSODEG00000018283	-	91	72.075	ENSGAGG00000021835	CPSF4	99	73.585	Gopherus_agassizii
ENSODEG00000018283	-	60	69.697	ENSGAGG00000020579	-	92	69.697	Gopherus_agassizii
ENSODEG00000018283	-	89	78.774	ENSGGOG00000015131	CPSF4	98	78.774	Gorilla_gorilla
ENSODEG00000018283	-	91	68.582	ENSHBUG00000013699	cpsf4	98	68.582	Haplochromis_burtoni
ENSODEG00000018283	-	89	78.302	ENSHGLG00000017150	CPSF4	98	78.302	Heterocephalus_glaber_female
ENSODEG00000018283	-	75	80.723	ENSHGLG00100009215	-	91	80.723	Heterocephalus_glaber_male
ENSODEG00000018283	-	89	54.976	ENSHGLG00100017302	-	98	54.976	Heterocephalus_glaber_male
ENSODEG00000018283	-	91	67.816	ENSHCOG00000004397	cpsf4	98	67.816	Hippocampus_comes
ENSODEG00000018283	-	91	67.416	ENSIPUG00000017147	cpsf4	99	67.790	Ictalurus_punctatus
ENSODEG00000018283	-	91	84.167	ENSSTOG00000001688	CPSF4	98	84.167	Ictidomys_tridecemlineatus
ENSODEG00000018283	-	89	78.774	ENSJJAG00000019426	Cpsf4	98	78.774	Jaculus_jaculus
ENSODEG00000018283	-	91	67.816	ENSKMAG00000015642	cpsf4	98	67.050	Kryptolebias_marmoratus
ENSODEG00000018283	-	91	69.925	ENSLACG00000010938	CPSF4	99	69.925	Latimeria_chalumnae
ENSODEG00000018283	-	91	56.198	ENSLACG00000018470	-	98	55.785	Latimeria_chalumnae
ENSODEG00000018283	-	91	69.057	ENSLOCG00000004814	cpsf4	99	71.698	Lepisosteus_oculatus
ENSODEG00000018283	-	91	73.962	ENSLAFG00000000159	CPSF4	98	83.851	Loxodonta_africana
ENSODEG00000018283	-	91	77.500	ENSMFAG00000001462	CPSF4	98	90.374	Macaca_fascicularis
ENSODEG00000018283	-	89	78.774	ENSMMUG00000019191	CPSF4	98	78.774	Macaca_mulatta
ENSODEG00000018283	-	91	77.500	ENSMNEG00000032306	CPSF4	98	78.774	Macaca_nemestrina
ENSODEG00000018283	-	91	77.083	ENSMLEG00000034721	CPSF4	98	78.774	Mandrillus_leucophaeus
ENSODEG00000018283	-	91	68.321	ENSMAMG00000006244	cpsf4	98	68.321	Mastacembelus_armatus
ENSODEG00000018283	-	91	68.582	ENSMZEG00005007515	cpsf4	98	68.582	Maylandia_zebra
ENSODEG00000018283	-	78	85.567	ENSMGAG00000004235	CPSF4	92	85.567	Meleagris_gallopavo
ENSODEG00000018283	-	89	78.774	ENSMAUG00000021253	Cpsf4	98	78.774	Mesocricetus_auratus
ENSODEG00000018283	-	89	78.774	ENSMICG00000017429	CPSF4	98	78.774	Microcebus_murinus
ENSODEG00000018283	-	89	78.774	ENSMOCG00000014901	Cpsf4	98	78.774	Microtus_ochrogaster
ENSODEG00000018283	-	91	68.321	ENSMMOG00000001813	cpsf4	95	80.625	Mola_mola
ENSODEG00000018283	-	91	72.830	ENSMODG00000001367	CPSF4	99	75.094	Monodelphis_domestica
ENSODEG00000018283	-	91	72.177	ENSMALG00000012611	cpsf4	98	72.581	Monopterus_albus
ENSODEG00000018283	-	91	84.583	MGP_CAROLIEiJ_G0028012	Cpsf4	98	84.583	Mus_caroli
ENSODEG00000018283	-	91	84.583	ENSMUSG00000029625	Cpsf4	98	84.583	Mus_musculus
ENSODEG00000018283	-	91	84.583	MGP_PahariEiJ_G0024581	Cpsf4	98	84.583	Mus_pahari
ENSODEG00000018283	-	91	85.000	MGP_SPRETEiJ_G0029013	Cpsf4	98	85.000	Mus_spretus
ENSODEG00000018283	-	91	74.340	ENSMPUG00000016508	CPSF4	99	76.604	Mustela_putorius_furo
ENSODEG00000018283	-	78	89.691	ENSMLUG00000010980	CPSF4	92	89.691	Myotis_lucifugus
ENSODEG00000018283	-	89	78.302	ENSNGAG00000001567	Cpsf4	98	78.302	Nannospalax_galili
ENSODEG00000018283	-	81	67.511	ENSNBRG00000003943	cpsf4	96	67.511	Neolamprologus_brichardi
ENSODEG00000018283	-	91	84.583	ENSNLEG00000011074	CPSF4	98	84.583	Nomascus_leucogenys
ENSODEG00000018283	-	91	72.830	ENSMEUG00000006955	CPSF4	99	75.094	Notamacropus_eugenii
ENSODEG00000018283	-	91	74.340	ENSOPRG00000013663	CPSF4	99	76.604	Ochotona_princeps
ENSODEG00000018283	-	91	68.582	ENSONIG00000008495	cpsf4	98	68.582	Oreochromis_niloticus
ENSODEG00000018283	-	88	51.331	ENSOANG00000009568	-	97	50.951	Ornithorhynchus_anatinus
ENSODEG00000018283	-	78	77.523	ENSOANG00000007729	CPSF4	93	77.523	Ornithorhynchus_anatinus
ENSODEG00000018283	-	91	73.962	ENSOCUG00000002437	CPSF4	69	76.226	Oryctolagus_cuniculus
ENSODEG00000018283	-	91	68.966	ENSORLG00000022798	cpsf4	98	68.966	Oryzias_latipes
ENSODEG00000018283	-	91	68.966	ENSORLG00020008548	cpsf4	98	68.966	Oryzias_latipes_hni
ENSODEG00000018283	-	91	68.966	ENSORLG00015019575	cpsf4	98	68.966	Oryzias_latipes_hsok
ENSODEG00000018283	-	91	67.433	ENSOMEG00000005176	cpsf4	98	67.433	Oryzias_melastigma
ENSODEG00000018283	-	91	74.340	ENSOGAG00000010884	CPSF4	99	76.981	Otolemur_garnettii
ENSODEG00000018283	-	91	65.799	ENSOARG00000018668	CPSF4	99	65.056	Ovis_aries
ENSODEG00000018283	-	89	78.302	ENSPPAG00000043355	CPSF4	98	78.302	Pan_paniscus
ENSODEG00000018283	-	89	78.774	ENSPPRG00000003134	CPSF4	98	78.774	Panthera_pardus
ENSODEG00000018283	-	78	77.169	ENSPTIG00000005604	CPSF4	81	79.909	Panthera_tigris_altaica
ENSODEG00000018283	-	89	78.302	ENSPTRG00000019453	CPSF4	98	78.302	Pan_troglodytes
ENSODEG00000018283	-	91	77.500	ENSPANG00000023123	CPSF4	98	78.774	Papio_anubis
ENSODEG00000018283	-	91	68.148	ENSPKIG00000014278	cpsf4	99	68.148	Paramormyrops_kingsleyae
ENSODEG00000018283	-	76	73.364	ENSPSIG00000011229	CPSF4	99	75.234	Pelodiscus_sinensis
ENSODEG00000018283	-	74	63.784	ENSPSIG00000018198	-	95	62.500	Pelodiscus_sinensis
ENSODEG00000018283	-	91	74.138	ENSPMGG00000017735	cpsf4	98	72.650	Periophthalmus_magnuspinnatus
ENSODEG00000018283	-	89	78.774	ENSPEMG00000004508	Cpsf4	98	78.774	Peromyscus_maniculatus_bairdii
ENSODEG00000018283	-	91	72.830	ENSPCIG00000024776	CPSF4	99	75.094	Phascolarctos_cinereus
ENSODEG00000018283	-	91	68.077	ENSPFOG00000014912	cpsf4	98	68.077	Poecilia_formosa
ENSODEG00000018283	-	91	67.355	ENSPLAG00000009599	cpsf4	98	66.942	Poecilia_latipinna
ENSODEG00000018283	-	91	68.077	ENSPMEG00000009790	cpsf4	98	68.077	Poecilia_mexicana
ENSODEG00000018283	-	91	67.308	ENSPREG00000018166	cpsf4	98	65.116	Poecilia_reticulata
ENSODEG00000018283	-	78	75.799	ENSPPYG00000017378	CPSF4	94	78.995	Pongo_abelii
ENSODEG00000018283	-	91	73.208	ENSPCAG00000001892	CPSF4	99	75.472	Procavia_capensis
ENSODEG00000018283	-	89	78.302	ENSPCOG00000012771	CPSF4	98	78.302	Propithecus_coquereli
ENSODEG00000018283	-	91	72.453	ENSPVAG00000007531	CPSF4	99	74.717	Pteropus_vampyrus
ENSODEG00000018283	-	91	68.582	ENSPNYG00000018559	cpsf4	98	68.582	Pundamilia_nyererei
ENSODEG00000018283	-	91	69.173	ENSPNAG00000003736	cpsf4	99	69.925	Pygocentrus_nattereri
ENSODEG00000018283	-	91	84.167	ENSRNOG00000000985	Cpsf4	98	84.167	Rattus_norvegicus
ENSODEG00000018283	-	75	83.735	ENSRBIG00000033886	CPSF4	91	83.735	Rhinopithecus_bieti
ENSODEG00000018283	-	91	84.583	ENSRROG00000040431	CPSF4	98	84.583	Rhinopithecus_roxellana
ENSODEG00000018283	-	89	78.774	ENSSBOG00000020493	CPSF4	98	90.374	Saimiri_boliviensis_boliviensis
ENSODEG00000018283	-	91	72.830	ENSSHAG00000011533	CPSF4	99	75.094	Sarcophilus_harrisii
ENSODEG00000018283	-	91	69.118	ENSSFOG00015007883	cpsf4	99	69.118	Scleropages_formosus
ENSODEG00000018283	-	91	73.444	ENSSMAG00000006374	cpsf4	98	73.444	Scophthalmus_maximus
ENSODEG00000018283	-	91	68.702	ENSSDUG00000018887	cpsf4	98	68.821	Seriola_dumerili
ENSODEG00000018283	-	91	68.702	ENSSLDG00000019078	cpsf4	98	68.821	Seriola_lalandi_dorsalis
ENSODEG00000018283	-	78	77.169	ENSSARG00000012416	CPSF4	94	80.365	Sorex_araneus
ENSODEG00000018283	-	91	72.453	ENSSPUG00000003549	CPSF4	99	70.943	Sphenodon_punctatus
ENSODEG00000018283	-	88	54.936	ENSSPUG00000014803	-	97	50.806	Sphenodon_punctatus
ENSODEG00000018283	-	91	74.167	ENSSPAG00000006174	cpsf4	98	74.167	Stegastes_partitus
ENSODEG00000018283	-	91	85.000	ENSSSCG00000026896	CPSF4	98	85.000	Sus_scrofa
ENSODEG00000018283	-	91	78.926	ENSTGUG00000007552	CPSF4	98	78.926	Taeniopygia_guttata
ENSODEG00000018283	-	91	67.181	ENSTRUG00000024220	cpsf4	98	67.181	Takifugu_rubripes
ENSODEG00000018283	-	91	66.409	ENSTNIG00000006265	cpsf4	98	67.568	Tetraodon_nigroviridis
ENSODEG00000018283	-	78	68.493	ENSTBEG00000011406	CPSF4	93	68.493	Tupaia_belangeri
ENSODEG00000018283	-	65	83.616	ENSTTRG00000003007	CPSF4	66	83.616	Tursiops_truncatus
ENSODEG00000018283	-	83	84.234	ENSUAMG00000008051	CPSF4	85	84.234	Ursus_americanus
ENSODEG00000018283	-	91	84.167	ENSUMAG00000009474	CPSF4	98	84.167	Ursus_maritimus
ENSODEG00000018283	-	91	84.167	ENSVVUG00000008824	CPSF4	98	84.167	Vulpes_vulpes
ENSODEG00000018283	-	91	66.909	ENSXETG00000009892	cpsf4	99	66.545	Xenopus_tropicalis
ENSODEG00000018283	-	91	52.809	ENSXETG00000004641	cpsf4l	99	52.060	Xenopus_tropicalis
ENSODEG00000018283	-	91	68.462	ENSXCOG00000016040	cpsf4	98	68.462	Xiphophorus_couchianus
ENSODEG00000018283	-	91	68.077	ENSXMAG00000024670	cpsf4	98	68.077	Xiphophorus_maculatus