EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000019012 (Gene tree)
Gene ID: 101583064
Gene Symbol: -
Alias: -
Full Name: paraspeckle component 1-like
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 1539 bases
Position: chrJH651678.1:95423-96961
Accession: 101583064
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000025712	RRM_1	PF00076.22	2.2e-31	1	2
ENSODEP00000025712	RRM_1	PF00076.22	2.2e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000026077	-	1539	XM_012517312	ENSODEP00000025712	512 (aa)	XP_012372766	-

Gene Model

Click here to download ENSODEG00000019012's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000019012's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000019012	-	92	51.653	ENSODEG00000002224	-	89	53.433
ENSODEG00000019012	-	76	53.102	ENSODEG00000005485	SFPQ	56	63.701
ENSODEG00000019012	-	100	80.739	ENSODEG00000007817	-	100	80.545
ENSODEG00000019012	-	54	55.109	ENSODEG00000004982	-	69	53.220
ENSODEG00000019012	-	91	49.272	ENSODEG00000002994	-	76	59.003
ENSODEG00000019012	-	89	36.111	ENSODEG00000000530	-	72	42.105
ENSODEG00000019012	-	74	51.151	ENSODEG00000011878	-	78	53.823

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000019012	-	100	85.822	ENSG00000121390	PSPC1	100	90.726	Homo_sapiens
ENSODEG00000019012	-	88	65.828	ENSAPOG00000015946	pspc1	88	63.941	Acanthochromis_polyacanthus
ENSODEG00000019012	-	100	86.590	ENSAMEG00000017420	PSPC1	100	85.249	Ailuropoda_melanoleuca
ENSODEG00000019012	-	99	54.323	ENSACIG00000018695	pspc1	87	56.394	Amphilophus_citrinellus
ENSODEG00000019012	-	88	65.344	ENSAOCG00000005279	pspc1	88	63.257	Amphiprion_ocellaris
ENSODEG00000019012	-	88	65.966	ENSAPEG00000015927	pspc1	88	63.866	Amphiprion_percula
ENSODEG00000019012	-	99	53.717	ENSATEG00000004878	pspc1	100	52.602	Anabas_testudineus
ENSODEG00000019012	-	89	55.675	ENSAPLG00000003643	SFPQ	83	54.158	Anas_platyrhynchos
ENSODEG00000019012	-	77	82.367	ENSAPLG00000006246	PSPC1	100	80.676	Anas_platyrhynchos
ENSODEG00000019012	-	90	50.104	ENSACAG00000013307	-	56	59.945	Anolis_carolinensis
ENSODEG00000019012	-	89	82.803	ENSACAG00000002093	PSPC1	88	81.529	Anolis_carolinensis
ENSODEG00000019012	-	100	85.958	ENSANAG00000000059	PSPC1	98	90.104	Aotus_nancymaae
ENSODEG00000019012	-	99	54.389	ENSACLG00000027220	pspc1	100	53.788	Astatotilapia_calliptera
ENSODEG00000019012	-	99	60.110	ENSAMXG00000036881	pspc1	89	63.655	Astyanax_mexicanus
ENSODEG00000019012	-	100	85.795	ENSBTAG00000003934	PSPC1	100	84.645	Bos_taurus
ENSODEG00000019012	-	100	85.958	ENSCJAG00000004554	PSPC1	100	85.249	Callithrix_jacchus
ENSODEG00000019012	-	100	84.820	ENSCAFG00020002009	PSPC1	98	88.802	Canis_lupus_dingo
ENSODEG00000019012	-	100	85.795	ENSCHIG00000016708	PSPC1	100	84.645	Capra_hircus
ENSODEG00000019012	-	80	79.808	ENSTSYG00000032882	PSPC1	93	79.469	Carlito_syrichta
ENSODEG00000019012	-	100	88.868	ENSCPOG00000000395	PSPC1	98	91.123	Cavia_porcellus
ENSODEG00000019012	-	100	85.958	ENSCCAG00000033498	PSPC1	100	85.249	Cebus_capucinus
ENSODEG00000019012	-	100	84.688	ENSCATG00000036434	PSPC1	99	88.553	Cercocebus_atys
ENSODEG00000019012	-	76	87.500	ENSCLAG00000005241	PSPC1	89	85.500	Chinchilla_lanigera
ENSODEG00000019012	-	100	79.962	ENSCHOG00000008913	PSPC1	100	79.198	Choloepus_hoffmanni
ENSODEG00000019012	-	99	78.212	ENSCPBG00000020859	PSPC1	89	82.390	Chrysemys_picta_bellii
ENSODEG00000019012	-	78	77.612	ENSCANG00000018948	PSPC1	87	93.893	Colobus_angolensis_palliatus
ENSODEG00000019012	-	100	85.444	ENSCGRG00001018368	Pspc1	100	84.160	Cricetulus_griseus_chok1gshd
ENSODEG00000019012	-	100	85.444	ENSCGRG00000011724	Pspc1	100	84.160	Cricetulus_griseus_crigri
ENSODEG00000019012	-	87	60.907	ENSCVAG00000007679	-	86	58.747	Cyprinodon_variegatus
ENSODEG00000019012	-	99	60.600	ENSDARG00000006621	pspc1	77	72.222	Danio_rerio
ENSODEG00000019012	-	100	85.066	ENSDNOG00000011078	PSPC1	100	84.542	Dasypus_novemcinctus
ENSODEG00000019012	-	100	83.588	ENSDORG00000016050	Pspc1	100	81.489	Dipodomys_ordii
ENSODEG00000019012	-	59	44.615	ENSEBUG00000010133	pspc1	77	45.918	Eptatretus_burgeri
ENSODEG00000019012	-	88	53.926	ENSEBUG00000003964	-	62	66.474	Eptatretus_burgeri
ENSODEG00000019012	-	100	85.769	ENSEASG00005000119	PSPC1	99	86.563	Equus_asinus_asinus
ENSODEG00000019012	-	100	85.769	ENSECAG00000017286	PSPC1	99	86.563	Equus_caballus
ENSODEG00000019012	-	62	79.310	ENSEEUG00000011288	-	61	79.310	Erinaceus_europaeus
ENSODEG00000019012	-	88	65.180	ENSELUG00000003746	pspc1	78	76.758	Esox_lucius
ENSODEG00000019012	-	100	87.097	ENSFCAG00000027841	PSPC1	98	88.542	Felis_catus
ENSODEG00000019012	-	89	84.277	ENSFALG00000008750	PSPC1	100	76.766	Ficedula_albicollis
ENSODEG00000019012	-	100	86.372	ENSFDAG00000002617	PSPC1	100	84.645	Fukomys_damarensis
ENSODEG00000019012	-	88	61.290	ENSGMOG00000015074	pspc1	76	66.998	Gadus_morhua
ENSODEG00000019012	-	100	77.593	ENSGALG00000017142	PSPC1	100	76.735	Gallus_gallus
ENSODEG00000019012	-	66	70.317	ENSGAFG00000006327	pspc1	67	70.462	Gambusia_affinis
ENSODEG00000019012	-	88	60.645	ENSGACG00000014901	pspc1	92	66.163	Gasterosteus_aculeatus
ENSODEG00000019012	-	99	78.026	ENSGAGG00000019164	PSPC1	89	82.390	Gopherus_agassizii
ENSODEG00000019012	-	92	54.132	ENSGAGG00000017325	-	67	53.632	Gopherus_agassizii
ENSODEG00000019012	-	100	86.011	ENSGGOG00000003414	PSPC1	98	88.601	Gorilla_gorilla
ENSODEG00000019012	-	99	59.888	ENSHBUG00000001139	pspc1	100	58.226	Haplochromis_burtoni
ENSODEG00000019012	-	100	88.676	ENSHGLG00000018811	PSPC1	100	87.140	Heterocephalus_glaber_female
ENSODEG00000019012	-	67	89.826	ENSHGLG00100007962	PSPC1	98	90.029	Heterocephalus_glaber_male
ENSODEG00000019012	-	79	61.631	ENSHCOG00000013251	pspc1	81	65.301	Hippocampus_comes
ENSODEG00000019012	-	99	62.243	ENSIPUG00000013192	pspc1	88	66.314	Ictalurus_punctatus
ENSODEG00000019012	-	100	85.633	ENSSTOG00000026833	PSPC1	98	88.601	Ictidomys_tridecemlineatus
ENSODEG00000019012	-	100	84.688	ENSJJAG00000018334	Pspc1	100	83.969	Jaculus_jaculus
ENSODEG00000019012	-	88	52.527	ENSKMAG00000013525	-	84	50.109	Kryptolebias_marmoratus
ENSODEG00000019012	-	92	60.392	ENSLBEG00000004474	pspc1	88	56.652	Labrus_bergylta
ENSODEG00000019012	-	99	67.093	ENSLACG00000010762	PSPC1	88	75.906	Latimeria_chalumnae
ENSODEG00000019012	-	99	71.238	ENSLOCG00000010832	pspc1	99	69.714	Lepisosteus_oculatus
ENSODEG00000019012	-	100	85.255	ENSLAFG00000010968	PSPC1	100	83.969	Loxodonta_africana
ENSODEG00000019012	-	100	84.688	ENSMFAG00000032728	PSPC1	99	88.553	Macaca_fascicularis
ENSODEG00000019012	-	100	84.688	ENSMMUG00000020262	PSPC1	99	88.553	Macaca_mulatta
ENSODEG00000019012	-	100	84.688	ENSMNEG00000027401	PSPC1	99	88.553	Macaca_nemestrina
ENSODEG00000019012	-	76	86.420	ENSMLEG00000039043	PSPC1	94	85.250	Mandrillus_leucophaeus
ENSODEG00000019012	-	91	62.222	ENSMAMG00000004333	pspc1	87	59.188	Mastacembelus_armatus
ENSODEG00000019012	-	99	54.389	ENSMZEG00005005726	pspc1	100	53.788	Maylandia_zebra
ENSODEG00000019012	-	78	82.212	ENSMGAG00000015134	PSPC1	100	80.529	Meleagris_gallopavo
ENSODEG00000019012	-	88	87.826	ENSMAUG00000021067	Pspc1	99	87.391	Mesocricetus_auratus
ENSODEG00000019012	-	100	85.199	ENSMICG00000013970	PSPC1	99	88.286	Microcebus_murinus
ENSODEG00000019012	-	100	84.688	ENSMOCG00000006060	Pspc1	100	83.588	Microtus_ochrogaster
ENSODEG00000019012	-	66	49.711	ENSMMOG00000004352	pspc1	59	53.231	Mola_mola
ENSODEG00000019012	-	88	88.961	ENSMODG00000008029	PSPC1	75	87.879	Monodelphis_domestica
ENSODEG00000019012	-	88	64.240	ENSMALG00000008914	pspc1	88	63.291	Monopterus_albus
ENSODEG00000019012	-	100	84.717	MGP_CAROLIEiJ_G0019341	Pspc1	99	87.527	Mus_caroli
ENSODEG00000019012	-	100	84.906	ENSMUSG00000021938	Pspc1	99	87.500	Mus_musculus
ENSODEG00000019012	-	100	84.717	MGP_PahariEiJ_G0030359	Pspc1	99	87.527	Mus_pahari
ENSODEG00000019012	-	100	84.717	MGP_SPRETEiJ_G0020232	Pspc1	99	87.284	Mus_spretus
ENSODEG00000019012	-	100	87.287	ENSMPUG00000013347	PSPC1	100	85.441	Mustela_putorius_furo
ENSODEG00000019012	-	100	85.283	ENSMLUG00000017663	PSPC1	100	83.810	Myotis_lucifugus
ENSODEG00000019012	-	100	84.688	ENSNGAG00000011271	Pspc1	100	83.588	Nannospalax_galili
ENSODEG00000019012	-	73	63.517	ENSNBRG00000014059	pspc1	92	63.185	Neolamprologus_brichardi
ENSODEG00000019012	-	100	84.877	ENSNLEG00000001294	PSPC1	100	84.924	Nomascus_leucogenys
ENSODEG00000019012	-	68	88.281	ENSMEUG00000000476	PSPC1	79	89.453	Notamacropus_eugenii
ENSODEG00000019012	-	99	60.149	ENSONIG00000012010	pspc1	99	58.487	Oreochromis_niloticus
ENSODEG00000019012	-	76	85.432	ENSOANG00000009017	-	100	84.250	Ornithorhynchus_anatinus
ENSODEG00000019012	-	99	61.804	ENSOANG00000011381	-	99	59.309	Ornithorhynchus_anatinus
ENSODEG00000019012	-	100	86.011	ENSOCUG00000006153	PSPC1	100	85.305	Oryctolagus_cuniculus
ENSODEG00000019012	-	88	65.227	ENSORLG00000004232	-	87	63.853	Oryzias_latipes
ENSODEG00000019012	-	88	65.659	ENSORLG00020000578	PSPC1	87	64.069	Oryzias_latipes_hni
ENSODEG00000019012	-	88	65.659	ENSORLG00015017480	pspc1	87	64.719	Oryzias_latipes_hsok
ENSODEG00000019012	-	100	85.633	ENSOGAG00000012643	PSPC1	100	85.305	Otolemur_garnettii
ENSODEG00000019012	-	100	79.924	ENSOARG00000014163	PSPC1	100	79.732	Ovis_aries
ENSODEG00000019012	-	89	83.585	ENSPPAG00000009836	PSPC1	93	91.159	Pan_paniscus
ENSODEG00000019012	-	100	87.097	ENSPPRG00000008833	PSPC1	100	85.249	Panthera_pardus
ENSODEG00000019012	-	100	73.194	ENSPTIG00000016917	PSPC1	100	71.785	Panthera_tigris_altaica
ENSODEG00000019012	-	88	90.693	ENSPTRG00000005677	PSPC1	98	88.601	Pan_troglodytes
ENSODEG00000019012	-	100	84.877	ENSPANG00000001992	PSPC1	99	88.769	Papio_anubis
ENSODEG00000019012	-	99	61.302	ENSPKIG00000003578	pspc1	89	66.322	Paramormyrops_kingsleyae
ENSODEG00000019012	-	99	77.365	ENSPSIG00000005168	PSPC1	99	75.461	Pelodiscus_sinensis
ENSODEG00000019012	-	59	67.097	ENSPMGG00000015135	pspc1	78	70.213	Periophthalmus_magnuspinnatus
ENSODEG00000019012	-	100	85.066	ENSPEMG00000015214	Pspc1	100	83.969	Peromyscus_maniculatus_bairdii
ENSODEG00000019012	-	50	46.538	ENSPMAG00000004618	pspc1	79	46.538	Petromyzon_marinus
ENSODEG00000019012	-	99	84.895	ENSPCIG00000017680	PSPC1	100	83.939	Phascolarctos_cinereus
ENSODEG00000019012	-	93	61.706	ENSPFOG00000003362	pspc1	88	61.229	Poecilia_formosa
ENSODEG00000019012	-	68	60.446	ENSPLAG00000004407	-	52	61.625	Poecilia_latipinna
ENSODEG00000019012	-	99	59.335	ENSPLAG00000011540	pspc1	87	61.229	Poecilia_latipinna
ENSODEG00000019012	-	70	60.000	ENSPMEG00000001025	-	51	61.625	Poecilia_mexicana
ENSODEG00000019012	-	99	58.965	ENSPMEG00000008322	pspc1	87	60.805	Poecilia_mexicana
ENSODEG00000019012	-	99	58.965	ENSPREG00000007786	pspc1	87	60.805	Poecilia_reticulata
ENSODEG00000019012	-	100	85.824	ENSPPYG00000005186	PSPC1	99	86.681	Pongo_abelii
ENSODEG00000019012	-	61	91.411	ENSPCAG00000008314	-	55	91.411	Procavia_capensis
ENSODEG00000019012	-	100	81.853	ENSPCOG00000014364	PSPC1	100	81.298	Propithecus_coquereli
ENSODEG00000019012	-	100	81.749	ENSPVAG00000005036	PSPC1	100	81.190	Pteropus_vampyrus
ENSODEG00000019012	-	99	54.580	ENSPNYG00000008893	pspc1	100	54.064	Pundamilia_nyererei
ENSODEG00000019012	-	88	67.742	ENSPNAG00000016511	pspc1	100	62.056	Pygocentrus_nattereri
ENSODEG00000019012	-	100	84.877	ENSRNOG00000020782	Pspc1	99	87.500	Rattus_norvegicus
ENSODEG00000019012	-	94	87.018	ENSRBIG00000036057	PSPC1	95	89.676	Rhinopithecus_bieti
ENSODEG00000019012	-	100	85.444	ENSRROG00000036334	PSPC1	99	87.500	Rhinopithecus_roxellana
ENSODEG00000019012	-	78	81.343	ENSSBOG00000028172	PSPC1	88	89.179	Saimiri_boliviensis_boliviensis
ENSODEG00000019012	-	100	78.868	ENSSHAG00000004696	PSPC1	100	80.418	Sarcophilus_harrisii
ENSODEG00000019012	-	77	75.871	ENSSFOG00015001395	pspc1	100	66.736	Scleropages_formosus
ENSODEG00000019012	-	95	58.175	ENSSMAG00000001761	pspc1	82	69.697	Scophthalmus_maximus
ENSODEG00000019012	-	88	63.489	ENSSDUG00000010651	pspc1	76	66.589	Seriola_dumerili
ENSODEG00000019012	-	88	60.746	ENSSLDG00000004284	pspc1	86	58.785	Seriola_lalandi_dorsalis
ENSODEG00000019012	-	100	78.897	ENSSARG00000000888	PSPC1	100	79.655	Sorex_araneus
ENSODEG00000019012	-	89	47.992	ENSSPUG00000001136	-	53	56.022	Sphenodon_punctatus
ENSODEG00000019012	-	100	72.000	ENSSPUG00000008550	PSPC1	89	77.391	Sphenodon_punctatus
ENSODEG00000019012	-	91	63.200	ENSSPAG00000001921	pspc1	73	69.479	Stegastes_partitus
ENSODEG00000019012	-	100	85.579	ENSSSCG00000009569	PSPC1	99	88.802	Sus_scrofa
ENSODEG00000019012	-	89	84.277	ENSTGUG00000011295	PSPC1	100	82.809	Taeniopygia_guttata
ENSODEG00000019012	-	95	56.641	ENSTRUG00000011335	pspc1	87	58.635	Takifugu_rubripes
ENSODEG00000019012	-	88	59.957	ENSTNIG00000010358	pspc1	88	57.569	Tetraodon_nigroviridis
ENSODEG00000019012	-	100	70.307	ENSTBEG00000002361	PSPC1	100	65.840	Tupaia_belangeri
ENSODEG00000019012	-	100	86.338	ENSTTRG00000003343	PSPC1	100	84.645	Tursiops_truncatus
ENSODEG00000019012	-	67	91.884	ENSUAMG00000012309	PSPC1	98	92.398	Ursus_americanus
ENSODEG00000019012	-	94	87.500	ENSUMAG00000013993	PSPC1	93	90.691	Ursus_maritimus
ENSODEG00000019012	-	76	86.173	ENSVPAG00000010029	PSPC1	100	85.000	Vicugna_pacos
ENSODEG00000019012	-	100	84.820	ENSVVUG00000006414	PSPC1	100	88.802	Vulpes_vulpes
ENSODEG00000019012	-	73	64.810	ENSXCOG00000017438	pspc1	77	69.325	Xiphophorus_couchianus
ENSODEG00000019012	-	73	65.063	ENSXMAG00000007929	pspc1	77	69.632	Xiphophorus_maculatus