EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000019161 (Gene tree)
Gene ID: 101573789
Gene Symbol: LSM10
Alias: MGC15749
Full Name: LSM10%2C U7 small nuclear RNA associated
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 372 bases
Position: chrJH651645.1:4280556-4280927
Accession: 101573789
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000025836	LSM	PF01423.22	1.3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000026226	LSM10-201	372	XM_004641094	ENSODEP00000025836	123 (aa)	XP_004641151	UPI000333E4C1

Gene Model

Click here to download ENSODEG00000019161's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000019161's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000019161	LSM10	55	30.000	ENSODEG00000017583	LSM2	74	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000019161	LSM10	100	93.496	ENSG00000181817	LSM10	100	93.496	Homo_sapiens
ENSODEG00000019161	LSM10	100	94.309	ENSAMEG00000019854	LSM10	100	94.309	Ailuropoda_melanoleuca
ENSODEG00000019161	LSM10	94	66.379	ENSACIG00000015420	oscp1a	77	66.379	Amphilophus_citrinellus
ENSODEG00000019161	LSM10	96	68.644	ENSAOCG00000015618	LSM10	98	68.644	Amphiprion_ocellaris
ENSODEG00000019161	LSM10	90	65.766	ENSAOCG00000015607	LSM10	86	65.766	Amphiprion_ocellaris
ENSODEG00000019161	LSM10	96	68.644	ENSAOCG00000014654	-	98	68.644	Amphiprion_ocellaris
ENSODEG00000019161	LSM10	96	68.644	ENSAPEG00000021845	-	98	68.644	Amphiprion_percula
ENSODEG00000019161	LSM10	90	65.766	ENSAPEG00000021851	LSM10	86	65.766	Amphiprion_percula
ENSODEG00000019161	LSM10	93	63.158	ENSATEG00000006310	oscp1a	84	63.158	Anabas_testudineus
ENSODEG00000019161	LSM10	100	67.480	ENSACAG00000001231	LSM10	100	67.480	Anolis_carolinensis
ENSODEG00000019161	LSM10	100	92.683	ENSANAG00000018759	-	100	92.683	Aotus_nancymaae
ENSODEG00000019161	LSM10	98	92.500	ENSANAG00000031489	-	98	92.500	Aotus_nancymaae
ENSODEG00000019161	LSM10	96	66.949	ENSACLG00000004728	oscp1a	96	66.949	Astatotilapia_calliptera
ENSODEG00000019161	LSM10	96	68.644	ENSAMXG00000025301	oscp1a	98	68.644	Astyanax_mexicanus
ENSODEG00000019161	LSM10	98	95.000	ENSBTAG00000024096	LSM10	98	95.000	Bos_taurus
ENSODEG00000019161	LSM10	100	91.870	ENSCJAG00000044880	LSM10	100	91.870	Callithrix_jacchus
ENSODEG00000019161	LSM10	100	95.935	ENSCAFG00000003382	LSM10	100	95.935	Canis_familiaris
ENSODEG00000019161	LSM10	100	95.935	ENSCAFG00020008920	LSM10	100	95.935	Canis_lupus_dingo
ENSODEG00000019161	LSM10	98	95.000	ENSCHIG00000009398	LSM10	98	95.000	Capra_hircus
ENSODEG00000019161	LSM10	100	97.561	ENSCAPG00000012567	LSM10	100	97.561	Cavia_aperea
ENSODEG00000019161	LSM10	100	97.561	ENSCPOG00000039302	LSM10	100	97.561	Cavia_porcellus
ENSODEG00000019161	LSM10	100	92.683	ENSCCAG00000018913	-	100	92.683	Cebus_capucinus
ENSODEG00000019161	LSM10	98	92.500	ENSCCAG00000008378	-	98	92.500	Cebus_capucinus
ENSODEG00000019161	LSM10	100	93.496	ENSCATG00000006589	LSM10	100	93.496	Cercocebus_atys
ENSODEG00000019161	LSM10	100	100.000	ENSCLAG00000008633	LSM10	100	100.000	Chinchilla_lanigera
ENSODEG00000019161	LSM10	100	93.496	ENSCSAG00000000134	LSM10	100	93.496	Chlorocebus_sabaeus
ENSODEG00000019161	LSM10	100	92.800	ENSCHOG00000008615	LSM10	100	92.800	Choloepus_hoffmanni
ENSODEG00000019161	LSM10	83	32.353	ENSCSAVG00000001896	-	87	32.353	Ciona_savignyi
ENSODEG00000019161	LSM10	100	93.496	ENSCANG00000019928	LSM10	100	93.496	Colobus_angolensis_palliatus
ENSODEG00000019161	LSM10	93	82.906	ENSCGRG00001022673	-	94	82.906	Cricetulus_griseus_chok1gshd
ENSODEG00000019161	LSM10	98	92.562	ENSCGRG00001004317	-	99	92.562	Cricetulus_griseus_chok1gshd
ENSODEG00000019161	LSM10	93	82.906	ENSCGRG00000015514	-	94	82.906	Cricetulus_griseus_crigri
ENSODEG00000019161	LSM10	98	92.562	ENSCGRG00000014935	-	99	92.562	Cricetulus_griseus_crigri
ENSODEG00000019161	LSM10	96	63.559	ENSCSEG00000010374	oscp1a	79	63.559	Cynoglossus_semilaevis
ENSODEG00000019161	LSM10	97	63.866	ENSCVAG00000001536	oscp1a	90	63.866	Cyprinodon_variegatus
ENSODEG00000019161	LSM10	69	70.588	ENSDARG00000109563	CABZ01074453.1	99	70.588	Danio_rerio
ENSODEG00000019161	LSM10	98	71.074	ENSDARG00000101222	oscp1a	100	71.074	Danio_rerio
ENSODEG00000019161	LSM10	99	93.443	ENSDNOG00000036662	LSM10	99	93.443	Dasypus_novemcinctus
ENSODEG00000019161	LSM10	100	93.496	ENSDORG00000007579	Lsm10	100	93.496	Dipodomys_ordii
ENSODEG00000019161	LSM10	100	91.870	ENSETEG00000005703	LSM10	100	91.870	Echinops_telfairi
ENSODEG00000019161	LSM10	95	52.991	ENSEBUG00000001312	oscp1a	96	52.991	Eptatretus_burgeri
ENSODEG00000019161	LSM10	100	94.309	ENSEASG00005012194	LSM10	100	94.309	Equus_asinus_asinus
ENSODEG00000019161	LSM10	100	95.122	ENSECAG00000005071	LSM10	100	95.122	Equus_caballus
ENSODEG00000019161	LSM10	100	92.683	ENSEEUG00000012032	LSM10	100	92.683	Erinaceus_europaeus
ENSODEG00000019161	LSM10	98	68.595	ENSELUG00000007452	oscp1a	99	68.595	Esox_lucius
ENSODEG00000019161	LSM10	100	69.919	ENSFALG00000000851	LSM10	100	69.919	Ficedula_albicollis
ENSODEG00000019161	LSM10	100	95.935	ENSFDAG00000021056	LSM10	100	95.935	Fukomys_damarensis
ENSODEG00000019161	LSM10	89	67.273	ENSFHEG00000001058	oscp1a	95	67.273	Fundulus_heteroclitus
ENSODEG00000019161	LSM10	97	61.667	ENSGMOG00000019832	oscp1a	98	61.667	Gadus_morhua
ENSODEG00000019161	LSM10	100	73.171	ENSGALG00000002127	LSM10	100	73.171	Gallus_gallus
ENSODEG00000019161	LSM10	91	60.000	ENSGAFG00000016445	oscp1a	93	60.000	Gambusia_affinis
ENSODEG00000019161	LSM10	96	64.407	ENSGACG00000002329	oscp1a	97	64.407	Gasterosteus_aculeatus
ENSODEG00000019161	LSM10	100	73.171	ENSGAGG00000024848	LSM10	100	73.171	Gopherus_agassizii
ENSODEG00000019161	LSM10	100	92.683	ENSGGOG00000003556	LSM10	100	92.683	Gorilla_gorilla
ENSODEG00000019161	LSM10	96	66.949	ENSHBUG00000001722	oscp1a	96	66.949	Haplochromis_burtoni
ENSODEG00000019161	LSM10	100	97.561	ENSHGLG00000011625	LSM10	100	97.561	Heterocephalus_glaber_female
ENSODEG00000019161	LSM10	100	97.561	ENSHGLG00100001769	LSM10	100	97.561	Heterocephalus_glaber_male
ENSODEG00000019161	LSM10	86	67.925	ENSIPUG00000005808	oscp1a	92	67.925	Ictalurus_punctatus
ENSODEG00000019161	LSM10	100	95.935	ENSSTOG00000000606	LSM10	100	95.935	Ictidomys_tridecemlineatus
ENSODEG00000019161	LSM10	96	64.407	ENSKMAG00000012143	oscp1a	98	64.407	Kryptolebias_marmoratus
ENSODEG00000019161	LSM10	98	64.167	ENSLBEG00000017764	oscp1a	98	64.167	Labrus_bergylta
ENSODEG00000019161	LSM10	100	73.171	ENSLACG00000015904	LSM10	95	73.171	Latimeria_chalumnae
ENSODEG00000019161	LSM10	98	70.000	ENSLOCG00000018277	oscp1a	98	70.000	Lepisosteus_oculatus
ENSODEG00000019161	LSM10	100	94.309	ENSLAFG00000009600	LSM10	100	94.309	Loxodonta_africana
ENSODEG00000019161	LSM10	100	93.496	ENSMFAG00000009115	LSM10	100	93.496	Macaca_fascicularis
ENSODEG00000019161	LSM10	100	93.496	ENSMMUG00000017338	LSM10	100	93.496	Macaca_mulatta
ENSODEG00000019161	LSM10	100	93.496	ENSMNEG00000020023	LSM10	100	93.496	Macaca_nemestrina
ENSODEG00000019161	LSM10	100	93.496	ENSMLEG00000025150	LSM10	100	93.496	Mandrillus_leucophaeus
ENSODEG00000019161	LSM10	98	65.833	ENSMAMG00000004427	oscp1a	98	65.833	Mastacembelus_armatus
ENSODEG00000019161	LSM10	96	66.949	ENSMZEG00005026307	oscp1a	96	66.949	Maylandia_zebra
ENSODEG00000019161	LSM10	100	72.358	ENSMGAG00000015707	LSM10	100	72.358	Meleagris_gallopavo
ENSODEG00000019161	LSM10	98	90.083	ENSMAUG00000016624	Lsm10	99	90.083	Mesocricetus_auratus
ENSODEG00000019161	LSM10	98	90.909	ENSMOCG00000021943	Lsm10	99	90.909	Microtus_ochrogaster
ENSODEG00000019161	LSM10	95	64.103	ENSMMOG00000013597	oscp1a	87	64.103	Mola_mola
ENSODEG00000019161	LSM10	100	84.553	ENSMODG00000023328	LSM10	100	84.553	Monodelphis_domestica
ENSODEG00000019161	LSM10	58	57.895	ENSMALG00000012661	oscp1a	60	57.895	Monopterus_albus
ENSODEG00000019161	LSM10	98	90.909	MGP_CAROLIEiJ_G0026467	Lsm10	100	92.473	Mus_caroli
ENSODEG00000019161	LSM10	98	91.736	ENSMUSG00000050188	Lsm10	100	93.548	Mus_musculus
ENSODEG00000019161	LSM10	98	91.736	MGP_PahariEiJ_G0028798	Lsm10	100	93.548	Mus_pahari
ENSODEG00000019161	LSM10	98	91.736	MGP_SPRETEiJ_G0027446	Lsm10	100	93.548	Mus_spretus
ENSODEG00000019161	LSM10	100	95.935	ENSMPUG00000018593	LSM10	100	95.935	Mustela_putorius_furo
ENSODEG00000019161	LSM10	100	91.057	ENSMLUG00000023895	LSM10	100	91.057	Myotis_lucifugus
ENSODEG00000019161	LSM10	100	93.496	ENSNGAG00000015011	Lsm10	100	93.496	Nannospalax_galili
ENSODEG00000019161	LSM10	96	67.797	ENSNBRG00000014306	oscp1a	96	67.797	Neolamprologus_brichardi
ENSODEG00000019161	LSM10	100	94.309	ENSNLEG00000033754	LSM10	100	94.309	Nomascus_leucogenys
ENSODEG00000019161	LSM10	100	85.366	ENSMEUG00000006313	LSM10	100	85.366	Notamacropus_eugenii
ENSODEG00000019161	LSM10	100	91.870	ENSOPRG00000001699	LSM10	100	91.870	Ochotona_princeps
ENSODEG00000019161	LSM10	96	67.797	ENSONIG00000020904	oscp1a	97	67.797	Oreochromis_niloticus
ENSODEG00000019161	LSM10	100	78.049	ENSOANG00000002066	LSM10	100	78.049	Ornithorhynchus_anatinus
ENSODEG00000019161	LSM10	100	91.057	ENSOCUG00000005333	LSM10	100	91.057	Oryctolagus_cuniculus
ENSODEG00000019161	LSM10	97	64.706	ENSORLG00000009504	oscp1a	98	64.706	Oryzias_latipes
ENSODEG00000019161	LSM10	97	64.706	ENSORLG00020016201	oscp1a	98	64.706	Oryzias_latipes_hni
ENSODEG00000019161	LSM10	97	65.546	ENSORLG00015007794	oscp1a	98	65.546	Oryzias_latipes_hsok
ENSODEG00000019161	LSM10	100	94.309	ENSOGAG00000002653	LSM10	100	94.309	Otolemur_garnettii
ENSODEG00000019161	LSM10	98	95.000	ENSOARG00000009596	LSM10	98	95.000	Ovis_aries
ENSODEG00000019161	LSM10	100	93.496	ENSPPAG00000023465	LSM10	100	93.496	Pan_paniscus
ENSODEG00000019161	LSM10	100	95.122	ENSPPRG00000014619	LSM10	100	95.122	Panthera_pardus
ENSODEG00000019161	LSM10	100	95.122	ENSPTIG00000004613	LSM10	100	95.122	Panthera_tigris_altaica
ENSODEG00000019161	LSM10	100	93.496	ENSPTRG00000000539	LSM10	100	93.496	Pan_troglodytes
ENSODEG00000019161	LSM10	100	93.496	ENSPANG00000023172	LSM10	100	93.496	Papio_anubis
ENSODEG00000019161	LSM10	98	65.833	ENSPKIG00000003728	oscp1a	97	65.833	Paramormyrops_kingsleyae
ENSODEG00000019161	LSM10	100	73.171	ENSPSIG00000000590	LSM10	100	73.171	Pelodiscus_sinensis
ENSODEG00000019161	LSM10	62	64.474	ENSPMGG00000015718	oscp1a	99	64.474	Periophthalmus_magnuspinnatus
ENSODEG00000019161	LSM10	84	85.437	ENSPCIG00000014865	LSM10	76	85.437	Phascolarctos_cinereus
ENSODEG00000019161	LSM10	91	66.964	ENSPFOG00000020490	oscp1a	95	66.964	Poecilia_formosa
ENSODEG00000019161	LSM10	91	66.964	ENSPLAG00000016537	oscp1a	85	66.964	Poecilia_latipinna
ENSODEG00000019161	LSM10	88	67.593	ENSPMEG00000000174	oscp1a	94	67.593	Poecilia_mexicana
ENSODEG00000019161	LSM10	91	66.071	ENSPREG00000009899	oscp1a	85	66.071	Poecilia_reticulata
ENSODEG00000019161	LSM10	100	93.496	ENSPPYG00000001539	LSM10	100	93.496	Pongo_abelii
ENSODEG00000019161	LSM10	96	94.915	ENSPCAG00000002520	LSM10	97	94.915	Procavia_capensis
ENSODEG00000019161	LSM10	100	95.935	ENSPVAG00000008644	LSM10	100	95.935	Pteropus_vampyrus
ENSODEG00000019161	LSM10	96	66.949	ENSPNYG00000003138	oscp1a	96	66.949	Pundamilia_nyererei
ENSODEG00000019161	LSM10	95	66.667	ENSPNAG00000028829	oscp1a	97	66.667	Pygocentrus_nattereri
ENSODEG00000019161	LSM10	98	92.562	ENSRNOG00000025716	Lsm10	99	92.562	Rattus_norvegicus
ENSODEG00000019161	LSM10	100	93.496	ENSRBIG00000001561	LSM10	100	93.496	Rhinopithecus_bieti
ENSODEG00000019161	LSM10	100	93.496	ENSRROG00000011414	LSM10	100	93.496	Rhinopithecus_roxellana
ENSODEG00000019161	LSM10	100	92.683	ENSSBOG00000036413	-	100	92.683	Saimiri_boliviensis_boliviensis
ENSODEG00000019161	LSM10	100	84.553	ENSSHAG00000018056	LSM10	100	84.553	Sarcophilus_harrisii
ENSODEG00000019161	LSM10	98	66.116	ENSSFOG00015019954	lsm10	99	66.116	Scleropages_formosus
ENSODEG00000019161	LSM10	93	66.087	ENSSMAG00000001297	oscp1a	98	66.087	Scophthalmus_maximus
ENSODEG00000019161	LSM10	98	63.636	ENSSDUG00000007090	oscp1a	98	63.636	Seriola_dumerili
ENSODEG00000019161	LSM10	94	64.655	ENSSLDG00000000800	oscp1a	96	64.655	Seriola_lalandi_dorsalis
ENSODEG00000019161	LSM10	100	92.800	ENSSARG00000004211	LSM10	100	94.400	Sorex_araneus
ENSODEG00000019161	LSM10	94	66.379	ENSSPAG00000009229	oscp1a	96	66.379	Stegastes_partitus
ENSODEG00000019161	LSM10	100	90.244	ENSSSCG00000038916	LSM10	100	90.244	Sus_scrofa
ENSODEG00000019161	LSM10	99	70.492	ENSTGUG00000001600	-	100	70.492	Taeniopygia_guttata
ENSODEG00000019161	LSM10	99	70.492	ENSTGUG00000001602	-	100	70.492	Taeniopygia_guttata
ENSODEG00000019161	LSM10	97	66.387	ENSTRUG00000010531	oscp1a	96	66.387	Takifugu_rubripes
ENSODEG00000019161	LSM10	100	91.057	ENSTBEG00000016674	LSM10	100	91.057	Tupaia_belangeri
ENSODEG00000019161	LSM10	100	93.496	ENSUAMG00000020265	LSM10	100	93.496	Ursus_americanus
ENSODEG00000019161	LSM10	100	93.496	ENSUMAG00000001438	LSM10	57	93.496	Ursus_maritimus
ENSODEG00000019161	LSM10	100	95.935	ENSVVUG00000023209	LSM10	100	95.935	Vulpes_vulpes
ENSODEG00000019161	LSM10	100	71.545	ENSXETG00000027631	lsm10	100	71.545	Xenopus_tropicalis
ENSODEG00000019161	LSM10	96	62.712	ENSXCOG00000018776	oscp1a	74	62.712	Xiphophorus_couchianus
ENSODEG00000019161	LSM10	88	65.741	ENSXMAG00000019963	oscp1a	86	65.741	Xiphophorus_maculatus