EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSODEG00000019740 (Gene tree)
Gene ID
101567884
Gene Symbol
-
Alias
-
Full Name
U6 snRNA-associated Sm-like protein LSm3 pseudogene
Gene Type
protein_coding
Species
Octodon_degus
Status
putative
Strand
Minus strand
Length
309 bases
Position
chrJH651570.1:13373604-13373912
Accession
101567884
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSODEP00000026328LSMPF01423.221.2e-1811
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSODET00000026805-309-ENSODEP00000026328102 (aa)-UPI0002C595CE
Gene Model
Click here to download ENSODEG00000019740's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000019740's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSODEG00000019740-7434.667ENSODEG00000019072-8234.667
ENSODEG00000019740-7730.488ENSODEG00000020139-6930.488
ENSODEG00000019740-10099.020ENSODEG00000001726LSM310099.020
ENSODEG00000019740-10097.059ENSODEG00000019158-10097.059
ENSODEG00000019740-10093.137ENSODEG00000019403-10093.137
ENSODEG00000019740-7434.667ENSODEG00000008258-8234.667
ENSODEG00000019740-7730.488ENSODEG00000008857-6930.488
ENSODEG00000019740-7730.488ENSODEG00000020094-6930.488
ENSODEG00000019740-6433.333ENSODEG00000019447-5633.333
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSODEG00000019740-10099.020ENSG00000170860LSM310099.020Homo_sapiens
ENSODEG00000019740-10094.118ENSAPOG00000018947lsm310094.118Acanthochromis_polyacanthus
ENSODEG00000019740-10099.020ENSAMEG00000009405LSM310099.020Ailuropoda_melanoleuca
ENSODEG00000019740-10093.137ENSACIG00000004574lsm37193.137Amphilophus_citrinellus
ENSODEG00000019740-10094.118ENSAOCG00000007658lsm310094.118Amphiprion_ocellaris
ENSODEG00000019740-10094.118ENSAPEG00000018621lsm310094.118Amphiprion_percula
ENSODEG00000019740-10094.118ENSATEG00000005153lsm310094.118Anabas_testudineus
ENSODEG00000019740-9398.947ENSAPLG00000014499LSM310098.947Anas_platyrhynchos
ENSODEG00000019740-10098.039ENSACAG00000013503LSM310098.039Anolis_carolinensis
ENSODEG00000019740-10099.020ENSANAG00000034627LSM310099.020Aotus_nancymaae
ENSODEG00000019740-10095.098ENSANAG00000002903-10095.098Aotus_nancymaae
ENSODEG00000019740-9594.845ENSACLG00000001726-9494.845Astatotilapia_calliptera
ENSODEG00000019740-10096.078ENSAMXG00000041214lsm310096.078Astyanax_mexicanus
ENSODEG00000019740-9498.958ENSBTAG00000007363LSM310098.958Bos_taurus
ENSODEG00000019740-10068.627WBGene00003077lsm-310068.627Caenorhabditis_elegans
ENSODEG00000019740-10097.059ENSCAFG00000001760LSM310097.059Canis_familiaris
ENSODEG00000019740-10097.059ENSCAFG00020026452-10097.059Canis_lupus_dingo
ENSODEG00000019740-10097.059ENSCAFG00020017266-10097.059Canis_lupus_dingo
ENSODEG00000019740-10097.059ENSCAFG00020021584-10097.059Canis_lupus_dingo
ENSODEG00000019740-10092.157ENSCAFG00020016680-10092.157Canis_lupus_dingo
ENSODEG00000019740-10088.785ENSCAFG00020020950-10088.785Canis_lupus_dingo
ENSODEG00000019740-10099.020ENSCHIG00000024650LSM310099.020Capra_hircus
ENSODEG00000019740-9980.198ENSTSYG00000028528-9980.198Carlito_syrichta
ENSODEG00000019740-10098.039ENSTSYG00000005204-10098.039Carlito_syrichta
ENSODEG00000019740-9498.958ENSCAPG00000015760LSM310098.958Cavia_aperea
ENSODEG00000019740-10099.020ENSCPOG00000034071LSM310099.020Cavia_porcellus
ENSODEG00000019740-10099.020ENSCCAG00000036499-10099.020Cebus_capucinus
ENSODEG00000019740-10099.020ENSCCAG00000019503-10099.020Cebus_capucinus
ENSODEG00000019740-10080.392ENSCCAG00000032763-10080.392Cebus_capucinus
ENSODEG00000019740-10099.020ENSCATG00000039421LSM310099.020Cercocebus_atys
ENSODEG00000019740-9980.198ENSCATG00000031630-9980.198Cercocebus_atys
ENSODEG00000019740-10099.020ENSCLAG00000015997LSM310099.020Chinchilla_lanigera
ENSODEG00000019740-10094.118ENSCSAG00000019525-10094.118Chlorocebus_sabaeus
ENSODEG00000019740-10098.039ENSCPBG00000014531LSM310098.039Chrysemys_picta_bellii
ENSODEG00000019740-10080.769ENSCSAVG00000009542-10080.769Ciona_savignyi
ENSODEG00000019740-10094.118ENSCANG00000018782-10094.118Colobus_angolensis_palliatus
ENSODEG00000019740-10096.078ENSCANG00000038037-10096.078Colobus_angolensis_palliatus
ENSODEG00000019740-10099.020ENSCANG00000033944-10099.020Colobus_angolensis_palliatus
ENSODEG00000019740-10099.020ENSCGRG00001017598Lsm310099.020Cricetulus_griseus_chok1gshd
ENSODEG00000019740-9883.000ENSCGRG00001011396-10083.000Cricetulus_griseus_chok1gshd
ENSODEG00000019740-10074.757ENSCGRG00001008639-10074.757Cricetulus_griseus_chok1gshd
ENSODEG00000019740-9383.158ENSCGRG00000012129-10083.158Cricetulus_griseus_crigri
ENSODEG00000019740-10099.020ENSCGRG00000016159Lsm310099.020Cricetulus_griseus_crigri
ENSODEG00000019740-10094.118ENSCSEG00000015071lsm37794.118Cynoglossus_semilaevis
ENSODEG00000019740-10093.137ENSCVAG00000006933lsm310093.137Cyprinodon_variegatus
ENSODEG00000019740-10096.078ENSDARG00000089663lsm310096.078Danio_rerio
ENSODEG00000019740-10099.020ENSDNOG00000030808LSM310099.020Dasypus_novemcinctus
ENSODEG00000019740-10079.412ENSDORG00000024490-10079.412Dipodomys_ordii
ENSODEG00000019740-10099.020ENSDORG00000006894-10099.020Dipodomys_ordii
ENSODEG00000019740-10075.728FBgn0051184LSm310075.728Drosophila_melanogaster
ENSODEG00000019740-10099.020ENSETEG00000016207LSM310099.020Echinops_telfairi
ENSODEG00000019740-10088.235ENSEBUG00000004943lsm310088.235Eptatretus_burgeri
ENSODEG00000019740-10099.020ENSEASG00005015443LSM310099.020Equus_asinus_asinus
ENSODEG00000019740-10099.020ENSECAG00000007803LSM310099.020Equus_caballus
ENSODEG00000019740-10095.098ENSELUG00000018922lsm310095.098Esox_lucius
ENSODEG00000019740-10099.020ENSFCAG00000038453LSM310099.020Felis_catus
ENSODEG00000019740-10074.510ENSFCAG00000044344-10074.510Felis_catus
ENSODEG00000019740-10098.039ENSFALG00000012644LSM310098.039Ficedula_albicollis
ENSODEG00000019740-10099.020ENSFDAG00000011470LSM310099.020Fukomys_damarensis
ENSODEG00000019740-10094.118ENSFHEG00000000876lsm310094.118Fundulus_heteroclitus
ENSODEG00000019740-9395.789ENSGMOG00000011024lsm310095.789Gadus_morhua
ENSODEG00000019740-10094.118ENSGAFG00000013965lsm310094.118Gambusia_affinis
ENSODEG00000019740-10094.118ENSGACG00000003488lsm310094.118Gasterosteus_aculeatus
ENSODEG00000019740-10098.039ENSGAGG00000025707LSM310098.039Gopherus_agassizii
ENSODEG00000019740-10099.020ENSGGOG00000010006LSM310099.020Gorilla_gorilla
ENSODEG00000019740-10094.118ENSHBUG00000022399lsm310094.118Haplochromis_burtoni
ENSODEG00000019740-10099.020ENSHGLG00000000651LSM310099.020Heterocephalus_glaber_female
ENSODEG00000019740-10081.373ENSHGLG00000015564-10081.373Heterocephalus_glaber_female
ENSODEG00000019740-10081.373ENSHGLG00100010658-10081.373Heterocephalus_glaber_male
ENSODEG00000019740-10099.020ENSHGLG00100011343LSM310099.020Heterocephalus_glaber_male
ENSODEG00000019740-10093.137ENSHCOG00000013481lsm310093.137Hippocampus_comes
ENSODEG00000019740-10096.078ENSIPUG00000009207lsm310096.078Ictalurus_punctatus
ENSODEG00000019740-10099.020ENSSTOG00000006842LSM310099.020Ictidomys_tridecemlineatus
ENSODEG00000019740-9974.510ENSJJAG00000018311-10074.510Jaculus_jaculus
ENSODEG00000019740-10091.176ENSJJAG00000012797-10091.176Jaculus_jaculus
ENSODEG00000019740-10099.020ENSJJAG00000017351Lsm310099.020Jaculus_jaculus
ENSODEG00000019740-10093.137ENSKMAG00000015182lsm310093.137Kryptolebias_marmoratus
ENSODEG00000019740-9692.857ENSLBEG00000021292lsm310092.857Labrus_bergylta
ENSODEG00000019740-10096.078ENSLOCG00000013560lsm310096.078Lepisosteus_oculatus
ENSODEG00000019740-10098.058ENSLAFG00000023308LSM310098.058Loxodonta_africana
ENSODEG00000019740-10099.020ENSMFAG00000003185LSM310099.020Macaca_fascicularis
ENSODEG00000019740-10076.471ENSMMUG00000043596-10076.471Macaca_mulatta
ENSODEG00000019740-10099.020ENSMMUG00000023126LSM310099.020Macaca_mulatta
ENSODEG00000019740-9577.320ENSMMUG00000002294-9477.320Macaca_mulatta
ENSODEG00000019740-10099.020ENSMNEG00000043632LSM310099.020Macaca_nemestrina
ENSODEG00000019740-9980.198ENSMNEG00000037686-9980.198Macaca_nemestrina
ENSODEG00000019740-10099.020ENSMLEG00000036162LSM310099.020Mandrillus_leucophaeus
ENSODEG00000019740-10094.118ENSMAMG00000012807lsm310094.118Mastacembelus_armatus
ENSODEG00000019740-10094.118ENSMZEG00005016682lsm37394.118Maylandia_zebra
ENSODEG00000019740-9498.958ENSMGAG00000007776LSM310098.958Meleagris_gallopavo
ENSODEG00000019740-10098.039ENSMICG00000032361-10098.039Microcebus_murinus
ENSODEG00000019740-10084.314ENSMICG00000027821-10084.314Microcebus_murinus
ENSODEG00000019740-10099.020ENSMOCG00000014269Lsm310099.020Microtus_ochrogaster
ENSODEG00000019740-10093.137ENSMMOG00000020715lsm310093.137Mola_mola
ENSODEG00000019740-10098.039ENSMODG00000007275LSM310098.039Monodelphis_domestica
ENSODEG00000019740-10094.118ENSMALG00000006485lsm310094.118Monopterus_albus
ENSODEG00000019740-10099.020ENSMUSG00000034192Lsm310099.020Mus_musculus
ENSODEG00000019740-10099.020MGP_PahariEiJ_G0022402Lsm310099.020Mus_pahari
ENSODEG00000019740-10099.020MGP_SPRETEiJ_G0029681Lsm310099.020Mus_spretus
ENSODEG00000019740-9789.899ENSMPUG00000019120-9789.899Mustela_putorius_furo
ENSODEG00000019740-8392.941ENSMPUG00000017256-10092.941Mustela_putorius_furo
ENSODEG00000019740-10099.020ENSMLUG00000010677LSM310099.020Myotis_lucifugus
ENSODEG00000019740-10093.137ENSMLUG00000024700-10093.137Myotis_lucifugus
ENSODEG00000019740-10075.490ENSNGAG00000013716-10075.490Nannospalax_galili
ENSODEG00000019740-10099.020ENSNGAG00000022450Lsm310099.020Nannospalax_galili
ENSODEG00000019740-9981.188ENSNGAG00000010207-9981.188Nannospalax_galili
ENSODEG00000019740-10094.118ENSNBRG00000014318lsm310094.118Neolamprologus_brichardi
ENSODEG00000019740-10099.020ENSNLEG00000005079LSM310099.020Nomascus_leucogenys
ENSODEG00000019740-10090.196ENSNLEG00000030229-10090.196Nomascus_leucogenys
ENSODEG00000019740-10094.118ENSONIG00000000370lsm310094.118Oreochromis_niloticus
ENSODEG00000019740-10094.118ENSONIG00000021369-10094.118Oreochromis_niloticus
ENSODEG00000019740-10098.039ENSOANG00000012273LSM310098.039Ornithorhynchus_anatinus
ENSODEG00000019740-10099.020ENSOCUG00000027653-10099.020Oryctolagus_cuniculus
ENSODEG00000019740-10094.118ENSOCUG00000011088-10094.118Oryctolagus_cuniculus
ENSODEG00000019740-10092.157ENSORLG00000025900lsm310092.157Oryzias_latipes
ENSODEG00000019740-10092.157ENSORLG00020007125lsm310092.157Oryzias_latipes_hni
ENSODEG00000019740-10092.157ENSORLG00015002944lsm310092.157Oryzias_latipes_hsok
ENSODEG00000019740-10092.157ENSOMEG00000001915lsm310092.157Oryzias_melastigma
ENSODEG00000019740-9698.980ENSOGAG00000028858-10098.980Otolemur_garnettii
ENSODEG00000019740-10099.020ENSOGAG00000007659-10099.020Otolemur_garnettii
ENSODEG00000019740-10089.216ENSOGAG00000033051-10089.216Otolemur_garnettii
ENSODEG00000019740-10098.058ENSOARG00000000600LSM310098.058Ovis_aries
ENSODEG00000019740-10099.020ENSPPAG00000034074LSM310099.020Pan_paniscus
ENSODEG00000019740-10099.020ENSPPRG00000012912-10099.020Panthera_pardus
ENSODEG00000019740-9993.069ENSPPRG00000010610-8993.069Panthera_pardus
ENSODEG00000019740-10098.039ENSPPRG00000020953-10098.039Panthera_pardus
ENSODEG00000019740-10099.020ENSPTIG00000003463-10099.020Panthera_tigris_altaica
ENSODEG00000019740-10099.020ENSPTIG00000013072-10099.020Panthera_tigris_altaica
ENSODEG00000019740-10099.020ENSPTRG00000014650LSM310099.020Pan_troglodytes
ENSODEG00000019740-10077.451ENSPANG00000032192-10077.451Papio_anubis
ENSODEG00000019740-10099.020ENSPANG00000009378LSM310099.020Papio_anubis
ENSODEG00000019740-10097.059ENSPKIG00000008037lsm39197.059Paramormyrops_kingsleyae
ENSODEG00000019740-10098.039ENSPSIG00000015720LSM310098.039Pelodiscus_sinensis
ENSODEG00000019740-9393.684ENSPMGG00000012103lsm39693.684Periophthalmus_magnuspinnatus
ENSODEG00000019740-10099.020ENSPEMG00000015797Lsm310099.020Peromyscus_maniculatus_bairdii
ENSODEG00000019740-10082.353ENSPEMG00000020213-10082.353Peromyscus_maniculatus_bairdii
ENSODEG00000019740-10094.118ENSPFOG00000008372lsm310094.118Poecilia_formosa
ENSODEG00000019740-10094.118ENSPLAG00000000563lsm310094.118Poecilia_latipinna
ENSODEG00000019740-10094.118ENSPMEG00000022052lsm310094.118Poecilia_mexicana
ENSODEG00000019740-10094.118ENSPREG00000022485lsm310094.118Poecilia_reticulata
ENSODEG00000019740-10099.020ENSPPYG00000013402LSM310099.020Pongo_abelii
ENSODEG00000019740-10099.020ENSPCAG00000017077LSM310099.020Procavia_capensis
ENSODEG00000019740-10098.039ENSPCOG00000016217-10098.039Propithecus_coquereli
ENSODEG00000019740-9478.125ENSPCOG00000014435-9878.125Propithecus_coquereli
ENSODEG00000019740-10099.020ENSPVAG00000016795LSM310099.020Pteropus_vampyrus
ENSODEG00000019740-10094.118ENSPNYG00000009552lsm37394.118Pundamilia_nyererei
ENSODEG00000019740-10096.078ENSPNAG00000023467lsm310096.078Pygocentrus_nattereri
ENSODEG00000019740-10099.020ENSRNOG00000008733Lsm310099.020Rattus_norvegicus
ENSODEG00000019740-10082.353ENSRBIG00000043783-10082.353Rhinopithecus_bieti
ENSODEG00000019740-10099.020ENSRBIG00000034399LSM310099.020Rhinopithecus_bieti
ENSODEG00000019740-10080.392ENSRROG00000044056-10080.392Rhinopithecus_roxellana
ENSODEG00000019740-10083.333ENSRROG00000039868-10083.333Rhinopithecus_roxellana
ENSODEG00000019740-10099.020ENSRROG00000033276-10099.020Rhinopithecus_roxellana
ENSODEG00000019740-10088.235ENSRROG00000044047-10088.235Rhinopithecus_roxellana
ENSODEG00000019740-10099.020ENSSBOG00000024310LSM310099.020Saimiri_boliviensis_boliviensis
ENSODEG00000019740-10096.078ENSSFOG00015007071lsm310096.078Scleropages_formosus
ENSODEG00000019740-10094.118ENSSMAG00000001818lsm310094.118Scophthalmus_maximus
ENSODEG00000019740-10094.118ENSSDUG00000006040lsm310094.118Seriola_dumerili
ENSODEG00000019740-10094.118ENSSLDG00000006399lsm310094.118Seriola_lalandi_dorsalis
ENSODEG00000019740-5798.276ENSSARG00000005275-10098.276Sorex_araneus
ENSODEG00000019740-9398.947ENSSPUG00000017047-9998.947Sphenodon_punctatus
ENSODEG00000019740-10088.235ENSSPUG00000005394LSM310088.235Sphenodon_punctatus
ENSODEG00000019740-10083.333ENSSPAG00000000934lsm310083.333Stegastes_partitus
ENSODEG00000019740-10099.020ENSSSCG00000011601LSM310099.020Sus_scrofa
ENSODEG00000019740-9577.320ENSSSCG00000023718-9977.320Sus_scrofa
ENSODEG00000019740-10098.039ENSTGUG00000008327LSM310098.039Taeniopygia_guttata
ENSODEG00000019740-10093.137ENSTRUG00000023175lsm310093.137Takifugu_rubripes
ENSODEG00000019740-10093.137ENSTNIG00000005589lsm310093.137Tetraodon_nigroviridis
ENSODEG00000019740-10090.196ENSTBEG00000001050-9990.196Tupaia_belangeri
ENSODEG00000019740-10099.020ENSTTRG00000011197LSM310099.020Tursiops_truncatus
ENSODEG00000019740-10099.020ENSUAMG00000017250-10099.020Ursus_americanus
ENSODEG00000019740-10099.020ENSUMAG00000015905LSM310099.020Ursus_maritimus
ENSODEG00000019740-9398.947ENSVPAG00000010709LSM310098.947Vicugna_pacos
ENSODEG00000019740-10094.118ENSVVUG00000005684-10094.118Vulpes_vulpes
ENSODEG00000019740-10094.118ENSVVUG00000006481-10094.118Vulpes_vulpes
ENSODEG00000019740-10090.196ENSVVUG00000024228-10090.196Vulpes_vulpes
ENSODEG00000019740-10095.098ENSVVUG00000007332-9195.098Vulpes_vulpes
ENSODEG00000019740-10095.098ENSVVUG00000029294-10095.098Vulpes_vulpes
ENSODEG00000019740-10097.059ENSXETG00000011534lsm310097.059Xenopus_tropicalis
ENSODEG00000019740-10094.118ENSXCOG00000017432LSM310094.118Xiphophorus_couchianus
ENSODEG00000019740-10094.118ENSXMAG00000009151lsm310094.118Xiphophorus_maculatus

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