EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000020420 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 243 bases
Position: chrJH651525.1:17729013-17729255
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000026924	LSM	PF01423.22	6.3e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000027485	-	243	-	ENSODEP00000026924	80 (aa)	-	-

Gene Model

Click here to download ENSODEG00000020420's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000020420's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000020420	-	83	51.515	ENSODEG00000010328	-	78	51.515
ENSODEG00000020420	-	100	96.250	ENSODEG00000002307	-	100	96.250
ENSODEG00000020420	-	100	93.750	ENSODEG00000019419	-	100	93.750
ENSODEG00000020420	-	96	85.714	ENSODEG00000018684	-	100	85.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000020420	-	100	97.500	ENSG00000164167	LSM6	100	97.500	Homo_sapiens
ENSODEG00000020420	-	100	92.500	ENSAPOG00000019832	lsm6	100	92.500	Acanthochromis_polyacanthus
ENSODEG00000020420	-	100	97.500	ENSAMEG00000016671	LSM6	100	97.500	Ailuropoda_melanoleuca
ENSODEG00000020420	-	100	92.500	ENSACIG00000016711	lsm6	100	92.500	Amphilophus_citrinellus
ENSODEG00000020420	-	100	92.500	ENSAOCG00000002110	lsm6	52	92.500	Amphiprion_ocellaris
ENSODEG00000020420	-	100	92.500	ENSAPEG00000023992	lsm6	100	92.500	Amphiprion_percula
ENSODEG00000020420	-	100	92.500	ENSATEG00000012610	lsm6	100	92.500	Anabas_testudineus
ENSODEG00000020420	-	96	97.403	ENSAPLG00000012594	LSM6	99	97.403	Anas_platyrhynchos
ENSODEG00000020420	-	100	97.500	ENSACAG00000004004	LSM6	100	97.500	Anolis_carolinensis
ENSODEG00000020420	-	100	97.500	ENSANAG00000030568	-	100	97.500	Aotus_nancymaae
ENSODEG00000020420	-	100	83.750	ENSANAG00000021839	-	100	83.750	Aotus_nancymaae
ENSODEG00000020420	-	100	92.500	ENSACLG00000025621	lsm6	100	92.500	Astatotilapia_calliptera
ENSODEG00000020420	-	100	93.750	ENSAMXG00000038738	lsm6	100	93.750	Astyanax_mexicanus
ENSODEG00000020420	-	100	91.250	ENSBTAG00000052085	-	100	91.250	Bos_taurus
ENSODEG00000020420	-	100	97.500	ENSBTAG00000014060	LSM6	100	97.500	Bos_taurus
ENSODEG00000020420	-	94	81.333	WBGene00003080	lsm-6	97	81.333	Caenorhabditis_elegans
ENSODEG00000020420	-	100	97.500	ENSCJAG00000002482	LSM6	100	97.500	Callithrix_jacchus
ENSODEG00000020420	-	100	97.500	ENSCAFG00000007738	LSM6	100	97.500	Canis_familiaris
ENSODEG00000020420	-	100	97.500	ENSCAFG00020025902	LSM6	100	97.500	Canis_lupus_dingo
ENSODEG00000020420	-	100	81.250	ENSCHIG00000024198	-	95	81.250	Capra_hircus
ENSODEG00000020420	-	100	97.500	ENSCHIG00000010334	-	100	97.500	Capra_hircus
ENSODEG00000020420	-	89	97.183	ENSCHIG00000012864	-	100	97.183	Capra_hircus
ENSODEG00000020420	-	94	84.000	ENSTSYG00000012759	-	89	84.000	Carlito_syrichta
ENSODEG00000020420	-	100	97.500	ENSTSYG00000026972	LSM6	100	97.500	Carlito_syrichta
ENSODEG00000020420	-	81	95.385	ENSCAPG00000011179	-	100	95.385	Cavia_aperea
ENSODEG00000020420	-	100	97.500	ENSCAPG00000008104	LSM6	100	97.500	Cavia_aperea
ENSODEG00000020420	-	100	97.500	ENSCPOG00000032655	LSM6	100	97.500	Cavia_porcellus
ENSODEG00000020420	-	99	96.203	ENSCCAG00000020665	-	99	96.203	Cebus_capucinus
ENSODEG00000020420	-	100	97.500	ENSCCAG00000036437	LSM6	100	97.500	Cebus_capucinus
ENSODEG00000020420	-	100	97.500	ENSCATG00000002770	-	100	97.500	Cercocebus_atys
ENSODEG00000020420	-	100	71.250	ENSCATG00000038799	-	100	71.250	Cercocebus_atys
ENSODEG00000020420	-	100	97.500	ENSCLAG00000005495	LSM6	100	97.500	Chinchilla_lanigera
ENSODEG00000020420	-	89	77.465	ENSCLAG00000005685	-	100	77.465	Chinchilla_lanigera
ENSODEG00000020420	-	100	97.500	ENSCSAG00000003421	LSM6	100	97.500	Chlorocebus_sabaeus
ENSODEG00000020420	-	100	77.500	ENSCHOG00000003420	LSM6	100	77.500	Choloepus_hoffmanni
ENSODEG00000020420	-	100	97.500	ENSCPBG00000027472	LSM6	84	97.500	Chrysemys_picta_bellii
ENSODEG00000020420	-	95	93.421	ENSCING00000019152	-	93	93.421	Ciona_intestinalis
ENSODEG00000020420	-	95	94.737	ENSCSAVG00000002065	-	93	94.737	Ciona_savignyi
ENSODEG00000020420	-	100	97.500	ENSCANG00000006849	-	100	97.500	Colobus_angolensis_palliatus
ENSODEG00000020420	-	100	97.500	ENSCANG00000041263	-	100	97.500	Colobus_angolensis_palliatus
ENSODEG00000020420	-	100	70.000	ENSCANG00000035214	-	100	70.000	Colobus_angolensis_palliatus
ENSODEG00000020420	-	100	97.500	ENSCGRG00001017142	Lsm6	100	97.500	Cricetulus_griseus_chok1gshd
ENSODEG00000020420	-	100	97.500	ENSCGRG00000008320	Lsm6	100	97.500	Cricetulus_griseus_crigri
ENSODEG00000020420	-	100	92.500	ENSCSEG00000000423	lsm6	100	92.500	Cynoglossus_semilaevis
ENSODEG00000020420	-	100	92.500	ENSCVAG00000001592	lsm6	100	92.500	Cyprinodon_variegatus
ENSODEG00000020420	-	100	93.750	ENSDARG00000036995	lsm6	100	93.750	Danio_rerio
ENSODEG00000020420	-	100	97.500	ENSDNOG00000044848	-	100	97.500	Dasypus_novemcinctus
ENSODEG00000020420	-	86	97.101	ENSDNOG00000040186	-	74	97.101	Dasypus_novemcinctus
ENSODEG00000020420	-	100	97.500	ENSDORG00000000933	Lsm6	100	97.500	Dipodomys_ordii
ENSODEG00000020420	-	96	83.117	FBgn0034564	CG9344	97	83.117	Drosophila_melanogaster
ENSODEG00000020420	-	60	95.833	ENSETEG00000013098	LSM6	100	95.833	Echinops_telfairi
ENSODEG00000020420	-	100	96.250	ENSEBUG00000017073	lsm6	100	96.250	Eptatretus_burgeri
ENSODEG00000020420	-	86	97.101	ENSEASG00005001533	LSM6	72	97.101	Equus_asinus_asinus
ENSODEG00000020420	-	100	97.500	ENSECAG00000021036	LSM6	100	97.500	Equus_caballus
ENSODEG00000020420	-	99	69.620	ENSEEUG00000002101	LSM6	100	69.620	Erinaceus_europaeus
ENSODEG00000020420	-	100	93.750	ENSELUG00000014301	LSM6	100	93.750	Esox_lucius
ENSODEG00000020420	-	100	97.500	ENSFCAG00000003047	LSM6	100	97.500	Felis_catus
ENSODEG00000020420	-	100	97.500	ENSFALG00000005509	LSM6	92	97.500	Ficedula_albicollis
ENSODEG00000020420	-	100	85.000	ENSFDAG00000019073	-	100	85.000	Fukomys_damarensis
ENSODEG00000020420	-	100	97.500	ENSFDAG00000020913	-	100	97.500	Fukomys_damarensis
ENSODEG00000020420	-	100	92.500	ENSFHEG00000007948	lsm6	100	92.500	Fundulus_heteroclitus
ENSODEG00000020420	-	100	92.500	ENSGMOG00000015550	lsm6	100	92.500	Gadus_morhua
ENSODEG00000020420	-	100	97.500	ENSGALG00000009985	LSM6	100	97.500	Gallus_gallus
ENSODEG00000020420	-	100	92.500	ENSGAFG00000017763	lsm6	100	92.500	Gambusia_affinis
ENSODEG00000020420	-	99	93.671	ENSGACG00000017223	lsm6	99	93.671	Gasterosteus_aculeatus
ENSODEG00000020420	-	100	97.500	ENSGAGG00000020980	LSM6	100	97.500	Gopherus_agassizii
ENSODEG00000020420	-	100	97.500	ENSGGOG00000001310	LSM6	100	97.500	Gorilla_gorilla
ENSODEG00000020420	-	100	92.500	ENSHBUG00000008618	lsm6	100	92.500	Haplochromis_burtoni
ENSODEG00000020420	-	100	97.500	ENSHGLG00000000205	LSM6	100	97.500	Heterocephalus_glaber_female
ENSODEG00000020420	-	100	97.500	ENSHGLG00100014341	LSM6	100	97.500	Heterocephalus_glaber_male
ENSODEG00000020420	-	100	92.500	ENSHCOG00000005591	lsm6	100	92.500	Hippocampus_comes
ENSODEG00000020420	-	100	92.500	ENSIPUG00000004508	lsm6	100	92.500	Ictalurus_punctatus
ENSODEG00000020420	-	100	97.500	ENSSTOG00000002678	LSM6	100	97.500	Ictidomys_tridecemlineatus
ENSODEG00000020420	-	96	77.922	ENSJJAG00000016942	-	97	77.922	Jaculus_jaculus
ENSODEG00000020420	-	100	97.500	ENSJJAG00000013845	-	100	97.500	Jaculus_jaculus
ENSODEG00000020420	-	100	87.500	ENSJJAG00000011211	-	100	87.500	Jaculus_jaculus
ENSODEG00000020420	-	100	92.500	ENSKMAG00000004105	lsm6	100	92.500	Kryptolebias_marmoratus
ENSODEG00000020420	-	100	92.500	ENSLBEG00000018441	lsm6	100	92.500	Labrus_bergylta
ENSODEG00000020420	-	100	97.500	ENSLACG00000006937	LSM6	100	97.500	Latimeria_chalumnae
ENSODEG00000020420	-	100	92.500	ENSLOCG00000017683	-	100	92.500	Lepisosteus_oculatus
ENSODEG00000020420	-	100	93.750	ENSLOCG00000008852	lsm6	100	93.750	Lepisosteus_oculatus
ENSODEG00000020420	-	100	97.500	ENSLAFG00000001952	LSM6	100	97.500	Loxodonta_africana
ENSODEG00000020420	-	100	97.500	ENSMFAG00000033073	LSM6	100	97.500	Macaca_fascicularis
ENSODEG00000020420	-	100	72.500	ENSMNEG00000040412	-	100	72.500	Macaca_nemestrina
ENSODEG00000020420	-	100	97.500	ENSMNEG00000034820	-	100	97.500	Macaca_nemestrina
ENSODEG00000020420	-	100	97.500	ENSMLEG00000035153	LSM6	100	97.500	Mandrillus_leucophaeus
ENSODEG00000020420	-	100	92.500	ENSMAMG00000014029	lsm6	100	92.500	Mastacembelus_armatus
ENSODEG00000020420	-	100	92.500	ENSMZEG00005009146	lsm6	100	92.500	Maylandia_zebra
ENSODEG00000020420	-	100	97.500	ENSMGAG00000003802	LSM6	100	97.500	Meleagris_gallopavo
ENSODEG00000020420	-	100	97.500	ENSMAUG00000014938	Lsm6	100	97.500	Mesocricetus_auratus
ENSODEG00000020420	-	100	97.500	ENSMICG00000042599	LSM6	100	97.500	Microcebus_murinus
ENSODEG00000020420	-	98	88.462	ENSMICG00000047411	-	92	88.462	Microcebus_murinus
ENSODEG00000020420	-	100	97.500	ENSMOCG00000020049	Lsm6	100	97.500	Microtus_ochrogaster
ENSODEG00000020420	-	100	86.250	ENSMMOG00000007379	-	100	86.250	Mola_mola
ENSODEG00000020420	-	100	92.500	ENSMMOG00000005470	lsm6	100	92.500	Mola_mola
ENSODEG00000020420	-	100	97.500	ENSMODG00000000526	LSM6	100	97.500	Monodelphis_domestica
ENSODEG00000020420	-	100	92.500	ENSMALG00000002419	lsm6	100	92.500	Monopterus_albus
ENSODEG00000020420	-	100	97.500	MGP_CAROLIEiJ_G0031245	Lsm6	100	97.500	Mus_caroli
ENSODEG00000020420	-	100	97.500	ENSMUSG00000031683	Lsm6	100	97.500	Mus_musculus
ENSODEG00000020420	-	100	97.500	MGP_PahariEiJ_G0022851	Lsm6	100	97.500	Mus_pahari
ENSODEG00000020420	-	100	97.500	MGP_SPRETEiJ_G0032365	Lsm6	100	97.500	Mus_spretus
ENSODEG00000020420	-	99	97.468	ENSMPUG00000006936	LSM6	92	97.468	Mustela_putorius_furo
ENSODEG00000020420	-	100	97.500	ENSMLUG00000026355	LSM6	100	97.500	Myotis_lucifugus
ENSODEG00000020420	-	100	97.500	ENSNGAG00000019116	Lsm6	100	97.500	Nannospalax_galili
ENSODEG00000020420	-	100	92.500	ENSNBRG00000004887	lsm6	100	92.500	Neolamprologus_brichardi
ENSODEG00000020420	-	100	97.500	ENSNLEG00000005584	LSM6	100	97.500	Nomascus_leucogenys
ENSODEG00000020420	-	100	96.250	ENSOPRG00000011199	LSM6	100	96.250	Ochotona_princeps
ENSODEG00000020420	-	100	92.500	ENSONIG00000010005	lsm6	100	92.500	Oreochromis_niloticus
ENSODEG00000020420	-	98	71.795	ENSOANG00000006895	-	100	71.795	Ornithorhynchus_anatinus
ENSODEG00000020420	-	98	71.795	ENSOANG00000006894	-	100	71.795	Ornithorhynchus_anatinus
ENSODEG00000020420	-	100	91.250	ENSORLG00000024158	lsm6	100	91.250	Oryzias_latipes
ENSODEG00000020420	-	100	91.250	ENSORLG00020017383	lsm6	100	91.250	Oryzias_latipes_hni
ENSODEG00000020420	-	100	91.250	ENSORLG00015016903	lsm6	100	91.250	Oryzias_latipes_hsok
ENSODEG00000020420	-	100	92.500	ENSOMEG00000000074	lsm6	100	92.500	Oryzias_melastigma
ENSODEG00000020420	-	100	97.500	ENSOGAG00000026665	-	100	97.500	Otolemur_garnettii
ENSODEG00000020420	-	100	97.500	ENSOGAG00000033153	-	100	97.500	Otolemur_garnettii
ENSODEG00000020420	-	99	91.139	ENSOARG00000011641	-	92	91.139	Ovis_aries
ENSODEG00000020420	-	86	97.101	ENSOARG00000008509	-	88	97.101	Ovis_aries
ENSODEG00000020420	-	100	97.500	ENSPPAG00000037929	LSM6	100	97.500	Pan_paniscus
ENSODEG00000020420	-	100	97.500	ENSPPRG00000012806	LSM6	100	97.500	Panthera_pardus
ENSODEG00000020420	-	100	97.500	ENSPTIG00000019769	LSM6	100	97.500	Panthera_tigris_altaica
ENSODEG00000020420	-	100	97.500	ENSPTRG00000016488	LSM6	100	97.500	Pan_troglodytes
ENSODEG00000020420	-	100	97.500	ENSPANG00000006552	LSM6	100	97.500	Papio_anubis
ENSODEG00000020420	-	100	93.750	ENSPKIG00000016176	lsm6	100	93.750	Paramormyrops_kingsleyae
ENSODEG00000020420	-	100	97.500	ENSPSIG00000016942	LSM6	100	97.500	Pelodiscus_sinensis
ENSODEG00000020420	-	100	92.500	ENSPMGG00000018004	lsm6	100	92.500	Periophthalmus_magnuspinnatus
ENSODEG00000020420	-	100	97.500	ENSPEMG00000012410	Lsm6	100	97.500	Peromyscus_maniculatus_bairdii
ENSODEG00000020420	-	100	96.250	ENSPMAG00000006949	lsm6	100	96.250	Petromyzon_marinus
ENSODEG00000020420	-	100	97.500	ENSPCIG00000023469	LSM6	80	97.101	Phascolarctos_cinereus
ENSODEG00000020420	-	100	92.500	ENSPFOG00000008881	lsm6	100	92.500	Poecilia_formosa
ENSODEG00000020420	-	100	92.500	ENSPLAG00000003202	lsm6	100	92.500	Poecilia_latipinna
ENSODEG00000020420	-	100	92.500	ENSPMEG00000004000	lsm6	100	92.500	Poecilia_mexicana
ENSODEG00000020420	-	100	92.500	ENSPREG00000023235	lsm6	100	92.500	Poecilia_reticulata
ENSODEG00000020420	-	100	97.500	ENSPPYG00000015105	LSM6	100	97.500	Pongo_abelii
ENSODEG00000020420	-	100	97.500	ENSPCOG00000013899	LSM6	100	97.500	Propithecus_coquereli
ENSODEG00000020420	-	100	92.500	ENSPNYG00000012614	lsm6	100	92.500	Pundamilia_nyererei
ENSODEG00000020420	-	100	93.750	ENSPNAG00000018779	lsm6	100	93.750	Pygocentrus_nattereri
ENSODEG00000020420	-	100	97.500	ENSRNOG00000049370	LOC100360750	100	97.500	Rattus_norvegicus
ENSODEG00000020420	-	100	97.500	ENSRNOG00000030374	Lsm6	100	97.500	Rattus_norvegicus
ENSODEG00000020420	-	100	97.500	ENSRBIG00000027878	LSM6	100	97.500	Rhinopithecus_bieti
ENSODEG00000020420	-	100	97.500	ENSRROG00000024868	LSM6	100	97.500	Rhinopithecus_roxellana
ENSODEG00000020420	-	95	40.000	YDR378C	-	93	43.750	Saccharomyces_cerevisiae
ENSODEG00000020420	-	100	73.750	ENSSBOG00000028103	-	100	73.750	Saimiri_boliviensis_boliviensis
ENSODEG00000020420	-	100	97.500	ENSSBOG00000021229	-	100	97.500	Saimiri_boliviensis_boliviensis
ENSODEG00000020420	-	100	93.750	ENSSFOG00015016480	lsm6	100	93.750	Scleropages_formosus
ENSODEG00000020420	-	100	92.500	ENSSMAG00000004550	lsm6	100	92.500	Scophthalmus_maximus
ENSODEG00000020420	-	100	92.500	ENSSDUG00000020459	lsm6	50	92.500	Seriola_dumerili
ENSODEG00000020420	-	100	92.500	ENSSLDG00000020533	lsm6	83	92.500	Seriola_lalandi_dorsalis
ENSODEG00000020420	-	86	94.203	ENSSLDG00000004136	-	59	94.203	Seriola_lalandi_dorsalis
ENSODEG00000020420	-	60	95.833	ENSSARG00000000689	LSM6	100	95.833	Sorex_araneus
ENSODEG00000020420	-	100	97.500	ENSSPUG00000008657	LSM6	100	97.500	Sphenodon_punctatus
ENSODEG00000020420	-	100	92.500	ENSSPAG00000003246	lsm6	100	92.500	Stegastes_partitus
ENSODEG00000020420	-	100	97.500	ENSSSCG00000035973	LSM6	100	97.500	Sus_scrofa
ENSODEG00000020420	-	100	97.500	ENSTGUG00000002663	LSM6	100	97.500	Taeniopygia_guttata
ENSODEG00000020420	-	100	92.500	ENSTRUG00000023398	lsm6	100	92.500	Takifugu_rubripes
ENSODEG00000020420	-	100	92.500	ENSTNIG00000017725	lsm6	100	92.500	Tetraodon_nigroviridis
ENSODEG00000020420	-	100	97.500	ENSTTRG00000004609	LSM6	100	97.500	Tursiops_truncatus
ENSODEG00000020420	-	98	88.462	ENSUAMG00000014213	LSM6	64	88.462	Ursus_americanus
ENSODEG00000020420	-	98	88.462	ENSUMAG00000015727	LSM6	64	88.462	Ursus_maritimus
ENSODEG00000020420	-	100	97.500	ENSVPAG00000006922	LSM6	100	97.500	Vicugna_pacos
ENSODEG00000020420	-	100	97.500	ENSVVUG00000009254	LSM6	68	97.500	Vulpes_vulpes
ENSODEG00000020420	-	100	97.500	ENSXETG00000023683	lsm6	100	97.500	Xenopus_tropicalis
ENSODEG00000020420	-	100	92.500	ENSXMAG00000009606	lsm6	100	92.500	Xiphophorus_maculatus