EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000020549 (Gene tree)
Gene ID: 101563011
Gene Symbol: -
Alias: -
Full Name: U6 snRNA-associated Sm-like protein LSm4
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 420 bases
Position: chrJH651571.1:12032578-12032997
Accession: 101563011
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000027033	LSM	PF01423.22	7.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000027614	-	420	XM_012515292	ENSODEP00000027033	139 (aa)	XP_012370746	UPI00062AA592

Gene Model

Click here to download ENSODEG00000020549's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000020549's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000020549	-	52	34.722	ENSODEG00000020162	-	57	34.722
ENSODEG00000020549	-	52	34.722	ENSODEG00000008064	-	56	34.722
ENSODEG00000020549	-	70	32.000	ENSODEG00000017583	LSM2	82	35.000
ENSODEG00000020549	-	100	89.928	ENSODEG00000004519	-	100	82.734
ENSODEG00000020549	-	100	76.259	ENSODEG00000011712	-	100	76.259
ENSODEG00000020549	-	52	34.722	ENSODEG00000019354	-	56	34.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000020549	-	100	97.122	ENSG00000130520	LSM4	100	97.122	Homo_sapiens
ENSODEG00000020549	-	71	96.970	ENSAPOG00000005643	lsm4	58	98.864	Acanthochromis_polyacanthus
ENSODEG00000020549	-	99	97.101	ENSAMEG00000011162	LSM4	95	97.101	Ailuropoda_melanoleuca
ENSODEG00000020549	-	99	77.622	ENSAOCG00000006414	lsm4	59	98.864	Amphiprion_ocellaris
ENSODEG00000020549	-	99	75.000	ENSAPEG00000006238	lsm4	59	98.864	Amphiprion_percula
ENSODEG00000020549	-	71	96.970	ENSATEG00000016559	lsm4	58	98.864	Anabas_testudineus
ENSODEG00000020549	-	100	97.122	ENSANAG00000034659	LSM4	100	97.122	Aotus_nancymaae
ENSODEG00000020549	-	79	83.065	ENSACLG00000022738	lsm4	60	98.864	Astatotilapia_calliptera
ENSODEG00000020549	-	99	79.710	ENSAMXG00000016932	lsm4	96	83.212	Astyanax_mexicanus
ENSODEG00000020549	-	100	97.122	ENSBTAG00000008578	LSM4	100	97.122	Bos_taurus
ENSODEG00000020549	-	60	75.904	WBGene00003078	lsm-4	67	75.904	Caenorhabditis_elegans
ENSODEG00000020549	-	100	97.122	ENSCJAG00000014171	LSM4	100	97.122	Callithrix_jacchus
ENSODEG00000020549	-	99	97.101	ENSCAFG00000014900	LSM4	90	97.101	Canis_familiaris
ENSODEG00000020549	-	100	97.122	ENSCAFG00020012137	LSM4	100	97.122	Canis_lupus_dingo
ENSODEG00000020549	-	99	97.101	ENSCHIG00000010928	LSM4	91	97.101	Capra_hircus
ENSODEG00000020549	-	100	96.403	ENSTSYG00000030906	LSM4	100	96.403	Carlito_syrichta
ENSODEG00000020549	-	100	96.403	ENSCAPG00000014140	LSM4	100	96.403	Cavia_aperea
ENSODEG00000020549	-	100	96.403	ENSCPOG00000024117	LSM4	100	96.403	Cavia_porcellus
ENSODEG00000020549	-	100	97.122	ENSCCAG00000036308	LSM4	100	97.122	Cebus_capucinus
ENSODEG00000020549	-	100	97.122	ENSCATG00000029311	LSM4	100	97.122	Cercocebus_atys
ENSODEG00000020549	-	100	99.281	ENSCLAG00000010828	LSM4	100	99.281	Chinchilla_lanigera
ENSODEG00000020549	-	100	97.122	ENSCSAG00000005370	LSM4	100	97.122	Chlorocebus_sabaeus
ENSODEG00000020549	-	100	80.576	ENSCPBG00000012925	LSM4	100	88.489	Chrysemys_picta_bellii
ENSODEG00000020549	-	62	91.860	ENSCING00000007519	-	69	92.045	Ciona_intestinalis
ENSODEG00000020549	-	62	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSODEG00000020549	-	100	97.122	ENSCANG00000043686	LSM4	100	97.122	Colobus_angolensis_palliatus
ENSODEG00000020549	-	100	92.806	ENSCGRG00001014436	Lsm4	100	92.806	Cricetulus_griseus_chok1gshd
ENSODEG00000020549	-	99	92.754	ENSCGRG00000009398	Lsm4	100	92.754	Cricetulus_griseus_crigri
ENSODEG00000020549	-	70	95.876	ENSCSEG00000016127	lsm4	96	77.372	Cynoglossus_semilaevis
ENSODEG00000020549	-	99	77.536	ENSCVAG00000010601	lsm4	62	97.727	Cyprinodon_variegatus
ENSODEG00000020549	-	88	74.797	ENSCVAG00000021828	lsm4	94	74.797	Cyprinodon_variegatus
ENSODEG00000020549	-	97	78.014	ENSDARG00000023852	lsm4	62	98.864	Danio_rerio
ENSODEG00000020549	-	100	97.842	ENSDORG00000024225	Lsm4	100	97.842	Dipodomys_ordii
ENSODEG00000020549	-	70	81.443	FBgn0032240	CG17768	57	88.636	Drosophila_melanogaster
ENSODEG00000020549	-	89	95.161	ENSETEG00000007762	-	100	95.161	Echinops_telfairi
ENSODEG00000020549	-	54	93.333	ENSEBUG00000003639	-	53	88.750	Eptatretus_burgeri
ENSODEG00000020549	-	100	97.122	ENSECAG00000010141	LSM4	57	97.122	Equus_caballus
ENSODEG00000020549	-	95	82.090	ENSELUG00000012821	lsm4	100	81.818	Esox_lucius
ENSODEG00000020549	-	100	97.122	ENSFCAG00000040580	LSM4	100	97.122	Felis_catus
ENSODEG00000020549	-	99	79.710	ENSFALG00000009478	LSM4	99	88.406	Ficedula_albicollis
ENSODEG00000020549	-	99	98.551	ENSFDAG00000010124	LSM4	100	98.551	Fukomys_damarensis
ENSODEG00000020549	-	69	96.875	ENSGMOG00000007729	lsm4	95	78.723	Gadus_morhua
ENSODEG00000020549	-	100	79.856	ENSGALG00000003385	LSM4	100	88.489	Gallus_gallus
ENSODEG00000020549	-	79	82.258	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSODEG00000020549	-	68	97.895	ENSGACG00000008140	lsm4	59	98.864	Gasterosteus_aculeatus
ENSODEG00000020549	-	100	80.576	ENSGAGG00000017812	LSM4	100	88.489	Gopherus_agassizii
ENSODEG00000020549	-	100	97.122	ENSGGOG00000012914	-	100	97.122	Gorilla_gorilla
ENSODEG00000020549	-	100	97.122	ENSHGLG00000006568	LSM4	100	97.122	Heterocephalus_glaber_female
ENSODEG00000020549	-	67	100.000	ENSHGLG00100007894	LSM4	100	100.000	Heterocephalus_glaber_male
ENSODEG00000020549	-	99	77.372	ENSHCOG00000008819	lsm4	62	98.864	Hippocampus_comes
ENSODEG00000020549	-	99	79.710	ENSIPUG00000005368	Lsm4	96	83.212	Ictalurus_punctatus
ENSODEG00000020549	-	100	97.122	ENSSTOG00000016494	LSM4	100	97.122	Ictidomys_tridecemlineatus
ENSODEG00000020549	-	100	94.245	ENSJJAG00000017420	Lsm4	100	94.245	Jaculus_jaculus
ENSODEG00000020549	-	62	97.674	ENSKMAG00000005073	lsm4	61	97.727	Kryptolebias_marmoratus
ENSODEG00000020549	-	71	96.970	ENSLBEG00000027930	lsm4	59	98.864	Labrus_bergylta
ENSODEG00000020549	-	99	81.752	ENSLACG00000015861	LSM4	98	81.752	Latimeria_chalumnae
ENSODEG00000020549	-	93	82.171	ENSLOCG00000002025	lsm4	62	97.727	Lepisosteus_oculatus
ENSODEG00000020549	-	99	95.652	ENSLAFG00000017459	LSM4	99	95.652	Loxodonta_africana
ENSODEG00000020549	-	100	97.122	ENSMFAG00000031194	LSM4	100	97.122	Macaca_fascicularis
ENSODEG00000020549	-	100	97.122	ENSMMUG00000004405	LSM4	100	97.122	Macaca_mulatta
ENSODEG00000020549	-	100	97.122	ENSMNEG00000042899	LSM4	100	97.122	Macaca_nemestrina
ENSODEG00000020549	-	100	97.122	ENSMLEG00000027948	LSM4	100	97.122	Mandrillus_leucophaeus
ENSODEG00000020549	-	99	79.710	ENSMAMG00000006190	lsm4	96	77.372	Mastacembelus_armatus
ENSODEG00000020549	-	99	81.818	ENSMZEG00005016420	lsm4	60	98.864	Maylandia_zebra
ENSODEG00000020549	-	99	82.014	ENSMGAG00000004976	LSM4	99	87.681	Meleagris_gallopavo
ENSODEG00000020549	-	100	96.403	ENSMICG00000000222	LSM4	100	96.403	Microcebus_murinus
ENSODEG00000020549	-	100	93.525	ENSMOCG00000020861	Lsm4	100	93.525	Microtus_ochrogaster
ENSODEG00000020549	-	89	93.548	ENSMODG00000015044	-	100	93.548	Monodelphis_domestica
ENSODEG00000020549	-	99	76.429	ENSMALG00000018159	lsm4	62	97.727	Monopterus_albus
ENSODEG00000020549	-	100	93.525	MGP_CAROLIEiJ_G0031158	Lsm4	100	93.525	Mus_caroli
ENSODEG00000020549	-	100	93.525	ENSMUSG00000031848	Lsm4	100	93.525	Mus_musculus
ENSODEG00000020549	-	100	93.525	MGP_PahariEiJ_G0021623	Lsm4	100	93.525	Mus_pahari
ENSODEG00000020549	-	100	93.525	MGP_SPRETEiJ_G0032276	Lsm4	100	93.525	Mus_spretus
ENSODEG00000020549	-	100	97.122	ENSMPUG00000015589	LSM4	100	97.122	Mustela_putorius_furo
ENSODEG00000020549	-	99	97.101	ENSMLUG00000004010	LSM4	99	97.101	Myotis_lucifugus
ENSODEG00000020549	-	100	93.525	ENSNGAG00000008644	Lsm4	100	93.525	Nannospalax_galili
ENSODEG00000020549	-	71	96.939	ENSNBRG00000022150	lsm4	54	98.851	Neolamprologus_brichardi
ENSODEG00000020549	-	89	90.323	ENSMEUG00000013229	LSM4	100	90.323	Notamacropus_eugenii
ENSODEG00000020549	-	89	91.129	ENSOPRG00000005575	LSM4	100	91.129	Ochotona_princeps
ENSODEG00000020549	-	79	83.065	ENSONIG00000012724	lsm4	60	98.864	Oreochromis_niloticus
ENSODEG00000020549	-	63	93.407	ENSOANG00000007434	LSM4	78	93.407	Ornithorhynchus_anatinus
ENSODEG00000020549	-	99	83.688	ENSORLG00000008391	lsm4	97	74.820	Oryzias_latipes
ENSODEG00000020549	-	99	84.397	ENSORLG00020014829	lsm4	97	74.820	Oryzias_latipes_hni
ENSODEG00000020549	-	99	84.397	ENSORLG00015010205	lsm4	97	74.820	Oryzias_latipes_hsok
ENSODEG00000020549	-	100	82.014	ENSOMEG00000003606	lsm4	61	97.727	Oryzias_melastigma
ENSODEG00000020549	-	71	97.980	ENSOGAG00000027992	LSM4	60	100.000	Otolemur_garnettii
ENSODEG00000020549	-	86	96.639	ENSOARG00000012553	LSM4	94	96.639	Ovis_aries
ENSODEG00000020549	-	100	97.122	ENSPPAG00000044045	-	100	97.122	Pan_paniscus
ENSODEG00000020549	-	100	97.122	ENSPPRG00000018264	LSM4	100	97.122	Panthera_pardus
ENSODEG00000020549	-	99	97.101	ENSPTIG00000006306	LSM4	100	97.101	Panthera_tigris_altaica
ENSODEG00000020549	-	100	97.122	ENSPTRG00000031470	LSM4	100	97.122	Pan_troglodytes
ENSODEG00000020549	-	100	97.122	ENSPANG00000014399	LSM4	100	97.122	Papio_anubis
ENSODEG00000020549	-	99	81.022	ENSPKIG00000006154	lsm4	62	98.864	Paramormyrops_kingsleyae
ENSODEG00000020549	-	99	79.710	ENSPSIG00000012358	LSM4	100	88.406	Pelodiscus_sinensis
ENSODEG00000020549	-	100	93.525	ENSPEMG00000001358	Lsm4	100	93.525	Peromyscus_maniculatus_bairdii
ENSODEG00000020549	-	99	81.295	ENSPLAG00000016267	lsm4	62	98.864	Poecilia_latipinna
ENSODEG00000020549	-	99	83.571	ENSPMEG00000016378	lsm4	63	98.851	Poecilia_mexicana
ENSODEG00000020549	-	100	97.122	ENSPPYG00000009736	LSM4	100	97.122	Pongo_abelii
ENSODEG00000020549	-	89	95.161	ENSPCAG00000008513	LSM4	100	95.161	Procavia_capensis
ENSODEG00000020549	-	100	96.403	ENSPCOG00000019837	LSM4	100	96.403	Propithecus_coquereli
ENSODEG00000020549	-	100	97.122	ENSPVAG00000015383	LSM4	100	97.122	Pteropus_vampyrus
ENSODEG00000020549	-	99	81.818	ENSPNYG00000016794	lsm4	60	98.864	Pundamilia_nyererei
ENSODEG00000020549	-	96	82.090	ENSPNAG00000016598	lsm4	65	98.851	Pygocentrus_nattereri
ENSODEG00000020549	-	100	93.525	ENSRNOG00000019572	Lsm4	100	93.525	Rattus_norvegicus
ENSODEG00000020549	-	100	97.122	ENSRBIG00000024717	LSM4	100	97.122	Rhinopithecus_bieti
ENSODEG00000020549	-	100	97.122	ENSRROG00000045706	LSM4	100	97.122	Rhinopithecus_roxellana
ENSODEG00000020549	-	60	40.860	YER112W	LSM4	51	39.583	Saccharomyces_cerevisiae
ENSODEG00000020549	-	90	96.800	ENSSBOG00000022455	LSM4	100	96.800	Saimiri_boliviensis_boliviensis
ENSODEG00000020549	-	100	94.245	ENSSHAG00000011559	LSM4	100	94.245	Sarcophilus_harrisii
ENSODEG00000020549	-	99	79.562	ENSSFOG00015021067	lsm4	62	98.864	Scleropages_formosus
ENSODEG00000020549	-	99	71.831	ENSSMAG00000021020	lsm4	95	72.535	Scophthalmus_maximus
ENSODEG00000020549	-	71	96.970	ENSSDUG00000009588	lsm4	53	98.864	Seriola_dumerili
ENSODEG00000020549	-	71	96.970	ENSSLDG00000006827	lsm4	52	98.864	Seriola_lalandi_dorsalis
ENSODEG00000020549	-	63	98.851	ENSSPUG00000010166	LSM4	56	98.851	Sphenodon_punctatus
ENSODEG00000020549	-	71	96.970	ENSSPAG00000011615	lsm4	58	98.864	Stegastes_partitus
ENSODEG00000020549	-	100	97.122	ENSSSCG00000034314	LSM4	100	97.122	Sus_scrofa
ENSODEG00000020549	-	99	82.857	ENSTRUG00000021737	lsm4	62	96.591	Takifugu_rubripes
ENSODEG00000020549	-	99	80.714	ENSTNIG00000010191	lsm4	61	97.727	Tetraodon_nigroviridis
ENSODEG00000020549	-	99	97.101	ENSUAMG00000000665	LSM4	99	97.101	Ursus_americanus
ENSODEG00000020549	-	100	97.122	ENSUMAG00000009013	LSM4	100	97.122	Ursus_maritimus
ENSODEG00000020549	-	99	97.101	ENSVVUG00000008136	LSM4	71	97.101	Vulpes_vulpes
ENSODEG00000020549	-	100	89.928	ENSXETG00000024933	lsm4	100	87.770	Xenopus_tropicalis