EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOGAG00000003273 (Gene tree)
Gene ID: 100950617
Gene Symbol: USB1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Otolemur_garnettii
Status: putative
Strand: Plus strand
Length: 14713 bases
Position: chrGL873577.1:10210327-10225039
Accession: 100950617
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOGAP00000002920	HVSL	PF09749.9	3.4e-54	1	2
ENSOGAP00000002920	HVSL	PF09749.9	3.4e-54	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOGAT00000003275	USB1-201	744	-	ENSOGAP00000002920	247 (aa)	XP_003792634	H0WMF7

Gene Model

Click here to download ENSOGAG00000003273's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOGAG00000003273's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOGAG00000003273	USB1	100	89.069	ENSG00000103005	USB1	100	89.069	Homo_sapiens
ENSOGAG00000003273	USB1	98	47.893	ENSAPOG00000011942	usb1	82	51.613	Acanthochromis_polyacanthus
ENSOGAG00000003273	USB1	100	77.323	ENSAMEG00000017205	USB1	100	76.208	Ailuropoda_melanoleuca
ENSOGAG00000003273	USB1	88	49.153	ENSACIG00000012234	usb1	87	49.153	Amphilophus_citrinellus
ENSOGAG00000003273	USB1	85	50.220	ENSAOCG00000014831	usb1	83	48.511	Amphiprion_ocellaris
ENSOGAG00000003273	USB1	85	50.661	ENSAPEG00000000296	usb1	83	48.936	Amphiprion_percula
ENSOGAG00000003273	USB1	94	47.012	ENSATEG00000009348	usb1	99	45.714	Anabas_testudineus
ENSOGAG00000003273	USB1	83	64.317	ENSAPLG00000002756	USB1	100	64.159	Anas_platyrhynchos
ENSOGAG00000003273	USB1	85	58.952	ENSACAG00000015481	USB1	100	58.952	Anolis_carolinensis
ENSOGAG00000003273	USB1	100	87.045	ENSANAG00000035640	USB1	100	87.045	Aotus_nancymaae
ENSOGAG00000003273	USB1	94	46.586	ENSACLG00000020586	usb1	79	50.000	Astatotilapia_calliptera
ENSOGAG00000003273	USB1	84	48.889	ENSAMXG00000040146	usb1	75	48.889	Astyanax_mexicanus
ENSOGAG00000003273	USB1	100	80.000	ENSBTAG00000015758	USB1	100	80.000	Bos_taurus
ENSOGAG00000003273	USB1	100	84.231	ENSCJAG00000011733	USB1	95	90.000	Callithrix_jacchus
ENSOGAG00000003273	USB1	99	75.368	ENSCAFG00000008556	USB1	73	73.897	Canis_familiaris
ENSOGAG00000003273	USB1	99	76.226	ENSCAFG00020009263	USB1	99	76.226	Canis_lupus_dingo
ENSOGAG00000003273	USB1	100	79.845	ENSCHIG00000024290	USB1	100	79.845	Capra_hircus
ENSOGAG00000003273	USB1	100	89.069	ENSTSYG00000006997	USB1	100	89.069	Carlito_syrichta
ENSOGAG00000003273	USB1	87	72.897	ENSCAPG00000009057	USB1	100	72.897	Cavia_aperea
ENSOGAG00000003273	USB1	100	77.612	ENSCPOG00000014325	USB1	100	77.612	Cavia_porcellus
ENSOGAG00000003273	USB1	100	88.664	ENSCCAG00000022132	USB1	100	88.664	Cebus_capucinus
ENSOGAG00000003273	USB1	100	87.449	ENSCATG00000032174	USB1	100	87.449	Cercocebus_atys
ENSOGAG00000003273	USB1	64	77.841	ENSCLAG00000007363	USB1	100	77.841	Chinchilla_lanigera
ENSOGAG00000003273	USB1	100	82.264	ENSCSAG00000004783	USB1	100	82.264	Chlorocebus_sabaeus
ENSOGAG00000003273	USB1	91	60.494	ENSCPBG00000026943	USB1	100	58.065	Chrysemys_picta_bellii
ENSOGAG00000003273	USB1	100	87.449	ENSCANG00000037135	USB1	100	87.449	Colobus_angolensis_palliatus
ENSOGAG00000003273	USB1	100	77.612	ENSCGRG00001011243	USB1	100	77.239	Cricetulus_griseus_chok1gshd
ENSOGAG00000003273	USB1	100	77.612	ENSCGRG00000013252	USB1	100	77.239	Cricetulus_griseus_crigri
ENSOGAG00000003273	USB1	98	44.891	ENSCSEG00000013881	usb1	85	46.809	Cynoglossus_semilaevis
ENSOGAG00000003273	USB1	83	47.807	ENSCVAG00000009252	usb1	97	48.246	Cyprinodon_variegatus
ENSOGAG00000003273	USB1	89	46.862	ENSDARG00000003841	usb1	87	46.862	Danio_rerio
ENSOGAG00000003273	USB1	100	76.226	ENSDORG00000001888	Usb1	100	76.226	Dipodomys_ordii
ENSOGAG00000003273	USB1	75	38.095	FBgn0037713	CG16790	78	38.095	Drosophila_melanogaster
ENSOGAG00000003273	USB1	100	64.419	ENSETEG00000019682	USB1	100	64.419	Echinops_telfairi
ENSOGAG00000003273	USB1	83	45.045	ENSEBUG00000005889	usb1	78	45.045	Eptatretus_burgeri
ENSOGAG00000003273	USB1	100	80.377	ENSEASG00005005484	USB1	100	80.377	Equus_asinus_asinus
ENSOGAG00000003273	USB1	100	80.377	ENSECAG00000019493	USB1	91	80.377	Equus_caballus
ENSOGAG00000003273	USB1	100	59.623	ENSEEUG00000000154	USB1	100	59.623	Erinaceus_europaeus
ENSOGAG00000003273	USB1	94	43.600	ENSELUG00000010974	usb1	84	46.053	Esox_lucius
ENSOGAG00000003273	USB1	100	85.542	ENSFCAG00000002693	USB1	100	85.542	Felis_catus
ENSOGAG00000003273	USB1	83	62.054	ENSFALG00000006876	USB1	99	58.427	Ficedula_albicollis
ENSOGAG00000003273	USB1	100	79.775	ENSFDAG00000010052	USB1	100	79.775	Fukomys_damarensis
ENSOGAG00000003273	USB1	84	44.856	ENSFHEG00000012334	usb1	80	48.020	Fundulus_heteroclitus
ENSOGAG00000003273	USB1	83	48.430	ENSGMOG00000004228	usb1	99	48.430	Gadus_morhua
ENSOGAG00000003273	USB1	83	62.500	ENSGALG00000035604	USB1	100	60.150	Gallus_gallus
ENSOGAG00000003273	USB1	98	46.909	ENSGAFG00000021890	usb1	87	47.737	Gambusia_affinis
ENSOGAG00000003273	USB1	83	48.661	ENSGACG00000003257	usb1	81	48.661	Gasterosteus_aculeatus
ENSOGAG00000003273	USB1	100	59.489	ENSGAGG00000022572	USB1	100	58.242	Gopherus_agassizii
ENSOGAG00000003273	USB1	100	88.664	ENSGGOG00000017147	USB1	100	88.664	Gorilla_gorilla
ENSOGAG00000003273	USB1	94	47.390	ENSHBUG00000009823	usb1	81	50.220	Haplochromis_burtoni
ENSOGAG00000003273	USB1	100	79.775	ENSHGLG00000016078	USB1	98	79.775	Heterocephalus_glaber_female
ENSOGAG00000003273	USB1	100	79.775	ENSHGLG00100005562	USB1	98	79.775	Heterocephalus_glaber_male
ENSOGAG00000003273	USB1	98	47.876	ENSHCOG00000015633	usb1	99	47.876	Hippocampus_comes
ENSOGAG00000003273	USB1	98	45.517	ENSIPUG00000008601	usb1	78	50.893	Ictalurus_punctatus
ENSOGAG00000003273	USB1	100	78.022	ENSSTOG00000007548	USB1	100	78.022	Ictidomys_tridecemlineatus
ENSOGAG00000003273	USB1	100	80.150	ENSJJAG00000021859	Usb1	100	80.150	Jaculus_jaculus
ENSOGAG00000003273	USB1	85	48.458	ENSKMAG00000007200	usb1	80	48.458	Kryptolebias_marmoratus
ENSOGAG00000003273	USB1	86	44.589	ENSLBEG00000008452	usb1	64	48.947	Labrus_bergylta
ENSOGAG00000003273	USB1	82	53.097	ENSLACG00000000105	USB1	78	53.540	Latimeria_chalumnae
ENSOGAG00000003273	USB1	95	50.593	ENSLOCG00000000465	usb1	87	50.813	Lepisosteus_oculatus
ENSOGAG00000003273	USB1	100	60.595	ENSLAFG00000002267	USB1	100	61.255	Loxodonta_africana
ENSOGAG00000003273	USB1	100	87.854	ENSMFAG00000003926	USB1	100	87.854	Macaca_fascicularis
ENSOGAG00000003273	USB1	100	87.854	ENSMMUG00000022669	USB1	100	87.854	Macaca_mulatta
ENSOGAG00000003273	USB1	100	87.449	ENSMNEG00000042487	USB1	100	87.449	Macaca_nemestrina
ENSOGAG00000003273	USB1	100	87.854	ENSMLEG00000028756	USB1	100	87.854	Mandrillus_leucophaeus
ENSOGAG00000003273	USB1	98	46.403	ENSMAMG00000015092	usb1	84	48.511	Mastacembelus_armatus
ENSOGAG00000003273	USB1	94	46.586	ENSMZEG00005010008	usb1	80	50.000	Maylandia_zebra
ENSOGAG00000003273	USB1	100	77.528	ENSMAUG00000007832	Usb1	100	77.528	Mesocricetus_auratus
ENSOGAG00000003273	USB1	100	92.713	ENSMICG00000004900	USB1	100	92.713	Microcebus_murinus
ENSOGAG00000003273	USB1	100	76.866	ENSMOCG00000022647	Usb1	100	76.866	Microtus_ochrogaster
ENSOGAG00000003273	USB1	85	49.123	ENSMMOG00000000490	usb1	88	49.123	Mola_mola
ENSOGAG00000003273	USB1	100	61.194	ENSMODG00000014067	USB1	100	59.341	Monodelphis_domestica
ENSOGAG00000003273	USB1	85	51.542	ENSMALG00000005930	usb1	80	51.542	Monopterus_albus
ENSOGAG00000003273	USB1	100	74.906	MGP_CAROLIEiJ_G0031421	Usb1	98	77.477	Mus_caroli
ENSOGAG00000003273	USB1	100	75.655	ENSMUSG00000031792	Usb1	100	74.157	Mus_musculus
ENSOGAG00000003273	USB1	100	75.281	MGP_PahariEiJ_G0023019	Usb1	100	73.783	Mus_pahari
ENSOGAG00000003273	USB1	100	74.157	MGP_SPRETEiJ_G0032540	Usb1	100	73.408	Mus_spretus
ENSOGAG00000003273	USB1	100	75.836	ENSMPUG00000004684	USB1	96	74.349	Mustela_putorius_furo
ENSOGAG00000003273	USB1	86	82.684	ENSMLUG00000007400	USB1	100	82.684	Myotis_lucifugus
ENSOGAG00000003273	USB1	100	77.695	ENSNGAG00000009703	Usb1	100	77.695	Nannospalax_galili
ENSOGAG00000003273	USB1	87	51.628	ENSNBRG00000008747	usb1	99	52.970	Neolamprologus_brichardi
ENSOGAG00000003273	USB1	94	88.312	ENSNLEG00000003340	USB1	100	87.931	Nomascus_leucogenys
ENSOGAG00000003273	USB1	60	61.039	ENSMEUG00000003328	-	100	60.256	Notamacropus_eugenii
ENSOGAG00000003273	USB1	62	88.235	ENSOPRG00000011803	USB1	66	88.235	Ochotona_princeps
ENSOGAG00000003273	USB1	100	76.030	ENSODEG00000016214	USB1	100	76.030	Octodon_degus
ENSOGAG00000003273	USB1	98	45.263	ENSONIG00000011063	usb1	81	49.780	Oreochromis_niloticus
ENSOGAG00000003273	USB1	83	67.111	ENSOANG00000012118	USB1	94	67.111	Ornithorhynchus_anatinus
ENSOGAG00000003273	USB1	83	48.214	ENSORLG00000012479	usb1	82	48.214	Oryzias_latipes
ENSOGAG00000003273	USB1	83	48.214	ENSORLG00020018671	usb1	99	44.444	Oryzias_latipes_hni
ENSOGAG00000003273	USB1	83	48.214	ENSORLG00015009679	usb1	83	48.214	Oryzias_latipes_hsok
ENSOGAG00000003273	USB1	83	48.661	ENSOMEG00000012930	usb1	81	48.661	Oryzias_melastigma
ENSOGAG00000003273	USB1	95	76.285	ENSOARG00000001107	USB1	94	77.642	Ovis_aries
ENSOGAG00000003273	USB1	100	89.069	ENSPPAG00000042137	USB1	100	89.069	Pan_paniscus
ENSOGAG00000003273	USB1	100	85.141	ENSPPRG00000024797	USB1	100	85.141	Panthera_pardus
ENSOGAG00000003273	USB1	100	85.141	ENSPTIG00000007506	USB1	100	85.141	Panthera_tigris_altaica
ENSOGAG00000003273	USB1	100	88.664	ENSPTRG00000008172	USB1	100	88.664	Pan_troglodytes
ENSOGAG00000003273	USB1	100	87.854	ENSPANG00000025138	USB1	100	87.854	Papio_anubis
ENSOGAG00000003273	USB1	96	48.828	ENSPKIG00000015109	usb1	80	50.633	Paramormyrops_kingsleyae
ENSOGAG00000003273	USB1	83	52.915	ENSPSIG00000004305	USB1	100	52.915	Pelodiscus_sinensis
ENSOGAG00000003273	USB1	84	48.444	ENSPMGG00000017725	usb1	86	48.444	Periophthalmus_magnuspinnatus
ENSOGAG00000003273	USB1	100	76.103	ENSPEMG00000016183	Usb1	100	76.103	Peromyscus_maniculatus_bairdii
ENSOGAG00000003273	USB1	87	45.532	ENSPMAG00000000462	usb1	99	45.532	Petromyzon_marinus
ENSOGAG00000003273	USB1	98	45.290	ENSPFOG00000011130	usb1	85	47.881	Poecilia_formosa
ENSOGAG00000003273	USB1	98	45.290	ENSPLAG00000009820	usb1	85	47.881	Poecilia_latipinna
ENSOGAG00000003273	USB1	98	45.487	ENSPMEG00000006402	usb1	88	47.154	Poecilia_mexicana
ENSOGAG00000003273	USB1	84	45.267	ENSPREG00000001047	usb1	85	48.113	Poecilia_reticulata
ENSOGAG00000003273	USB1	94	78.571	ENSPPYG00000007401	USB1	100	78.571	Pongo_abelii
ENSOGAG00000003273	USB1	100	91.903	ENSPCOG00000022612	USB1	100	91.903	Propithecus_coquereli
ENSOGAG00000003273	USB1	100	76.981	ENSPVAG00000004613	USB1	100	76.981	Pteropus_vampyrus
ENSOGAG00000003273	USB1	94	50.649	ENSPNYG00000022262	usb1	79	54.067	Pundamilia_nyererei
ENSOGAG00000003273	USB1	83	48.661	ENSPNAG00000011736	usb1	76	48.661	Pygocentrus_nattereri
ENSOGAG00000003273	USB1	100	76.404	ENSRNOG00000013216	Usb1	100	74.906	Rattus_norvegicus
ENSOGAG00000003273	USB1	100	87.854	ENSRBIG00000044466	USB1	100	87.854	Rhinopithecus_bieti
ENSOGAG00000003273	USB1	100	87.854	ENSRROG00000029211	USB1	100	87.854	Rhinopithecus_roxellana
ENSOGAG00000003273	USB1	100	87.449	ENSSBOG00000029362	USB1	100	87.449	Saimiri_boliviensis_boliviensis
ENSOGAG00000003273	USB1	81	66.210	ENSSHAG00000006993	USB1	94	64.979	Sarcophilus_harrisii
ENSOGAG00000003273	USB1	99	48.092	ENSSFOG00015023663	usb1	73	51.948	Scleropages_formosus
ENSOGAG00000003273	USB1	98	46.739	ENSSMAG00000015834	usb1	84	48.193	Scophthalmus_maximus
ENSOGAG00000003273	USB1	84	51.770	ENSSDUG00000002949	usb1	84	51.770	Seriola_dumerili
ENSOGAG00000003273	USB1	94	48.207	ENSSLDG00000014174	usb1	85	49.180	Seriola_lalandi_dorsalis
ENSOGAG00000003273	USB1	79	62.150	ENSSPUG00000006741	USB1	100	62.150	Sphenodon_punctatus
ENSOGAG00000003273	USB1	98	42.756	ENSSPAG00000007484	usb1	99	43.816	Stegastes_partitus
ENSOGAG00000003273	USB1	100	79.182	ENSSSCG00000002807	USB1	100	77.695	Sus_scrofa
ENSOGAG00000003273	USB1	79	63.208	ENSTGUG00000004792	USB1	87	62.162	Taeniopygia_guttata
ENSOGAG00000003273	USB1	98	44.981	ENSTRUG00000021069	usb1	89	45.528	Takifugu_rubripes
ENSOGAG00000003273	USB1	98	44.528	ENSTNIG00000000626	usb1	84	46.903	Tetraodon_nigroviridis
ENSOGAG00000003273	USB1	87	53.448	ENSTBEG00000001507	USB1	100	53.448	Tupaia_belangeri
ENSOGAG00000003273	USB1	100	77.323	ENSUAMG00000016823	USB1	100	76.580	Ursus_americanus
ENSOGAG00000003273	USB1	79	78.505	ENSUMAG00000021369	USB1	100	78.505	Ursus_maritimus
ENSOGAG00000003273	USB1	75	51.724	ENSVPAG00000009834	-	59	72.500	Vicugna_pacos
ENSOGAG00000003273	USB1	99	76.119	ENSVVUG00000023700	USB1	91	77.824	Vulpes_vulpes
ENSOGAG00000003273	USB1	81	51.376	ENSXETG00000013795	usb1	89	51.570	Xenopus_tropicalis
ENSOGAG00000003273	USB1	94	47.200	ENSXMAG00000024687	usb1	70	47.907	Xiphophorus_maculatus