EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOGAG00000004483 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Otolemur_garnettii
Status: putative
Strand: Plus strand
Length: 281897 bases
Position: chrGL873664.1:3616757-3898653
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOGAP00000004003	EST1	PF10374.9	2.2e-15	1	1
ENSOGAP00000004003	EST1_DNA_bind	PF10373.9	2e-60	1	1
ENSOGAP00000004003	PIN_4	PF13638.6	1.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOGAT00000004487	SMG6-201	4279	-	ENSOGAP00000004003	1420 (aa)	-	H0WQ01

Gene Model

Click here to download ENSOGAG00000004483's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOGAG00000004483's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOGAG00000004483	SMG6	100	93.944	ENSG00000070366	SMG6	100	100.000	Homo_sapiens
ENSOGAG00000004483	SMG6	74	58.829	ENSAPOG00000019448	smg6	74	54.992	Acanthochromis_polyacanthus
ENSOGAG00000004483	SMG6	100	93.873	ENSAMEG00000007632	SMG6	100	93.873	Ailuropoda_melanoleuca
ENSOGAG00000004483	SMG6	72	60.681	ENSACIG00000012997	smg6	98	50.000	Amphilophus_citrinellus
ENSOGAG00000004483	SMG6	74	58.630	ENSAOCG00000002630	smg6	74	54.821	Amphiprion_ocellaris
ENSOGAG00000004483	SMG6	74	58.719	ENSAPEG00000019101	smg6	74	55.382	Amphiprion_percula
ENSOGAG00000004483	SMG6	83	55.105	ENSATEG00000006483	smg6	73	55.321	Anabas_testudineus
ENSOGAG00000004483	SMG6	87	57.075	ENSACAG00000011783	SMG6	99	57.683	Anolis_carolinensis
ENSOGAG00000004483	SMG6	100	93.873	ENSANAG00000035760	SMG6	100	93.873	Aotus_nancymaae
ENSOGAG00000004483	SMG6	71	59.375	ENSACLG00000005288	smg6	84	53.675	Astatotilapia_calliptera
ENSOGAG00000004483	SMG6	72	62.019	ENSAMXG00000017326	smg6	99	50.725	Astyanax_mexicanus
ENSOGAG00000004483	SMG6	100	93.310	ENSBTAG00000000267	SMG6	100	93.310	Bos_taurus
ENSOGAG00000004483	SMG6	100	93.662	ENSCJAG00000001820	SMG6	100	93.662	Callithrix_jacchus
ENSOGAG00000004483	SMG6	100	93.944	ENSCAFG00000019260	SMG6	100	93.944	Canis_familiaris
ENSOGAG00000004483	SMG6	100	93.944	ENSCAFG00020009770	SMG6	100	93.944	Canis_lupus_dingo
ENSOGAG00000004483	SMG6	100	93.239	ENSCHIG00000021998	SMG6	100	93.239	Capra_hircus
ENSOGAG00000004483	SMG6	100	94.225	ENSTSYG00000003406	SMG6	100	97.847	Carlito_syrichta
ENSOGAG00000004483	SMG6	98	77.570	ENSCAPG00000016197	SMG6	99	82.904	Cavia_aperea
ENSOGAG00000004483	SMG6	100	91.485	ENSCPOG00000014878	SMG6	100	91.485	Cavia_porcellus
ENSOGAG00000004483	SMG6	100	93.944	ENSCCAG00000035801	SMG6	100	93.944	Cebus_capucinus
ENSOGAG00000004483	SMG6	100	94.085	ENSCATG00000031956	SMG6	100	94.085	Cercocebus_atys
ENSOGAG00000004483	SMG6	100	93.521	ENSCLAG00000006748	SMG6	100	93.521	Chinchilla_lanigera
ENSOGAG00000004483	SMG6	100	94.718	ENSCSAG00000013800	SMG6	100	94.718	Chlorocebus_sabaeus
ENSOGAG00000004483	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSOGAG00000004483	SMG6	100	72.230	ENSCPBG00000020369	SMG6	100	72.784	Chrysemys_picta_bellii
ENSOGAG00000004483	SMG6	98	94.388	ENSCANG00000031764	SMG6	100	97.260	Colobus_angolensis_palliatus
ENSOGAG00000004483	SMG6	55	89.103	ENSCGRG00001019595	Smg6	100	88.889	Cricetulus_griseus_chok1gshd
ENSOGAG00000004483	SMG6	98	85.529	ENSCGRG00000007782	Smg6	100	85.673	Cricetulus_griseus_crigri
ENSOGAG00000004483	SMG6	83	58.690	ENSCSEG00000012757	smg6	88	53.187	Cynoglossus_semilaevis
ENSOGAG00000004483	SMG6	72	57.919	ENSCVAG00000012789	smg6	74	53.846	Cyprinodon_variegatus
ENSOGAG00000004483	SMG6	100	50.500	ENSDARG00000100481	smg6	100	50.802	Danio_rerio
ENSOGAG00000004483	SMG6	100	92.958	ENSDNOG00000048283	SMG6	100	92.958	Dasypus_novemcinctus
ENSOGAG00000004483	SMG6	100	89.481	ENSDORG00000016614	Smg6	94	99.099	Dipodomys_ordii
ENSOGAG00000004483	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSOGAG00000004483	SMG6	68	50.243	ENSEBUG00000005059	smg6	66	49.806	Eptatretus_burgeri
ENSOGAG00000004483	SMG6	99	94.006	ENSEASG00005009318	SMG6	99	94.006	Equus_asinus_asinus
ENSOGAG00000004483	SMG6	99	93.724	ENSECAG00000006519	SMG6	99	93.724	Equus_caballus
ENSOGAG00000004483	SMG6	100	82.324	ENSEEUG00000003493	SMG6	100	82.324	Erinaceus_europaeus
ENSOGAG00000004483	SMG6	71	60.185	ENSELUG00000005934	smg6	69	55.209	Esox_lucius
ENSOGAG00000004483	SMG6	100	94.577	ENSFCAG00000028817	SMG6	100	94.577	Felis_catus
ENSOGAG00000004483	SMG6	98	72.017	ENSFALG00000006538	SMG6	100	72.088	Ficedula_albicollis
ENSOGAG00000004483	SMG6	100	92.958	ENSFDAG00000015106	SMG6	100	92.958	Fukomys_damarensis
ENSOGAG00000004483	SMG6	83	52.763	ENSFHEG00000013282	smg6	75	53.162	Fundulus_heteroclitus
ENSOGAG00000004483	SMG6	61	69.159	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSOGAG00000004483	SMG6	100	71.685	ENSGALG00000003108	SMG6	98	71.903	Gallus_gallus
ENSOGAG00000004483	SMG6	83	53.918	ENSGAFG00000000379	smg6	74	54.176	Gambusia_affinis
ENSOGAG00000004483	SMG6	90	54.052	ENSGACG00000020521	smg6	99	53.487	Gasterosteus_aculeatus
ENSOGAG00000004483	SMG6	98	71.793	ENSGAGG00000025617	SMG6	100	72.360	Gopherus_agassizii
ENSOGAG00000004483	SMG6	100	94.789	ENSGGOG00000017156	SMG6	100	94.789	Gorilla_gorilla
ENSOGAG00000004483	SMG6	87	52.235	ENSHBUG00000021311	smg6	77	53.886	Haplochromis_burtoni
ENSOGAG00000004483	SMG6	100	92.827	ENSHGLG00000012882	SMG6	100	92.827	Heterocephalus_glaber_female
ENSOGAG00000004483	SMG6	100	92.897	ENSHGLG00100017815	SMG6	100	92.897	Heterocephalus_glaber_male
ENSOGAG00000004483	SMG6	71	59.295	ENSHCOG00000008761	smg6	97	53.716	Hippocampus_comes
ENSOGAG00000004483	SMG6	100	50.234	ENSIPUG00000012493	smg6	100	50.000	Ictalurus_punctatus
ENSOGAG00000004483	SMG6	100	94.648	ENSSTOG00000028127	SMG6	100	94.648	Ictidomys_tridecemlineatus
ENSOGAG00000004483	SMG6	79	89.750	ENSJJAG00000015367	Smg6	95	87.792	Jaculus_jaculus
ENSOGAG00000004483	SMG6	74	58.954	ENSKMAG00000000279	smg6	76	54.343	Kryptolebias_marmoratus
ENSOGAG00000004483	SMG6	86	52.671	ENSLBEG00000002184	smg6	76	52.893	Labrus_bergylta
ENSOGAG00000004483	SMG6	55	57.594	ENSLACG00000000806	-	98	58.931	Latimeria_chalumnae
ENSOGAG00000004483	SMG6	74	65.342	ENSLOCG00000006448	smg6	99	55.319	Lepisosteus_oculatus
ENSOGAG00000004483	SMG6	100	93.169	ENSLAFG00000001261	SMG6	100	93.169	Loxodonta_africana
ENSOGAG00000004483	SMG6	100	94.577	ENSMFAG00000003394	SMG6	100	94.577	Macaca_fascicularis
ENSOGAG00000004483	SMG6	100	94.507	ENSMMUG00000023161	SMG6	100	94.507	Macaca_mulatta
ENSOGAG00000004483	SMG6	100	89.747	ENSMNEG00000044592	SMG6	100	89.747	Macaca_nemestrina
ENSOGAG00000004483	SMG6	98	91.931	ENSMLEG00000029353	SMG6	99	91.931	Mandrillus_leucophaeus
ENSOGAG00000004483	SMG6	85	55.368	ENSMAMG00000020119	smg6	98	49.011	Mastacembelus_armatus
ENSOGAG00000004483	SMG6	71	59.141	ENSMZEG00005024736	smg6	77	53.783	Maylandia_zebra
ENSOGAG00000004483	SMG6	74	66.228	ENSMGAG00000005401	-	99	66.228	Meleagris_gallopavo
ENSOGAG00000004483	SMG6	100	96.479	ENSMICG00000012913	SMG6	100	96.479	Microcebus_murinus
ENSOGAG00000004483	SMG6	100	47.434	ENSMMOG00000010883	smg6	100	47.957	Mola_mola
ENSOGAG00000004483	SMG6	100	86.367	ENSMODG00000010622	SMG6	100	86.367	Monodelphis_domestica
ENSOGAG00000004483	SMG6	83	54.806	ENSMALG00000001106	smg6	73	55.058	Monopterus_albus
ENSOGAG00000004483	SMG6	100	92.113	MGP_CAROLIEiJ_G0016729	Smg6	100	92.113	Mus_caroli
ENSOGAG00000004483	SMG6	100	91.761	ENSMUSG00000038290	Smg6	100	91.761	Mus_musculus
ENSOGAG00000004483	SMG6	100	91.761	MGP_PahariEiJ_G0017866	Smg6	100	91.761	Mus_pahari
ENSOGAG00000004483	SMG6	100	91.972	MGP_SPRETEiJ_G0017572	Smg6	100	91.972	Mus_spretus
ENSOGAG00000004483	SMG6	100	93.803	ENSMPUG00000013046	SMG6	100	93.803	Mustela_putorius_furo
ENSOGAG00000004483	SMG6	100	93.239	ENSMLUG00000005739	SMG6	100	93.239	Myotis_lucifugus
ENSOGAG00000004483	SMG6	98	91.367	ENSNGAG00000007287	Smg6	100	91.367	Nannospalax_galili
ENSOGAG00000004483	SMG6	88	51.448	ENSNBRG00000009511	smg6	85	53.130	Neolamprologus_brichardi
ENSOGAG00000004483	SMG6	98	93.978	ENSNLEG00000017171	SMG6	100	97.847	Nomascus_leucogenys
ENSOGAG00000004483	SMG6	98	82.699	ENSMEUG00000015804	SMG6	100	82.699	Notamacropus_eugenii
ENSOGAG00000004483	SMG6	62	91.441	ENSOPRG00000000579	SMG6	85	97.368	Ochotona_princeps
ENSOGAG00000004483	SMG6	100	86.217	ENSODEG00000008038	SMG6	100	84.972	Octodon_degus
ENSOGAG00000004483	SMG6	100	50.527	ENSONIG00000005594	smg6	100	51.800	Oreochromis_niloticus
ENSOGAG00000004483	SMG6	100	93.460	ENSOCUG00000013018	SMG6	100	93.671	Oryctolagus_cuniculus
ENSOGAG00000004483	SMG6	73	57.796	ENSORLG00000003317	smg6	74	54.588	Oryzias_latipes
ENSOGAG00000004483	SMG6	73	57.862	ENSORLG00020015343	smg6	74	54.481	Oryzias_latipes_hni
ENSOGAG00000004483	SMG6	83	54.173	ENSORLG00015020454	smg6	74	54.667	Oryzias_latipes_hsok
ENSOGAG00000004483	SMG6	83	53.501	ENSOMEG00000010838	smg6	75	54.137	Oryzias_melastigma
ENSOGAG00000004483	SMG6	100	91.485	ENSOARG00000015076	SMG6	100	93.074	Ovis_aries
ENSOGAG00000004483	SMG6	100	95.000	ENSPPAG00000043296	SMG6	100	95.000	Pan_paniscus
ENSOGAG00000004483	SMG6	100	94.648	ENSPPRG00000014581	SMG6	100	94.648	Panthera_pardus
ENSOGAG00000004483	SMG6	98	94.733	ENSPTIG00000008925	SMG6	100	98.434	Panthera_tigris_altaica
ENSOGAG00000004483	SMG6	100	94.789	ENSPTRG00000008544	SMG6	100	98.043	Pan_troglodytes
ENSOGAG00000004483	SMG6	100	94.437	ENSPANG00000024588	SMG6	100	94.437	Papio_anubis
ENSOGAG00000004483	SMG6	89	70.960	ENSPSIG00000006660	SMG6	96	71.038	Pelodiscus_sinensis
ENSOGAG00000004483	SMG6	98	60.870	ENSPMGG00000000844	smg6	100	60.870	Periophthalmus_magnuspinnatus
ENSOGAG00000004483	SMG6	100	93.169	ENSPEMG00000020707	Smg6	100	93.169	Peromyscus_maniculatus_bairdii
ENSOGAG00000004483	SMG6	100	51.475	ENSPFOG00000012035	smg6	100	51.475	Poecilia_formosa
ENSOGAG00000004483	SMG6	77	56.470	ENSPLAG00000017660	smg6	74	54.003	Poecilia_latipinna
ENSOGAG00000004483	SMG6	77	56.410	ENSPMEG00000000258	smg6	74	54.353	Poecilia_mexicana
ENSOGAG00000004483	SMG6	83	54.196	ENSPREG00000010066	smg6	74	54.154	Poecilia_reticulata
ENSOGAG00000004483	SMG6	100	89.389	ENSPPYG00000007790	SMG6	100	89.389	Pongo_abelii
ENSOGAG00000004483	SMG6	100	88.803	ENSPCAG00000000552	SMG6	100	88.803	Procavia_capensis
ENSOGAG00000004483	SMG6	100	96.197	ENSPCOG00000020925	SMG6	100	96.197	Propithecus_coquereli
ENSOGAG00000004483	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSOGAG00000004483	SMG6	88	53.711	ENSPNYG00000024151	smg6	83	55.487	Pundamilia_nyererei
ENSOGAG00000004483	SMG6	85	52.429	ENSPNAG00000015480	smg6	90	47.015	Pygocentrus_nattereri
ENSOGAG00000004483	SMG6	100	92.465	ENSRNOG00000003041	Smg6	97	96.254	Rattus_norvegicus
ENSOGAG00000004483	SMG6	100	94.507	ENSRBIG00000024746	SMG6	100	94.507	Rhinopithecus_bieti
ENSOGAG00000004483	SMG6	100	94.577	ENSRROG00000030423	SMG6	100	96.869	Rhinopithecus_roxellana
ENSOGAG00000004483	SMG6	100	94.014	ENSSBOG00000022518	SMG6	100	92.324	Saimiri_boliviensis_boliviensis
ENSOGAG00000004483	SMG6	98	85.950	ENSSHAG00000010045	SMG6	98	85.950	Sarcophilus_harrisii
ENSOGAG00000004483	SMG6	72	62.639	ENSSFOG00015005436	smg6	70	56.952	Scleropages_formosus
ENSOGAG00000004483	SMG6	83	55.504	ENSSMAG00000019777	smg6	73	55.105	Scophthalmus_maximus
ENSOGAG00000004483	SMG6	83	55.035	ENSSDUG00000016412	smg6	74	55.070	Seriola_dumerili
ENSOGAG00000004483	SMG6	80	54.120	ENSSLDG00000020747	smg6	77	54.126	Seriola_lalandi_dorsalis
ENSOGAG00000004483	SMG6	99	70.133	ENSSPUG00000007152	SMG6	99	70.133	Sphenodon_punctatus
ENSOGAG00000004483	SMG6	71	59.266	ENSSPAG00000015633	smg6	74	55.186	Stegastes_partitus
ENSOGAG00000004483	SMG6	100	92.892	ENSSSCG00000017826	SMG6	100	92.892	Sus_scrofa
ENSOGAG00000004483	SMG6	100	72.300	ENSTGUG00000005836	SMG6	100	72.440	Taeniopygia_guttata
ENSOGAG00000004483	SMG6	100	48.398	ENSTRUG00000000358	smg6	81	55.556	Takifugu_rubripes
ENSOGAG00000004483	SMG6	100	49.606	ENSTNIG00000016164	smg6	100	49.967	Tetraodon_nigroviridis
ENSOGAG00000004483	SMG6	100	89.155	ENSTBEG00000011424	SMG6	100	89.155	Tupaia_belangeri
ENSOGAG00000004483	SMG6	91	91.515	ENSTTRG00000001175	SMG6	91	91.515	Tursiops_truncatus
ENSOGAG00000004483	SMG6	100	94.027	ENSUAMG00000025152	SMG6	100	94.024	Ursus_americanus
ENSOGAG00000004483	SMG6	98	94.372	ENSUMAG00000009306	SMG6	100	94.372	Ursus_maritimus
ENSOGAG00000004483	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSOGAG00000004483	SMG6	100	93.803	ENSVVUG00000021727	SMG6	100	93.803	Vulpes_vulpes
ENSOGAG00000004483	SMG6	98	59.421	ENSXETG00000023799	SMG6	100	59.139	Xenopus_tropicalis
ENSOGAG00000004483	SMG6	83	54.836	ENSXCOG00000009867	smg6	74	55.032	Xiphophorus_couchianus
ENSOGAG00000004483	SMG6	83	54.225	ENSXMAG00000010321	smg6	74	54.183	Xiphophorus_maculatus