EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSOGAG00000004643 (Gene tree)
Gene ID
100945287
Gene Symbol
-
Alias
-
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Otolemur_garnettii
Status
putative
Strand
Minus strand
Length
21347 bases
Position
chrGL873629.1:3139544-3160890
Accession
100945287
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSOGAP00000004148Smg4_UPF3PF03467.156.8e-5411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSOGAT00000004646-1681-ENSOGAP00000004148470 (aa)XP_003797053H0WQC7
Gene Model
Click here to download ENSOGAG00000004643's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSOGAG00000004643's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSOGAG00000004643-9783.696ENSOGAG00000033003-10084.130
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSOGAG00000004643-8950.116ENSG00000169062UPF3A8948.035Homo_sapiens
ENSOGAG00000004643-10095.106ENSG00000125351UPF3B10095.106Homo_sapiens
ENSOGAG00000004643-9657.516ENSAPOG00000012775upf3b6465.049Acanthochromis_polyacanthus
ENSOGAG00000004643-9049.886ENSAMEG00000004259UPF3A6149.147Ailuropoda_melanoleuca
ENSOGAG00000004643-10095.532ENSAMEG00000000163UPF3B10095.532Ailuropoda_melanoleuca
ENSOGAG00000004643-9453.289ENSACIG00000013582upf3b9451.868Amphilophus_citrinellus
ENSOGAG00000004643-9655.870ENSAOCG00000000706upf3b6463.107Amphiprion_ocellaris
ENSOGAG00000004643-9657.484ENSAPEG00000005545upf3b6464.725Amphiprion_percula
ENSOGAG00000004643-9458.537ENSATEG00000018742upf3b6862.349Anabas_testudineus
ENSOGAG00000004643-8548.293ENSACAG00000001540UPF3A9451.214Anolis_carolinensis
ENSOGAG00000004643-9169.655ENSACAG00000003625UPF3B9966.597Anolis_carolinensis
ENSOGAG00000004643-5769.517ENSANAG00000033169-9567.883Aotus_nancymaae
ENSOGAG00000004643-8445.343ENSANAG00000021713UPF3A5254.962Aotus_nancymaae
ENSOGAG00000004643-10095.106ENSANAG00000021894-10096.283Aotus_nancymaae
ENSOGAG00000004643-10089.362ENSANAG00000025598-10088.298Aotus_nancymaae
ENSOGAG00000004643-9656.957ENSACLG00000001649upf3b6365.798Astatotilapia_calliptera
ENSOGAG00000004643-5761.210ENSAMXG00000000199upf3b8859.075Astyanax_mexicanus
ENSOGAG00000004643-6996.654ENSBTAG00000035615UPF3B10096.654Bos_taurus
ENSOGAG00000004643-8451.111ENSCJAG00000019102UPF3A5356.489Callithrix_jacchus
ENSOGAG00000004643-10094.468ENSCJAG00000004975UPF3B10096.283Callithrix_jacchus
ENSOGAG00000004643-8944.690ENSCAFG00000006504UPF3A7048.024Canis_familiaris
ENSOGAG00000004643-9894.336ENSCAFG00000018426UPF3B10093.682Canis_familiaris
ENSOGAG00000004643-10092.340ENSCAFG00020004074UPF3B10091.702Canis_lupus_dingo
ENSOGAG00000004643-8944.690ENSCAFG00020014268UPF3A6848.024Canis_lupus_dingo
ENSOGAG00000004643-9891.525ENSCHIG00000018011-10096.283Capra_hircus
ENSOGAG00000004643-9064.471ENSCHIG00000011454-9961.488Capra_hircus
ENSOGAG00000004643-10091.718ENSCHIG00000000247-10091.718Capra_hircus
ENSOGAG00000004643-10095.106ENSTSYG00000014690UPF3B10094.468Carlito_syrichta
ENSOGAG00000004643-8450.868ENSCCAG00000018406UPF3A5355.725Cebus_capucinus
ENSOGAG00000004643-7173.239ENSCCAG00000021964-10073.239Cebus_capucinus
ENSOGAG00000004643-9958.120ENSCCAG00000029813-9768.519Cebus_capucinus
ENSOGAG00000004643-10094.894ENSCATG00000017506UPF3B10096.654Cercocebus_atys
ENSOGAG00000004643-8949.420ENSCATG00000029733UPF3A5661.905Cercocebus_atys
ENSOGAG00000004643-10092.766ENSCLAG00000003260UPF3B10092.766Chinchilla_lanigera
ENSOGAG00000004643-10092.547ENSCSAG00000018348UPF3B10092.547Chlorocebus_sabaeus
ENSOGAG00000004643-8949.078ENSCSAG00000017388UPF3A5661.232Chlorocebus_sabaeus
ENSOGAG00000004643-9964.854ENSCPBG00000020685UPF3B9964.854Chrysemys_picta_bellii
ENSOGAG00000004643-7196.654ENSCANG00000029220UPF3B10096.654Colobus_angolensis_palliatus
ENSOGAG00000004643-10083.686ENSCGRG00001006858-10083.898Cricetulus_griseus_chok1gshd
ENSOGAG00000004643-7583.191ENSCGRG00001013643-8981.098Cricetulus_griseus_chok1gshd
ENSOGAG00000004643-8985.952ENSCGRG00000007627Upf3b10086.190Cricetulus_griseus_crigri
ENSOGAG00000004643-9356.570ENSCSEG00000002046upf3b6660.180Cynoglossus_semilaevis
ENSOGAG00000004643-9653.291ENSCVAG00000005030upf3b6462.662Cyprinodon_variegatus
ENSOGAG00000004643-9358.278ENSDARG00000000489upf3b9757.082Danio_rerio
ENSOGAG00000004643-7651.771ENSDNOG00000034391UPF3A6358.305Dasypus_novemcinctus
ENSOGAG00000004643-10091.097ENSDNOG00000008665UPF3B10091.097Dasypus_novemcinctus
ENSOGAG00000004643-10089.574ENSDORG00000006077Upf3b10088.936Dipodomys_ordii
ENSOGAG00000004643-8643.427ENSETEG00000010110UPF3A5244.015Echinops_telfairi
ENSOGAG00000004643-9992.111ENSEASG00005012919UPF3B10091.898Equus_asinus_asinus
ENSOGAG00000004643-8851.544ENSEASG00005021884UPF3A5454.851Equus_asinus_asinus
ENSOGAG00000004643-9050.926ENSECAG00000017141UPF3A5454.851Equus_caballus
ENSOGAG00000004643-9992.111ENSECAG00000016947UPF3B10091.898Equus_caballus
ENSOGAG00000004643-10051.383ENSELUG00000020389upf3b6560.843Esox_lucius
ENSOGAG00000004643-8948.643ENSFCAG00000014602UPF3A5555.263Felis_catus
ENSOGAG00000004643-10093.220ENSFCAG00000004388UPF3B10093.432Felis_catus
ENSOGAG00000004643-9964.286ENSFALG00000001569UPF3B9962.500Ficedula_albicollis
ENSOGAG00000004643-10093.830ENSFDAG00000018869UPF3B10093.830Fukomys_damarensis
ENSOGAG00000004643-9353.778ENSFHEG00000017895upf3b6363.036Fundulus_heteroclitus
ENSOGAG00000004643-9355.211ENSGMOG00000001621upf3b6759.215Gadus_morhua
ENSOGAG00000004643-9966.597ENSGALG00000008618UPF3B9968.476Gallus_gallus
ENSOGAG00000004643-9654.405ENSGAFG00000000829upf3b9655.531Gambusia_affinis
ENSOGAG00000004643-9255.928ENSGACG00000017435upf3b7166.986Gasterosteus_aculeatus
ENSOGAG00000004643-9967.573ENSGAGG00000001219UPF3B9967.573Gopherus_agassizii
ENSOGAG00000004643-8742.689ENSGGOG00000041219-8937.619Gorilla_gorilla
ENSOGAG00000004643-8949.884ENSGGOG00000015428UPF3A8947.817Gorilla_gorilla
ENSOGAG00000004643-10095.106ENSGGOG00000023995UPF3B10096.654Gorilla_gorilla
ENSOGAG00000004643-8842.723ENSGGOG00000043074-8437.678Gorilla_gorilla
ENSOGAG00000004643-9656.957ENSHBUG00000017393upf3b6365.798Haplochromis_burtoni
ENSOGAG00000004643-10094.043ENSHGLG00000019582-10094.043Heterocephalus_glaber_female
ENSOGAG00000004643-8585.500ENSHGLG00000011189-9585.750Heterocephalus_glaber_female
ENSOGAG00000004643-10091.064ENSHGLG00100002042-10090.213Heterocephalus_glaber_male
ENSOGAG00000004643-8584.250ENSHGLG00100001889-9585.000Heterocephalus_glaber_male
ENSOGAG00000004643-10054.564ENSHCOG00000017004upf3b9355.111Hippocampus_comes
ENSOGAG00000004643-10056.082ENSIPUG00000019249upf3b10056.701Ictalurus_punctatus
ENSOGAG00000004643-10091.915ENSSTOG00000001101UPF3B10091.915Ictidomys_tridecemlineatus
ENSOGAG00000004643-10088.771ENSJJAG00000000053Upf3b10088.983Jaculus_jaculus
ENSOGAG00000004643-9656.769ENSKMAG00000020300upf3b9653.433Kryptolebias_marmoratus
ENSOGAG00000004643-6064.808ENSLBEG00000028689upf3b5964.808Labrus_bergylta
ENSOGAG00000004643-9056.109ENSLACG00000008691UPF3B10059.138Latimeria_chalumnae
ENSOGAG00000004643-5174.380ENSLOCG00000015238upf3b9954.060Lepisosteus_oculatus
ENSOGAG00000004643-9052.727ENSLOCG00000002665upf3a5962.366Lepisosteus_oculatus
ENSOGAG00000004643-8943.972ENSLAFG00000023358UPF3A9943.468Loxodonta_africana
ENSOGAG00000004643-10092.553ENSLAFG00000001267UPF3B10092.553Loxodonta_africana
ENSOGAG00000004643-10094.681ENSMFAG00000045414UPF3B10096.654Macaca_fascicularis
ENSOGAG00000004643-8150.000ENSMMUG00000007449UPF3A5067.100Macaca_mulatta
ENSOGAG00000004643-10094.681ENSMMUG00000020222UPF3B10096.654Macaca_mulatta
ENSOGAG00000004643-10094.681ENSMNEG00000039794UPF3B10096.654Macaca_nemestrina
ENSOGAG00000004643-8748.821ENSMNEG00000036402UPF3A5064.228Macaca_nemestrina
ENSOGAG00000004643-10094.894ENSMLEG00000010999UPF3B10096.654Mandrillus_leucophaeus
ENSOGAG00000004643-9446.813ENSMLEG00000014726UPF3A6158.845Mandrillus_leucophaeus
ENSOGAG00000004643-9656.739ENSMZEG00005007871upf3b6365.798Maylandia_zebra
ENSOGAG00000004643-8168.557ENSMGAG00000007728UPF3B9969.845Meleagris_gallopavo
ENSOGAG00000004643-8551.196ENSMGAG00000014837UPF3A9651.852Meleagris_gallopavo
ENSOGAG00000004643-10083.263ENSMAUG00000008705Upf3b10083.475Mesocricetus_auratus
ENSOGAG00000004643-6996.296ENSMICG00000001743UPF3B10096.296Microcebus_murinus
ENSOGAG00000004643-10083.711ENSMOCG00000017893Upf3b10082.816Microtus_ochrogaster
ENSOGAG00000004643-9654.329ENSMMOG00000004183upf3b9655.098Mola_mola
ENSOGAG00000004643-8852.914ENSMODG00000003159UPF3A9652.914Monodelphis_domestica
ENSOGAG00000004643-8975.059ENSMODG00000010232UPF3B9974.118Monodelphis_domestica
ENSOGAG00000004643-5967.021ENSMALG00000008042upf3b6762.121Monopterus_albus
ENSOGAG00000004643-10084.322MGP_CAROLIEiJ_G0032999Upf3b10084.534Mus_caroli
ENSOGAG00000004643-10084.958ENSMUSG00000036572Upf3b10085.169Mus_musculus
ENSOGAG00000004643-10083.475MGP_PahariEiJ_G0031543Upf3b10083.686Mus_pahari
ENSOGAG00000004643-10084.958MGP_SPRETEiJ_G0034152Upf3b10085.169Mus_spretus
ENSOGAG00000004643-9894.118ENSMPUG00000001531UPF3B10093.464Mustela_putorius_furo
ENSOGAG00000004643-9045.602ENSMPUG00000009139UPF3A5451.812Mustela_putorius_furo
ENSOGAG00000004643-10093.617ENSMLUG00000010821UPF3B10093.617Myotis_lucifugus
ENSOGAG00000004643-8347.407ENSMLUG00000015905UPF3A5556.540Myotis_lucifugus
ENSOGAG00000004643-10083.686ENSNGAG00000008231Upf3b10084.958Nannospalax_galili
ENSOGAG00000004643-8450.856ENSNLEG00000007563UPF3A5758.763Nomascus_leucogenys
ENSOGAG00000004643-9794.748ENSNLEG00000014897UPF3B10094.681Nomascus_leucogenys
ENSOGAG00000004643-6583.226ENSMEUG00000015615UPF3B8183.333Notamacropus_eugenii
ENSOGAG00000004643-10088.085ENSODEG00000002186-10087.872Octodon_degus
ENSOGAG00000004643-10056.846ENSONIG00000002536upf3b10054.451Oreochromis_niloticus
ENSOGAG00000004643-7946.073ENSOANG00000006985-6753.455Ornithorhynchus_anatinus
ENSOGAG00000004643-10091.511ENSOCUG00000010213UPF3B10091.511Oryctolagus_cuniculus
ENSOGAG00000004643-9357.616ENSORLG00000001026upf3b9457.111Oryzias_latipes
ENSOGAG00000004643-9357.363ENSORLG00020003758upf3b9456.858Oryzias_latipes_hni
ENSOGAG00000004643-9457.269ENSORLG00015012954upf3b9456.319Oryzias_latipes_hsok
ENSOGAG00000004643-8758.432ENSOMEG00000014736upf3b6361.921Oryzias_melastigma
ENSOGAG00000004643-10091.152ENSOARG00000016051-10091.152Ovis_aries
ENSOGAG00000004643-8848.416ENSOARG00000009004UPF3A5064.490Ovis_aries
ENSOGAG00000004643-9069.740ENSOARG00000007869-9967.849Ovis_aries
ENSOGAG00000004643-8949.652ENSPPAG00000042267UPF3A5262.977Pan_paniscus
ENSOGAG00000004643-10095.106ENSPPAG00000040390UPF3B10096.654Pan_paniscus
ENSOGAG00000004643-10094.255ENSPPRG00000023536UPF3B10094.255Panthera_pardus
ENSOGAG00000004643-9048.222ENSPPRG00000025062UPF3A5555.263Panthera_pardus
ENSOGAG00000004643-10089.669ENSPTIG00000015264UPF3B10096.283Panthera_tigris_altaica
ENSOGAG00000004643-8949.652ENSPTRG00000006073UPF3A5262.977Pan_troglodytes
ENSOGAG00000004643-8739.762ENSPTRG00000041835-8838.095Pan_troglodytes
ENSOGAG00000004643-9736.774ENSPTRG00000041187-8938.810Pan_troglodytes
ENSOGAG00000004643-10095.106ENSPTRG00000022228UPF3B10096.654Pan_troglodytes
ENSOGAG00000004643-10094.894ENSPANG00000000900UPF3B10096.654Papio_anubis
ENSOGAG00000004643-8949.184ENSPANG00000004346UPF3A5661.172Papio_anubis
ENSOGAG00000004643-10055.072ENSPKIG00000019226upf3b9363.924Paramormyrops_kingsleyae
ENSOGAG00000004643-5672.761ENSPSIG00000005833UPF3B8574.689Pelodiscus_sinensis
ENSOGAG00000004643-8553.318ENSPSIG00000007468UPF3A6364.528Pelodiscus_sinensis
ENSOGAG00000004643-5965.714ENSPMGG00000016067upf3b9565.468Periophthalmus_magnuspinnatus
ENSOGAG00000004643-10086.681ENSPEMG00000012352Upf3b10086.892Peromyscus_maniculatus_bairdii
ENSOGAG00000004643-9171.526ENSPCIG00000028914UPF3B9666.667Phascolarctos_cinereus
ENSOGAG00000004643-8551.027ENSPCIG00000019590-7364.407Phascolarctos_cinereus
ENSOGAG00000004643-9655.947ENSPLAG00000005105upf3b9656.616Poecilia_latipinna
ENSOGAG00000004643-9655.947ENSPLAG00000019922upf3b9656.616Poecilia_latipinna
ENSOGAG00000004643-8450.369ENSPLAG00000011960upf3a8351.225Poecilia_latipinna
ENSOGAG00000004643-9656.167ENSPMEG00000023532upf3b9657.363Poecilia_mexicana
ENSOGAG00000004643-6896.296ENSPPYG00000020675-9696.296Pongo_abelii
ENSOGAG00000004643-8450.856ENSPPYG00000005536UPF3A8647.477Pongo_abelii
ENSOGAG00000004643-10088.820ENSPCAG00000009464UPF3B10088.820Procavia_capensis
ENSOGAG00000004643-5949.822ENSPCAG00000013124UPF3A5450.923Procavia_capensis
ENSOGAG00000004643-10095.541ENSPCOG00000021960UPF3B10097.037Propithecus_coquereli
ENSOGAG00000004643-8646.462ENSPVAG00000005656UPF3A6346.129Pteropus_vampyrus
ENSOGAG00000004643-10078.054ENSPVAG00000014075UPF3B10078.054Pteropus_vampyrus
ENSOGAG00000004643-9657.424ENSPNYG00000009846upf3b6465.798Pundamilia_nyererei
ENSOGAG00000004643-10056.557ENSPNAG00000021528upf3b10056.762Pygocentrus_nattereri
ENSOGAG00000004643-10085.169ENSRNOG00000039994Upf3b10085.381Rattus_norvegicus
ENSOGAG00000004643-8748.700ENSRBIG00000034007UPF3A5762.738Rhinopithecus_bieti
ENSOGAG00000004643-8292.708ENSRBIG00000037219UPF3B10092.708Rhinopithecus_bieti
ENSOGAG00000004643-10095.106ENSRROG00000041031UPF3B10096.654Rhinopithecus_roxellana
ENSOGAG00000004643-10094.255ENSSBOG00000019740UPF3B10095.911Saimiri_boliviensis_boliviensis
ENSOGAG00000004643-7548.229ENSSBOG00000029989UPF3A8039.945Saimiri_boliviensis_boliviensis
ENSOGAG00000004643-8752.103ENSSHAG00000009895UPF3A9852.103Sarcophilus_harrisii
ENSOGAG00000004643-8774.641ENSSHAG00000008634UPF3B9968.856Sarcophilus_harrisii
ENSOGAG00000004643-10056.184ENSSFOG00015005614upf3b10058.700Scleropages_formosus
ENSOGAG00000004643-9355.408ENSSMAG00000012913upf3b8467.279Scophthalmus_maximus
ENSOGAG00000004643-8445.297ENSSDUG00000009680upf3a5775.269Seriola_dumerili
ENSOGAG00000004643-9650.433ENSSDUG00000005682upf3b9751.620Seriola_dumerili
ENSOGAG00000004643-9654.113ENSSLDG00000003130upf3b9751.836Seriola_lalandi_dorsalis
ENSOGAG00000004643-8980.645ENSSARG00000004147UPF3B10082.488Sorex_araneus
ENSOGAG00000004643-8139.386ENSSARG00000007262UPF3A9236.504Sorex_araneus
ENSOGAG00000004643-9965.839ENSSPUG00000013082UPF3B9963.768Sphenodon_punctatus
ENSOGAG00000004643-9656.182ENSSPAG00000009989upf3b6465.372Stegastes_partitus
ENSOGAG00000004643-10093.830ENSSSCG00000012617UPF3B10093.830Sus_scrofa
ENSOGAG00000004643-9146.070ENSSSCG00000024679UPF3A7150.164Sus_scrofa
ENSOGAG00000004643-8355.556ENSTGUG00000009493UPF3A9955.556Taeniopygia_guttata
ENSOGAG00000004643-8969.789ENSTGUG00000003413UPF3B9970.023Taeniopygia_guttata
ENSOGAG00000004643-8757.831ENSTRUG00000010645upf3b9851.717Takifugu_rubripes
ENSOGAG00000004643-10076.190ENSTBEG00000003229UPF3B10075.776Tupaia_belangeri
ENSOGAG00000004643-6637.778ENSTBEG00000017186-6043.878Tupaia_belangeri
ENSOGAG00000004643-10091.102ENSUAMG00000024565UPF3B10091.737Ursus_americanus
ENSOGAG00000004643-9386.422ENSUMAG00000002150UPF3B9982.721Ursus_maritimus
ENSOGAG00000004643-8746.283ENSVPAG00000003525UPF3A5758.190Vicugna_pacos
ENSOGAG00000004643-8491.951ENSVPAG00000009971UPF3B10091.951Vicugna_pacos
ENSOGAG00000004643-8445.658ENSVVUG00000013538UPF3A5848.675Vulpes_vulpes
ENSOGAG00000004643-10092.553ENSVVUG00000011594UPF3B9796.635Vulpes_vulpes
ENSOGAG00000004643-8346.766ENSXETG00000002572upf3a9046.898Xenopus_tropicalis
ENSOGAG00000004643-8757.857ENSXETG00000007440upf3b10054.390Xenopus_tropicalis
ENSOGAG00000004643-9353.620ENSXCOG00000016586upf3b9765.403Xiphophorus_couchianus
ENSOGAG00000004643-9456.404ENSXMAG00000013680upf3b9456.319Xiphophorus_maculatus

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