EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOGAG00000004788 (Gene tree)
Gene ID: 100946254
Gene Symbol: UPF3A
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Otolemur_garnettii
Status: putative
Strand: Minus strand
Length: 21536 bases
Position: chrGL873680.1:51064-72599
Accession: 20332
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOGAP00000004283	Smg4_UPF3	PF03467.15	1.8e-52	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOGAT00000004791	UPF3A-201	1239	-	ENSOGAP00000004283	413 (aa)	-	H0WQP1

Gene Model

Click here to download ENSOGAG00000004788's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOGAG00000004788's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOGAG00000004788	UPF3A	99	75.540	ENSG00000169062	UPF3A	99	71.154	Homo_sapiens
ENSOGAG00000004788	UPF3A	84	61.891	ENSAPOG00000013484	upf3a	73	61.891	Acanthochromis_polyacanthus
ENSOGAG00000004788	UPF3A	92	76.546	ENSAMEG00000004259	UPF3A	85	76.546	Ailuropoda_melanoleuca
ENSOGAG00000004788	UPF3A	83	61.919	ENSACIG00000020468	upf3a	70	80.000	Amphilophus_citrinellus
ENSOGAG00000004788	UPF3A	84	61.891	ENSAOCG00000020784	upf3a	73	61.891	Amphiprion_ocellaris
ENSOGAG00000004788	UPF3A	61	56.274	ENSAOCG00000000706	upf3b	78	50.964	Amphiprion_ocellaris
ENSOGAG00000004788	UPF3A	84	61.891	ENSAPEG00000003519	upf3a	73	61.891	Amphiprion_percula
ENSOGAG00000004788	UPF3A	84	62.178	ENSATEG00000005843	upf3a	75	61.281	Anabas_testudineus
ENSOGAG00000004788	UPF3A	81	73.874	ENSACAG00000001540	UPF3A	80	73.874	Anolis_carolinensis
ENSOGAG00000004788	UPF3A	96	74.811	ENSANAG00000021713	UPF3A	82	75.385	Aotus_nancymaae
ENSOGAG00000004788	UPF3A	73	50.165	ENSANAG00000025598	-	58	56.545	Aotus_nancymaae
ENSOGAG00000004788	UPF3A	84	61.605	ENSACLG00000026274	upf3a	70	61.429	Astatotilapia_calliptera
ENSOGAG00000004788	UPF3A	83	63.006	ENSAMXG00000002608	upf3a	73	63.006	Astyanax_mexicanus
ENSOGAG00000004788	UPF3A	51	79.904	ENSBTAG00000047365	-	95	79.904	Bos_taurus
ENSOGAG00000004788	UPF3A	90	78.167	ENSCJAG00000019102	UPF3A	83	76.786	Callithrix_jacchus
ENSOGAG00000004788	UPF3A	96	75.940	ENSCAFG00000006504	UPF3A	85	75.940	Canis_familiaris
ENSOGAG00000004788	UPF3A	96	76.190	ENSCAFG00020014268	UPF3A	83	76.190	Canis_lupus_dingo
ENSOGAG00000004788	UPF3A	66	53.650	ENSCAFG00020004074	UPF3B	67	43.218	Canis_lupus_dingo
ENSOGAG00000004788	UPF3A	99	70.673	ENSCHIG00000008682	UPF3A	83	70.673	Capra_hircus
ENSOGAG00000004788	UPF3A	68	69.792	ENSTSYG00000001918	UPF3A	74	69.792	Carlito_syrichta
ENSOGAG00000004788	UPF3A	100	66.747	ENSCPOG00000006824	UPF3A	95	66.747	Cavia_porcellus
ENSOGAG00000004788	UPF3A	99	75.061	ENSCCAG00000018406	UPF3A	87	75.061	Cebus_capucinus
ENSOGAG00000004788	UPF3A	99	74.580	ENSCATG00000029733	UPF3A	83	77.078	Cercocebus_atys
ENSOGAG00000004788	UPF3A	99	73.333	ENSCSAG00000017388	UPF3A	87	73.333	Chlorocebus_sabaeus
ENSOGAG00000004788	UPF3A	94	72.123	ENSCGRG00001017387	Upf3a	89	72.123	Cricetulus_griseus_chok1gshd
ENSOGAG00000004788	UPF3A	94	71.611	ENSCGRG00000001468	Upf3a	89	71.611	Cricetulus_griseus_crigri
ENSOGAG00000004788	UPF3A	64	54.244	ENSCGRG00000007627	Upf3b	68	57.732	Cricetulus_griseus_crigri
ENSOGAG00000004788	UPF3A	55	63.713	ENSCSEG00000002046	upf3b	71	47.953	Cynoglossus_semilaevis
ENSOGAG00000004788	UPF3A	84	62.178	ENSCSEG00000005106	upf3a	73	62.178	Cynoglossus_semilaevis
ENSOGAG00000004788	UPF3A	87	59.615	ENSCVAG00000022333	upf3a	74	59.615	Cyprinodon_variegatus
ENSOGAG00000004788	UPF3A	88	77.174	ENSDNOG00000034391	UPF3A	93	72.683	Dasypus_novemcinctus
ENSOGAG00000004788	UPF3A	92	64.323	ENSETEG00000010110	UPF3A	83	63.750	Echinops_telfairi
ENSOGAG00000004788	UPF3A	99	71.463	ENSEASG00005021884	UPF3A	81	73.552	Equus_asinus_asinus
ENSOGAG00000004788	UPF3A	70	54.483	ENSEASG00005012919	UPF3B	68	51.097	Equus_asinus_asinus
ENSOGAG00000004788	UPF3A	70	54.483	ENSECAG00000016947	UPF3B	68	51.097	Equus_caballus
ENSOGAG00000004788	UPF3A	95	72.070	ENSECAG00000017141	UPF3A	86	70.952	Equus_caballus
ENSOGAG00000004788	UPF3A	82	62.537	ENSELUG00000011050	upf3a	71	62.353	Esox_lucius
ENSOGAG00000004788	UPF3A	91	77.778	ENSFCAG00000014602	UPF3A	83	76.826	Felis_catus
ENSOGAG00000004788	UPF3A	58	61.446	ENSGMOG00000001621	upf3b	52	61.446	Gadus_morhua
ENSOGAG00000004788	UPF3A	79	61.012	ENSGMOG00000019615	upf3a	99	61.012	Gadus_morhua
ENSOGAG00000004788	UPF3A	88	60.548	ENSGAFG00000021170	upf3a	74	60.274	Gambusia_affinis
ENSOGAG00000004788	UPF3A	79	60.182	ENSGACG00000001972	upf3a	99	60.479	Gasterosteus_aculeatus
ENSOGAG00000004788	UPF3A	57	55.785	ENSGACG00000017435	upf3b	65	62.712	Gasterosteus_aculeatus
ENSOGAG00000004788	UPF3A	98	55.797	ENSGGOG00000043074	-	67	68.485	Gorilla_gorilla
ENSOGAG00000004788	UPF3A	99	74.820	ENSGGOG00000015428	UPF3A	87	74.820	Gorilla_gorilla
ENSOGAG00000004788	UPF3A	89	60.598	ENSGGOG00000041219	-	76	65.903	Gorilla_gorilla
ENSOGAG00000004788	UPF3A	84	61.605	ENSHBUG00000011325	upf3a	73	61.429	Haplochromis_burtoni
ENSOGAG00000004788	UPF3A	100	67.150	ENSHGLG00000001544	UPF3A	95	67.150	Heterocephalus_glaber_female
ENSOGAG00000004788	UPF3A	100	67.150	ENSHGLG00100013244	UPF3A	95	67.150	Heterocephalus_glaber_male
ENSOGAG00000004788	UPF3A	73	55.987	ENSHCOG00000017004	upf3b	74	46.377	Hippocampus_comes
ENSOGAG00000004788	UPF3A	57	64.490	ENSIPUG00000019249	upf3b	83	45.263	Ictalurus_punctatus
ENSOGAG00000004788	UPF3A	83	62.751	ENSIPUG00000023450	upf3a	73	62.571	Ictalurus_punctatus
ENSOGAG00000004788	UPF3A	55	74.890	ENSSTOG00000030282	-	95	74.890	Ictidomys_tridecemlineatus
ENSOGAG00000004788	UPF3A	51	76.190	ENSJJAG00000018099	-	98	76.555	Jaculus_jaculus
ENSOGAG00000004788	UPF3A	88	59.673	ENSKMAG00000004381	upf3a	74	61.264	Kryptolebias_marmoratus
ENSOGAG00000004788	UPF3A	50	69.756	ENSLBEG00000021570	upf3a	77	51.979	Labrus_bergylta
ENSOGAG00000004788	UPF3A	58	60.400	ENSLBEG00000028689	upf3b	54	56.098	Labrus_bergylta
ENSOGAG00000004788	UPF3A	54	45.833	ENSLACG00000006645	UPF3A	72	40.364	Latimeria_chalumnae
ENSOGAG00000004788	UPF3A	57	62.857	ENSLOCG00000015238	upf3b	80	48.209	Lepisosteus_oculatus
ENSOGAG00000004788	UPF3A	88	63.536	ENSLOCG00000002665	upf3a	76	63.536	Lepisosteus_oculatus
ENSOGAG00000004788	UPF3A	80	64.080	ENSLAFG00000023358	UPF3A	83	63.506	Loxodonta_africana
ENSOGAG00000004788	UPF3A	99	70.096	ENSMFAG00000045016	UPF3A	87	70.096	Macaca_fascicularis
ENSOGAG00000004788	UPF3A	99	70.504	ENSMMUG00000007449	UPF3A	82	72.796	Macaca_mulatta
ENSOGAG00000004788	UPF3A	90	72.237	ENSMNEG00000036402	UPF3A	75	75.339	Macaca_nemestrina
ENSOGAG00000004788	UPF3A	83	76.218	ENSMLEG00000014726	UPF3A	75	79.331	Mandrillus_leucophaeus
ENSOGAG00000004788	UPF3A	92	60.313	ENSMAMG00000018364	upf3a	75	60.313	Mastacembelus_armatus
ENSOGAG00000004788	UPF3A	84	61.605	ENSMZEG00005021571	upf3a	70	61.429	Maylandia_zebra
ENSOGAG00000004788	UPF3A	75	73.633	ENSMGAG00000014837	UPF3A	78	73.633	Meleagris_gallopavo
ENSOGAG00000004788	UPF3A	81	75.224	ENSMOCG00000000550	Upf3a	91	75.224	Microtus_ochrogaster
ENSOGAG00000004788	UPF3A	80	77.644	ENSMODG00000003159	UPF3A	78	77.644	Monodelphis_domestica
ENSOGAG00000004788	UPF3A	72	58.013	ENSMODG00000010232	UPF3B	71	52.117	Monodelphis_domestica
ENSOGAG00000004788	UPF3A	96	69.620	MGP_CAROLIEiJ_G0030848	Upf3a	91	69.620	Mus_caroli
ENSOGAG00000004788	UPF3A	96	69.697	ENSMUSG00000038398	Upf3a	91	69.773	Mus_musculus
ENSOGAG00000004788	UPF3A	96	69.018	MGP_PahariEiJ_G0021311	Upf3a	91	69.018	Mus_pahari
ENSOGAG00000004788	UPF3A	96	69.444	MGP_SPRETEiJ_G0031958	Upf3a	91	69.444	Mus_spretus
ENSOGAG00000004788	UPF3A	70	51.864	ENSMPUG00000001531	UPF3B	70	56.269	Mustela_putorius_furo
ENSOGAG00000004788	UPF3A	95	76.768	ENSMPUG00000009139	UPF3A	81	76.768	Mustela_putorius_furo
ENSOGAG00000004788	UPF3A	83	74.221	ENSMLUG00000015905	UPF3A	84	74.221	Myotis_lucifugus
ENSOGAG00000004788	UPF3A	96	70.960	ENSNGAG00000019314	Upf3a	91	70.960	Nannospalax_galili
ENSOGAG00000004788	UPF3A	84	61.318	ENSNBRG00000000828	upf3a	73	61.143	Neolamprologus_brichardi
ENSOGAG00000004788	UPF3A	99	74.641	ENSNLEG00000007563	UPF3A	83	77.136	Nomascus_leucogenys
ENSOGAG00000004788	UPF3A	60	68.016	ENSOPRG00000008846	-	56	71.255	Ochotona_princeps
ENSOGAG00000004788	UPF3A	53	74.654	ENSODEG00000009176	-	83	76.667	Octodon_degus
ENSOGAG00000004788	UPF3A	79	65.854	ENSOANG00000006985	-	85	65.854	Ornithorhynchus_anatinus
ENSOGAG00000004788	UPF3A	75	69.906	ENSOCUG00000008450	UPF3A	70	68.824	Oryctolagus_cuniculus
ENSOGAG00000004788	UPF3A	57	52.479	ENSORLG00000001026	upf3b	54	54.878	Oryzias_latipes
ENSOGAG00000004788	UPF3A	83	62.899	ENSORLG00000010911	upf3a	71	62.899	Oryzias_latipes
ENSOGAG00000004788	UPF3A	83	61.739	ENSORLG00020014317	upf3a	72	61.739	Oryzias_latipes_hni
ENSOGAG00000004788	UPF3A	57	52.893	ENSORLG00020003758	upf3b	51	66.216	Oryzias_latipes_hni
ENSOGAG00000004788	UPF3A	57	52.893	ENSORLG00015012954	upf3b	54	55.285	Oryzias_latipes_hsok
ENSOGAG00000004788	UPF3A	57	56.846	ENSOMEG00000014736	upf3b	74	47.368	Oryzias_melastigma
ENSOGAG00000004788	UPF3A	92	59.055	ENSOMEG00000014425	upf3a	79	58.140	Oryzias_melastigma
ENSOGAG00000004788	UPF3A	93	72.123	ENSOARG00000009004	UPF3A	83	72.123	Ovis_aries
ENSOGAG00000004788	UPF3A	71	48.658	ENSOARG00000007869	-	72	45.973	Ovis_aries
ENSOGAG00000004788	UPF3A	99	74.519	ENSPPAG00000042267	UPF3A	83	77.020	Pan_paniscus
ENSOGAG00000004788	UPF3A	95	74.074	ENSPPRG00000025062	UPF3A	89	73.349	Panthera_pardus
ENSOGAG00000004788	UPF3A	83	62.899	ENSPTRG00000041835	-	75	63.037	Pan_troglodytes
ENSOGAG00000004788	UPF3A	99	74.820	ENSPTRG00000006073	UPF3A	83	77.330	Pan_troglodytes
ENSOGAG00000004788	UPF3A	89	61.141	ENSPTRG00000051640	-	82	61.141	Pan_troglodytes
ENSOGAG00000004788	UPF3A	83	64.756	ENSPTRG00000041187	-	77	60.745	Pan_troglodytes
ENSOGAG00000004788	UPF3A	99	73.621	ENSPANG00000004346	UPF3A	83	76.071	Papio_anubis
ENSOGAG00000004788	UPF3A	70	57.655	ENSPKIG00000019226	upf3b	75	71.795	Paramormyrops_kingsleyae
ENSOGAG00000004788	UPF3A	79	73.556	ENSPSIG00000007468	UPF3A	80	73.556	Pelodiscus_sinensis
ENSOGAG00000004788	UPF3A	96	71.970	ENSPEMG00000019968	-	91	71.970	Peromyscus_maniculatus_bairdii
ENSOGAG00000004788	UPF3A	74	74.400	ENSPCIG00000019590	-	83	81.579	Phascolarctos_cinereus
ENSOGAG00000004788	UPF3A	88	61.538	ENSPFOG00000013222	upf3a	74	61.538	Poecilia_formosa
ENSOGAG00000004788	UPF3A	88	60.000	ENSPLAG00000011960	upf3a	75	60.000	Poecilia_latipinna
ENSOGAG00000004788	UPF3A	88	60.822	ENSPMEG00000000836	upf3a	71	60.822	Poecilia_mexicana
ENSOGAG00000004788	UPF3A	99	74.580	ENSPPYG00000005536	UPF3A	83	77.078	Pongo_abelii
ENSOGAG00000004788	UPF3A	81	67.257	ENSPCAG00000013124	UPF3A	70	67.552	Procavia_capensis
ENSOGAG00000004788	UPF3A	96	71.679	ENSPVAG00000005656	UPF3A	83	71.679	Pteropus_vampyrus
ENSOGAG00000004788	UPF3A	84	61.605	ENSPNYG00000011289	upf3a	70	61.429	Pundamilia_nyererei
ENSOGAG00000004788	UPF3A	83	62.644	ENSPNAG00000019532	upf3a	73	62.899	Pygocentrus_nattereri
ENSOGAG00000004788	UPF3A	58	63.052	ENSPNAG00000021528	upf3b	56	65.476	Pygocentrus_nattereri
ENSOGAG00000004788	UPF3A	99	68.932	ENSRNOG00000017397	Upf3a	97	69.533	Rattus_norvegicus
ENSOGAG00000004788	UPF3A	86	76.111	ENSRBIG00000034007	UPF3A	82	75.472	Rhinopithecus_bieti
ENSOGAG00000004788	UPF3A	83	77.011	ENSRROG00000012212	UPF3A	72	77.011	Rhinopithecus_roxellana
ENSOGAG00000004788	UPF3A	96	68.514	ENSSBOG00000029989	UPF3A	82	68.514	Saimiri_boliviensis_boliviensis
ENSOGAG00000004788	UPF3A	82	76.696	ENSSHAG00000009895	UPF3A	81	76.696	Sarcophilus_harrisii
ENSOGAG00000004788	UPF3A	59	60.400	ENSSFOG00015005614	upf3b	67	52.174	Scleropages_formosus
ENSOGAG00000004788	UPF3A	83	60.465	ENSSFOG00015021851	upf3a	72	60.174	Scleropages_formosus
ENSOGAG00000004788	UPF3A	61	62.151	ENSSMAG00000012913	upf3b	54	68.293	Scophthalmus_maximus
ENSOGAG00000004788	UPF3A	83	62.139	ENSSDUG00000009680	upf3a	60	77.320	Seriola_dumerili
ENSOGAG00000004788	UPF3A	83	62.139	ENSSLDG00000009700	upf3a	72	62.139	Seriola_lalandi_dorsalis
ENSOGAG00000004788	UPF3A	79	63.415	ENSSARG00000007262	UPF3A	80	60.671	Sorex_araneus
ENSOGAG00000004788	UPF3A	60	62.257	ENSSPAG00000009989	upf3b	78	49.451	Stegastes_partitus
ENSOGAG00000004788	UPF3A	96	73.804	ENSSSCG00000024679	UPF3A	81	76.506	Sus_scrofa
ENSOGAG00000004788	UPF3A	82	74.194	ENSTGUG00000009493	UPF3A	87	74.194	Taeniopygia_guttata
ENSOGAG00000004788	UPF3A	83	59.827	ENSTRUG00000012730	upf3a	73	59.827	Takifugu_rubripes
ENSOGAG00000004788	UPF3A	84	52.571	ENSTNIG00000014973	upf3a	87	52.286	Tetraodon_nigroviridis
ENSOGAG00000004788	UPF3A	70	62.671	ENSTBEG00000017186	-	91	62.887	Tupaia_belangeri
ENSOGAG00000004788	UPF3A	96	64.987	ENSTTRG00000015414	UPF3A	83	64.987	Tursiops_truncatus
ENSOGAG00000004788	UPF3A	82	76.968	ENSVPAG00000003525	UPF3A	86	76.968	Vicugna_pacos
ENSOGAG00000004788	UPF3A	96	73.300	ENSVVUG00000013538	UPF3A	80	73.300	Vulpes_vulpes
ENSOGAG00000004788	UPF3A	74	49.371	ENSXETG00000007440	upf3b	71	71.951	Xenopus_tropicalis
ENSOGAG00000004788	UPF3A	82	56.509	ENSXETG00000002572	upf3a	78	57.396	Xenopus_tropicalis
ENSOGAG00000004788	UPF3A	57	52.263	ENSXMAG00000013680	upf3b	57	50.385	Xiphophorus_maculatus
ENSOGAG00000004788	UPF3A	88	60.822	ENSXMAG00000013452	upf3a	74	60.548	Xiphophorus_maculatus