EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOGAG00000012643 (Gene tree)
Gene ID: 100957153
Gene Symbol: PSPC1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Otolemur_garnettii
Status: putative
Strand: Plus strand
Length: 78150 bases
Position: chrGL873625.1:2082031-2160180
Accession: 100957153
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOGAP00000011326	RRM_1	PF00076.22	1.9e-32	1	2
ENSOGAP00000011326	RRM_1	PF00076.22	1.9e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOGAT00000012645	PSPC1-201	1682	-	ENSOGAP00000011326	523 (aa)	XP_003796741	H0X7E2

Gene Model

Click here to download ENSOGAG00000012643's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOGAG00000012643's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOGAG00000012643	PSPC1	91	59.244	ENSOGAG00000004834	NONO	80	67.109
ENSOGAG00000012643	PSPC1	90	59.579	ENSOGAG00000027710	SFPQ	70	67.200

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOGAG00000012643	PSPC1	100	99.044	ENSG00000121390	PSPC1	100	99.044	Homo_sapiens
ENSOGAG00000012643	PSPC1	88	70.860	ENSAPOG00000015946	pspc1	79	73.953	Acanthochromis_polyacanthus
ENSOGAG00000012643	PSPC1	100	98.470	ENSAMEG00000017420	PSPC1	100	98.470	Ailuropoda_melanoleuca
ENSOGAG00000012643	PSPC1	99	57.778	ENSACIG00000018695	pspc1	87	59.660	Amphilophus_citrinellus
ENSOGAG00000012643	PSPC1	88	69.937	ENSAOCG00000005279	pspc1	78	73.488	Amphiprion_ocellaris
ENSOGAG00000012643	PSPC1	88	71.064	ENSAPEG00000015927	pspc1	79	73.488	Amphiprion_percula
ENSOGAG00000012643	PSPC1	97	55.725	ENSATEG00000004878	pspc1	76	62.410	Anabas_testudineus
ENSOGAG00000012643	PSPC1	77	94.059	ENSAPLG00000006246	PSPC1	100	94.059	Anas_platyrhynchos
ENSOGAG00000012643	PSPC1	88	60.944	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSOGAG00000012643	PSPC1	90	52.500	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSOGAG00000012643	PSPC1	99	83.302	ENSACAG00000002093	PSPC1	99	84.762	Anolis_carolinensis
ENSOGAG00000012643	PSPC1	100	98.853	ENSANAG00000000059	PSPC1	100	98.853	Aotus_nancymaae
ENSOGAG00000012643	PSPC1	99	56.881	ENSACLG00000027220	pspc1	87	59.101	Astatotilapia_calliptera
ENSOGAG00000012643	PSPC1	99	63.388	ENSAMXG00000036881	pspc1	83	71.715	Astyanax_mexicanus
ENSOGAG00000012643	PSPC1	100	95.985	ENSBTAG00000003934	PSPC1	100	95.985	Bos_taurus
ENSOGAG00000012643	PSPC1	100	98.853	ENSCJAG00000004554	PSPC1	100	98.853	Callithrix_jacchus
ENSOGAG00000012643	PSPC1	100	98.662	ENSCAFG00020002009	PSPC1	100	98.662	Canis_lupus_dingo
ENSOGAG00000012643	PSPC1	100	95.985	ENSCHIG00000016708	PSPC1	100	95.985	Capra_hircus
ENSOGAG00000012643	PSPC1	80	88.626	ENSTSYG00000032882	PSPC1	93	85.986	Carlito_syrichta
ENSOGAG00000012643	PSPC1	100	97.132	ENSCPOG00000000395	PSPC1	100	97.132	Cavia_porcellus
ENSOGAG00000012643	PSPC1	100	98.853	ENSCCAG00000033498	PSPC1	100	98.853	Cebus_capucinus
ENSOGAG00000012643	PSPC1	100	98.662	ENSCATG00000036434	PSPC1	100	98.662	Cercocebus_atys
ENSOGAG00000012643	PSPC1	88	88.337	ENSCLAG00000005241	PSPC1	99	88.337	Chinchilla_lanigera
ENSOGAG00000012643	PSPC1	100	91.969	ENSCHOG00000008913	PSPC1	100	91.778	Choloepus_hoffmanni
ENSOGAG00000012643	PSPC1	99	87.452	ENSCPBG00000020859	PSPC1	99	88.077	Chrysemys_picta_bellii
ENSOGAG00000012643	PSPC1	59	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSOGAG00000012643	PSPC1	77	85.926	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSOGAG00000012643	PSPC1	100	97.514	ENSCGRG00001018368	Pspc1	100	97.514	Cricetulus_griseus_chok1gshd
ENSOGAG00000012643	PSPC1	100	97.514	ENSCGRG00000011724	Pspc1	100	97.514	Cricetulus_griseus_crigri
ENSOGAG00000012643	PSPC1	87	66.523	ENSCVAG00000007679	-	83	66.518	Cyprinodon_variegatus
ENSOGAG00000012643	PSPC1	99	66.417	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSOGAG00000012643	PSPC1	100	97.514	ENSDNOG00000011078	PSPC1	100	97.514	Dasypus_novemcinctus
ENSOGAG00000012643	PSPC1	100	94.646	ENSDORG00000016050	Pspc1	100	94.646	Dipodomys_ordii
ENSOGAG00000012643	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSOGAG00000012643	PSPC1	88	59.298	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSOGAG00000012643	PSPC1	59	45.833	ENSEBUG00000010133	pspc1	78	49.158	Eptatretus_burgeri
ENSOGAG00000012643	PSPC1	100	97.706	ENSEASG00005000119	PSPC1	100	97.706	Equus_asinus_asinus
ENSOGAG00000012643	PSPC1	100	97.706	ENSECAG00000017286	PSPC1	100	97.706	Equus_caballus
ENSOGAG00000012643	PSPC1	73	95.082	ENSEEUG00000011288	-	100	65.201	Erinaceus_europaeus
ENSOGAG00000012643	PSPC1	99	65.746	ENSELUG00000003746	pspc1	78	81.651	Esox_lucius
ENSOGAG00000012643	PSPC1	100	98.662	ENSFCAG00000027841	PSPC1	100	98.662	Felis_catus
ENSOGAG00000012643	PSPC1	89	94.861	ENSFALG00000008750	PSPC1	99	87.786	Ficedula_albicollis
ENSOGAG00000012643	PSPC1	100	94.837	ENSFDAG00000002617	PSPC1	100	94.837	Fukomys_damarensis
ENSOGAG00000012643	PSPC1	88	66.953	ENSGMOG00000015074	pspc1	86	66.091	Gadus_morhua
ENSOGAG00000012643	PSPC1	99	87.500	ENSGALG00000017142	PSPC1	99	86.355	Gallus_gallus
ENSOGAG00000012643	PSPC1	62	78.154	ENSGAFG00000006327	pspc1	67	78.154	Gambusia_affinis
ENSOGAG00000012643	PSPC1	88	65.948	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSOGAG00000012643	PSPC1	99	87.452	ENSGAGG00000019164	PSPC1	99	88.077	Gopherus_agassizii
ENSOGAG00000012643	PSPC1	92	59.420	ENSGAGG00000017325	-	58	66.841	Gopherus_agassizii
ENSOGAG00000012643	PSPC1	100	98.853	ENSGGOG00000003414	PSPC1	100	98.853	Gorilla_gorilla
ENSOGAG00000012643	PSPC1	99	65.047	ENSHBUG00000001139	pspc1	87	69.957	Haplochromis_burtoni
ENSOGAG00000012643	PSPC1	100	97.132	ENSHGLG00000018811	PSPC1	100	97.132	Heterocephalus_glaber_female
ENSOGAG00000012643	PSPC1	67	92.571	ENSHGLG00100007962	PSPC1	100	92.571	Heterocephalus_glaber_male
ENSOGAG00000012643	PSPC1	80	66.194	ENSHCOG00000013251	pspc1	83	70.053	Hippocampus_comes
ENSOGAG00000012643	PSPC1	99	67.598	ENSIPUG00000013192	pspc1	91	72.371	Ictalurus_punctatus
ENSOGAG00000012643	PSPC1	100	98.279	ENSSTOG00000026833	PSPC1	100	98.279	Ictidomys_tridecemlineatus
ENSOGAG00000012643	PSPC1	100	97.706	ENSJJAG00000018334	Pspc1	100	97.706	Jaculus_jaculus
ENSOGAG00000012643	PSPC1	88	55.724	ENSKMAG00000013525	-	88	53.527	Kryptolebias_marmoratus
ENSOGAG00000012643	PSPC1	96	64.751	ENSLBEG00000004474	pspc1	78	70.766	Labrus_bergylta
ENSOGAG00000012643	PSPC1	99	77.444	ENSLACG00000010762	PSPC1	88	85.345	Latimeria_chalumnae
ENSOGAG00000012643	PSPC1	88	84.599	ENSLOCG00000010832	pspc1	94	82.427	Lepisosteus_oculatus
ENSOGAG00000012643	PSPC1	100	97.706	ENSLAFG00000010968	PSPC1	100	97.706	Loxodonta_africana
ENSOGAG00000012643	PSPC1	100	98.662	ENSMFAG00000032728	PSPC1	100	98.662	Macaca_fascicularis
ENSOGAG00000012643	PSPC1	100	98.662	ENSMMUG00000020262	PSPC1	100	98.662	Macaca_mulatta
ENSOGAG00000012643	PSPC1	100	98.662	ENSMNEG00000027401	PSPC1	100	98.662	Macaca_nemestrina
ENSOGAG00000012643	PSPC1	100	99.499	ENSMLEG00000039043	PSPC1	99	100.000	Mandrillus_leucophaeus
ENSOGAG00000012643	PSPC1	88	67.629	ENSMAMG00000004333	pspc1	77	71.860	Mastacembelus_armatus
ENSOGAG00000012643	PSPC1	99	56.881	ENSMZEG00005005726	pspc1	87	59.101	Maylandia_zebra
ENSOGAG00000012643	PSPC1	77	93.842	ENSMGAG00000015134	PSPC1	100	93.842	Meleagris_gallopavo
ENSOGAG00000012643	PSPC1	88	91.991	ENSMAUG00000021067	Pspc1	99	91.991	Mesocricetus_auratus
ENSOGAG00000012643	PSPC1	100	98.853	ENSMICG00000013970	PSPC1	100	98.853	Microcebus_murinus
ENSOGAG00000012643	PSPC1	100	97.897	ENSMOCG00000006060	Pspc1	100	97.897	Microtus_ochrogaster
ENSOGAG00000012643	PSPC1	92	43.411	ENSMMOG00000004352	pspc1	58	52.923	Mola_mola
ENSOGAG00000012643	PSPC1	93	96.907	ENSMODG00000008029	PSPC1	78	96.907	Monodelphis_domestica
ENSOGAG00000012643	PSPC1	88	69.742	ENSMALG00000008914	pspc1	88	67.804	Monopterus_albus
ENSOGAG00000012643	PSPC1	100	97.710	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.710	Mus_caroli
ENSOGAG00000012643	PSPC1	100	97.901	ENSMUSG00000021938	Pspc1	100	97.901	Mus_musculus
ENSOGAG00000012643	PSPC1	100	97.710	MGP_PahariEiJ_G0030359	Pspc1	100	97.710	Mus_pahari
ENSOGAG00000012643	PSPC1	100	97.710	MGP_SPRETEiJ_G0020232	Pspc1	100	97.710	Mus_spretus
ENSOGAG00000012643	PSPC1	100	98.279	ENSMPUG00000013347	PSPC1	100	98.279	Mustela_putorius_furo
ENSOGAG00000012643	PSPC1	100	96.578	ENSMLUG00000017663	PSPC1	100	96.578	Myotis_lucifugus
ENSOGAG00000012643	PSPC1	100	97.706	ENSNGAG00000011271	Pspc1	100	97.706	Nannospalax_galili
ENSOGAG00000012643	PSPC1	74	65.140	ENSNBRG00000014059	pspc1	76	69.207	Neolamprologus_brichardi
ENSOGAG00000012643	PSPC1	100	98.853	ENSNLEG00000001294	PSPC1	100	98.853	Nomascus_leucogenys
ENSOGAG00000012643	PSPC1	84	96.094	ENSMEUG00000000476	PSPC1	84	96.094	Notamacropus_eugenii
ENSOGAG00000012643	PSPC1	100	85.305	ENSODEG00000019012	-	100	85.633	Octodon_degus
ENSOGAG00000012643	PSPC1	100	86.233	ENSODEG00000007817	-	100	81.096	Octodon_degus
ENSOGAG00000012643	PSPC1	99	65.047	ENSONIG00000012010	pspc1	87	69.068	Oreochromis_niloticus
ENSOGAG00000012643	PSPC1	76	97.995	ENSOANG00000009017	-	100	97.995	Ornithorhynchus_anatinus
ENSOGAG00000012643	PSPC1	99	66.603	ENSOANG00000011381	-	99	63.810	Ornithorhynchus_anatinus
ENSOGAG00000012643	PSPC1	100	98.853	ENSOCUG00000006153	PSPC1	100	98.853	Oryctolagus_cuniculus
ENSOGAG00000012643	PSPC1	88	70.213	ENSORLG00000004232	-	91	63.241	Oryzias_latipes
ENSOGAG00000012643	PSPC1	88	69.787	ENSORLG00020000578	PSPC1	91	64.200	Oryzias_latipes_hni
ENSOGAG00000012643	PSPC1	88	70.638	ENSORLG00015017480	pspc1	86	67.391	Oryzias_latipes_hsok
ENSOGAG00000012643	PSPC1	100	91.429	ENSOARG00000014163	PSPC1	100	91.429	Ovis_aries
ENSOGAG00000012643	PSPC1	89	92.903	ENSPPAG00000009836	PSPC1	93	99.695	Pan_paniscus
ENSOGAG00000012643	PSPC1	100	98.662	ENSPPRG00000008833	PSPC1	100	98.662	Panthera_pardus
ENSOGAG00000012643	PSPC1	100	82.792	ENSPTIG00000016917	PSPC1	100	82.792	Panthera_tigris_altaica
ENSOGAG00000012643	PSPC1	98	97.471	ENSPTRG00000005677	PSPC1	99	98.971	Pan_troglodytes
ENSOGAG00000012643	PSPC1	100	98.853	ENSPANG00000001992	PSPC1	100	98.853	Papio_anubis
ENSOGAG00000012643	PSPC1	82	78.322	ENSPKIG00000003578	pspc1	81	77.650	Paramormyrops_kingsleyae
ENSOGAG00000012643	PSPC1	99	87.218	ENSPSIG00000005168	PSPC1	99	87.500	Pelodiscus_sinensis
ENSOGAG00000012643	PSPC1	59	70.476	ENSPMGG00000015135	pspc1	85	70.968	Periophthalmus_magnuspinnatus
ENSOGAG00000012643	PSPC1	100	98.088	ENSPEMG00000015214	Pspc1	100	98.088	Peromyscus_maniculatus_bairdii
ENSOGAG00000012643	PSPC1	53	45.070	ENSPMAG00000004618	pspc1	86	45.070	Petromyzon_marinus
ENSOGAG00000012643	PSPC1	99	97.318	ENSPCIG00000017680	PSPC1	100	97.318	Phascolarctos_cinereus
ENSOGAG00000012643	PSPC1	92	67.683	ENSPFOG00000003362	pspc1	88	68.288	Poecilia_formosa
ENSOGAG00000012643	PSPC1	92	67.683	ENSPLAG00000011540	pspc1	87	68.288	Poecilia_latipinna
ENSOGAG00000012643	PSPC1	70	64.595	ENSPLAG00000004407	-	53	60.212	Poecilia_latipinna
ENSOGAG00000012643	PSPC1	68	65.110	ENSPMEG00000001025	-	52	60.638	Poecilia_mexicana
ENSOGAG00000012643	PSPC1	92	67.276	ENSPMEG00000008322	pspc1	87	67.865	Poecilia_mexicana
ENSOGAG00000012643	PSPC1	92	67.276	ENSPREG00000007786	pspc1	87	67.865	Poecilia_reticulata
ENSOGAG00000012643	PSPC1	100	98.279	ENSPPYG00000005186	PSPC1	100	98.279	Pongo_abelii
ENSOGAG00000012643	PSPC1	67	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSOGAG00000012643	PSPC1	100	95.029	ENSPCOG00000014364	PSPC1	100	95.029	Propithecus_coquereli
ENSOGAG00000012643	PSPC1	100	93.690	ENSPVAG00000005036	PSPC1	100	94.084	Pteropus_vampyrus
ENSOGAG00000012643	PSPC1	99	57.914	ENSPNYG00000008893	pspc1	87	59.101	Pundamilia_nyererei
ENSOGAG00000012643	PSPC1	99	67.970	ENSPNAG00000016511	pspc1	91	71.488	Pygocentrus_nattereri
ENSOGAG00000012643	PSPC1	100	97.897	ENSRNOG00000020782	Pspc1	100	97.897	Rattus_norvegicus
ENSOGAG00000012643	PSPC1	93	98.768	ENSRBIG00000036057	PSPC1	100	98.768	Rhinopithecus_bieti
ENSOGAG00000012643	PSPC1	100	98.853	ENSRROG00000036334	PSPC1	100	98.853	Rhinopithecus_roxellana
ENSOGAG00000012643	PSPC1	79	88.862	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSOGAG00000012643	PSPC1	100	92.000	ENSSHAG00000004696	PSPC1	100	92.000	Sarcophilus_harrisii
ENSOGAG00000012643	PSPC1	81	79.391	ENSSFOG00015001395	pspc1	90	78.605	Scleropages_formosus
ENSOGAG00000012643	PSPC1	96	64.286	ENSSMAG00000001761	pspc1	85	74.855	Scophthalmus_maximus
ENSOGAG00000012643	PSPC1	88	69.168	ENSSDUG00000010651	pspc1	76	74.419	Seriola_dumerili
ENSOGAG00000012643	PSPC1	88	64.719	ENSSLDG00000004284	pspc1	81	62.269	Seriola_lalandi_dorsalis
ENSOGAG00000012643	PSPC1	100	89.293	ENSSARG00000000888	PSPC1	100	88.994	Sorex_araneus
ENSOGAG00000012643	PSPC1	89	53.814	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSOGAG00000012643	PSPC1	99	75.472	ENSSPUG00000008550	PSPC1	89	81.277	Sphenodon_punctatus
ENSOGAG00000012643	PSPC1	91	67.465	ENSSPAG00000001921	pspc1	81	71.141	Stegastes_partitus
ENSOGAG00000012643	PSPC1	100	97.328	ENSSSCG00000009569	PSPC1	100	97.328	Sus_scrofa
ENSOGAG00000012643	PSPC1	89	94.861	ENSTGUG00000011295	PSPC1	100	94.861	Taeniopygia_guttata
ENSOGAG00000012643	PSPC1	88	63.270	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSOGAG00000012643	PSPC1	88	65.236	ENSTNIG00000010358	pspc1	88	65.148	Tetraodon_nigroviridis
ENSOGAG00000012643	PSPC1	100	77.247	ENSTBEG00000002361	PSPC1	100	76.527	Tupaia_belangeri
ENSOGAG00000012643	PSPC1	100	97.132	ENSTTRG00000003343	PSPC1	100	97.132	Tursiops_truncatus
ENSOGAG00000012643	PSPC1	67	98.006	ENSUAMG00000012309	PSPC1	100	98.006	Ursus_americanus
ENSOGAG00000012643	PSPC1	93	98.563	ENSUMAG00000013993	PSPC1	100	98.563	Ursus_maritimus
ENSOGAG00000012643	PSPC1	76	99.248	ENSVPAG00000010029	PSPC1	100	99.248	Vicugna_pacos
ENSOGAG00000012643	PSPC1	100	98.662	ENSVVUG00000006414	PSPC1	100	98.662	Vulpes_vulpes
ENSOGAG00000012643	PSPC1	65	73.654	ENSXCOG00000017438	pspc1	84	73.034	Xiphophorus_couchianus
ENSOGAG00000012643	PSPC1	65	73.315	ENSXMAG00000007929	pspc1	84	73.315	Xiphophorus_maculatus