EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOGAG00000012866 (Gene tree)
Gene ID: 100963644
Gene Symbol: UPF1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Otolemur_garnettii
Status: putative
Strand: Plus strand
Length: 38169 bases
Position: chrGL873624.1:4009110-4047278
Accession: 100963644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOGAP00000011534	UPF1_Zn_bind	PF09416.10	4.7e-75	1	1
ENSOGAP00000011534	ResIII	PF04851.15	1.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOGAT00000012872	UPF1-201	3628	-	ENSOGAP00000011534	1118 (aa)	XP_003796631	H0X7W8

Gene Model

Click here to download ENSOGAG00000012866's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOGAG00000012866's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOGAG00000012866	UPF1	100	99.911	ENSG00000005007	UPF1	100	99.911	Homo_sapiens
ENSOGAG00000012866	UPF1	100	91.281	ENSAPOG00000023773	upf1	100	91.370	Acanthochromis_polyacanthus
ENSOGAG00000012866	UPF1	100	92.596	ENSAPOG00000010916	-	100	92.596	Acanthochromis_polyacanthus
ENSOGAG00000012866	UPF1	100	97.440	ENSAMEG00000011474	UPF1	100	97.440	Ailuropoda_melanoleuca
ENSOGAG00000012866	UPF1	92	94.927	ENSACIG00000010985	-	100	95.024	Amphilophus_citrinellus
ENSOGAG00000012866	UPF1	100	91.111	ENSACIG00000019949	upf1	100	91.459	Amphilophus_citrinellus
ENSOGAG00000012866	UPF1	100	90.795	ENSAOCG00000018519	upf1	100	91.366	Amphiprion_ocellaris
ENSOGAG00000012866	UPF1	100	92.685	ENSAOCG00000006352	-	100	92.685	Amphiprion_ocellaris
ENSOGAG00000012866	UPF1	100	92.685	ENSAPEG00000006292	-	100	92.685	Amphiprion_percula
ENSOGAG00000012866	UPF1	100	90.795	ENSAPEG00000016344	upf1	100	91.366	Amphiprion_percula
ENSOGAG00000012866	UPF1	100	92.685	ENSATEG00000016606	-	100	92.685	Anabas_testudineus
ENSOGAG00000012866	UPF1	100	89.974	ENSATEG00000017867	upf1	100	90.765	Anabas_testudineus
ENSOGAG00000012866	UPF1	93	98.002	ENSAPLG00000009175	UPF1	99	98.002	Anas_platyrhynchos
ENSOGAG00000012866	UPF1	95	96.093	ENSANAG00000024107	UPF1	97	96.093	Aotus_nancymaae
ENSOGAG00000012866	UPF1	100	92.417	ENSACLG00000022630	-	100	92.328	Astatotilapia_calliptera
ENSOGAG00000012866	UPF1	100	90.844	ENSACLG00000007181	upf1	100	91.192	Astatotilapia_calliptera
ENSOGAG00000012866	UPF1	100	93.048	ENSAMXG00000042187	upf1	100	93.494	Astyanax_mexicanus
ENSOGAG00000012866	UPF1	100	98.319	ENSBTAG00000020922	UPF1	100	98.319	Bos_taurus
ENSOGAG00000012866	UPF1	89	50.639	WBGene00004880	smg-2	99	48.029	Caenorhabditis_elegans
ENSOGAG00000012866	UPF1	100	98.937	ENSCJAG00000019627	UPF1	100	98.937	Callithrix_jacchus
ENSOGAG00000012866	UPF1	100	98.761	ENSCAFG00000014578	UPF1	100	98.761	Canis_familiaris
ENSOGAG00000012866	UPF1	100	99.732	ENSCAFG00020012347	UPF1	100	99.732	Canis_lupus_dingo
ENSOGAG00000012866	UPF1	100	99.285	ENSCHIG00000011018	UPF1	100	99.285	Capra_hircus
ENSOGAG00000012866	UPF1	96	97.043	ENSTSYG00000008877	UPF1	99	97.043	Carlito_syrichta
ENSOGAG00000012866	UPF1	93	98.099	ENSCAPG00000005758	UPF1	95	98.099	Cavia_aperea
ENSOGAG00000012866	UPF1	100	95.844	ENSCPOG00000025463	UPF1	100	95.844	Cavia_porcellus
ENSOGAG00000012866	UPF1	100	99.911	ENSCCAG00000032175	UPF1	100	99.911	Cebus_capucinus
ENSOGAG00000012866	UPF1	95	97.290	ENSCATG00000040306	UPF1	98	97.290	Cercocebus_atys
ENSOGAG00000012866	UPF1	96	97.412	ENSCLAG00000004037	UPF1	100	98.669	Chinchilla_lanigera
ENSOGAG00000012866	UPF1	100	99.821	ENSCSAG00000005276	UPF1	100	99.821	Chlorocebus_sabaeus
ENSOGAG00000012866	UPF1	100	96.886	ENSCPBG00000012513	UPF1	100	96.886	Chrysemys_picta_bellii
ENSOGAG00000012866	UPF1	78	78.007	ENSCING00000021399	-	99	78.236	Ciona_intestinalis
ENSOGAG00000012866	UPF1	99	71.972	ENSCSAVG00000006533	-	99	71.972	Ciona_savignyi
ENSOGAG00000012866	UPF1	95	98.131	ENSCANG00000029819	UPF1	99	98.131	Colobus_angolensis_palliatus
ENSOGAG00000012866	UPF1	100	98.658	ENSCGRG00001021067	Upf1	100	98.658	Cricetulus_griseus_chok1gshd
ENSOGAG00000012866	UPF1	95	97.194	ENSCGRG00000013480	Upf1	99	97.194	Cricetulus_griseus_crigri
ENSOGAG00000012866	UPF1	100	86.262	ENSCSEG00000017239	upf1	100	86.351	Cynoglossus_semilaevis
ENSOGAG00000012866	UPF1	100	92.589	ENSCSEG00000016159	-	100	92.500	Cynoglossus_semilaevis
ENSOGAG00000012866	UPF1	100	92.417	ENSCVAG00000010561	upf1	100	92.328	Cyprinodon_variegatus
ENSOGAG00000012866	UPF1	100	92.870	ENSDARG00000016302	upf1	100	93.316	Danio_rerio
ENSOGAG00000012866	UPF1	95	94.949	ENSDORG00000009984	Upf1	95	95.825	Dipodomys_ordii
ENSOGAG00000012866	UPF1	85	70.941	FBgn0030354	Upf1	84	67.433	Drosophila_melanogaster
ENSOGAG00000012866	UPF1	55	85.575	ENSEBUG00000010069	upf1	96	85.413	Eptatretus_burgeri
ENSOGAG00000012866	UPF1	100	99.285	ENSEASG00005006549	UPF1	100	99.285	Equus_asinus_asinus
ENSOGAG00000012866	UPF1	100	99.285	ENSECAG00000010639	UPF1	100	99.285	Equus_caballus
ENSOGAG00000012866	UPF1	100	90.328	ENSELUG00000020917	upf1	100	90.594	Esox_lucius
ENSOGAG00000012866	UPF1	100	91.755	ENSELUG00000012916	-	100	91.674	Esox_lucius
ENSOGAG00000012866	UPF1	100	98.673	ENSFCAG00000009757	UPF1	100	98.673	Felis_catus
ENSOGAG00000012866	UPF1	96	96.849	ENSFALG00000009312	UPF1	99	96.849	Ficedula_albicollis
ENSOGAG00000012866	UPF1	97	96.150	ENSFDAG00000014816	UPF1	100	98.574	Fukomys_damarensis
ENSOGAG00000012866	UPF1	85	95.477	ENSFHEG00000016276	-	96	95.477	Fundulus_heteroclitus
ENSOGAG00000012866	UPF1	100	88.407	ENSFHEG00000006428	upf1	100	88.407	Fundulus_heteroclitus
ENSOGAG00000012866	UPF1	100	91.166	ENSGMOG00000007541	upf1	100	91.608	Gadus_morhua
ENSOGAG00000012866	UPF1	100	97.766	ENSGALG00000003220	UPF1	100	97.766	Gallus_gallus
ENSOGAG00000012866	UPF1	62	95.533	ENSGAFG00000015443	-	88	93.166	Gambusia_affinis
ENSOGAG00000012866	UPF1	100	92.321	ENSGAFG00000004831	upf1	100	92.232	Gambusia_affinis
ENSOGAG00000012866	UPF1	100	97.232	ENSGAGG00000022217	UPF1	100	97.232	Gopherus_agassizii
ENSOGAG00000012866	UPF1	93	99.904	ENSGGOG00000002608	UPF1	99	99.904	Gorilla_gorilla
ENSOGAG00000012866	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSOGAG00000012866	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSOGAG00000012866	UPF1	100	98.229	ENSHGLG00000010900	UPF1	100	98.229	Heterocephalus_glaber_female
ENSOGAG00000012866	UPF1	96	94.829	ENSHGLG00100005904	UPF1	99	94.829	Heterocephalus_glaber_male
ENSOGAG00000012866	UPF1	100	91.607	ENSHCOG00000008918	upf1	100	93.907	Hippocampus_comes
ENSOGAG00000012866	UPF1	100	93.494	ENSIPUG00000005108	UPF1	100	93.850	Ictalurus_punctatus
ENSOGAG00000012866	UPF1	100	99.732	ENSSTOG00000009196	UPF1	100	99.732	Ictidomys_tridecemlineatus
ENSOGAG00000012866	UPF1	100	97.431	ENSJJAG00000023151	Upf1	100	97.431	Jaculus_jaculus
ENSOGAG00000012866	UPF1	100	92.774	ENSKMAG00000004962	upf1	100	92.685	Kryptolebias_marmoratus
ENSOGAG00000012866	UPF1	100	92.335	ENSLBEG00000027848	-	100	92.335	Labrus_bergylta
ENSOGAG00000012866	UPF1	100	89.427	ENSLBEG00000014862	upf1	100	90.573	Labrus_bergylta
ENSOGAG00000012866	UPF1	62	97.418	ENSLACG00000008482	UPF1	100	97.418	Latimeria_chalumnae
ENSOGAG00000012866	UPF1	100	95.089	ENSLOCG00000002072	upf1	100	95.089	Lepisosteus_oculatus
ENSOGAG00000012866	UPF1	100	97.699	ENSLAFG00000014963	UPF1	100	97.699	Loxodonta_africana
ENSOGAG00000012866	UPF1	100	98.937	ENSMFAG00000037748	UPF1	100	98.937	Macaca_fascicularis
ENSOGAG00000012866	UPF1	100	98.937	ENSMMUG00000023286	UPF1	100	98.937	Macaca_mulatta
ENSOGAG00000012866	UPF1	100	98.937	ENSMNEG00000000046	UPF1	100	98.937	Macaca_nemestrina
ENSOGAG00000012866	UPF1	93	98.859	ENSMLEG00000028404	UPF1	100	98.859	Mandrillus_leucophaeus
ENSOGAG00000012866	UPF1	100	91.711	ENSMAMG00000006231	-	100	92.157	Mastacembelus_armatus
ENSOGAG00000012866	UPF1	100	89.710	ENSMAMG00000006229	upf1	100	90.677	Mastacembelus_armatus
ENSOGAG00000012866	UPF1	100	92.417	ENSMZEG00005016386	-	100	92.328	Maylandia_zebra
ENSOGAG00000012866	UPF1	100	89.807	ENSMZEG00005003489	upf1	100	90.989	Maylandia_zebra
ENSOGAG00000012866	UPF1	93	97.529	ENSMGAG00000004745	UPF1	100	97.529	Meleagris_gallopavo
ENSOGAG00000012866	UPF1	95	96.475	ENSMAUG00000011398	Upf1	97	96.475	Mesocricetus_auratus
ENSOGAG00000012866	UPF1	100	99.642	ENSMICG00000001659	UPF1	100	99.642	Microcebus_murinus
ENSOGAG00000012866	UPF1	100	97.520	ENSMOCG00000005699	Upf1	100	97.520	Microtus_ochrogaster
ENSOGAG00000012866	UPF1	93	92.610	ENSMMOG00000007537	-	99	92.706	Mola_mola
ENSOGAG00000012866	UPF1	100	90.617	ENSMMOG00000007881	upf1	100	91.071	Mola_mola
ENSOGAG00000012866	UPF1	100	97.264	ENSMODG00000003689	UPF1	100	97.264	Monodelphis_domestica
ENSOGAG00000012866	UPF1	100	91.385	ENSMALG00000018100	-	100	91.385	Monopterus_albus
ENSOGAG00000012866	UPF1	100	90.795	ENSMALG00000000144	upf1	100	91.063	Monopterus_albus
ENSOGAG00000012866	UPF1	100	98.569	MGP_CAROLIEiJ_G0031142	Upf1	100	98.569	Mus_caroli
ENSOGAG00000012866	UPF1	100	98.569	ENSMUSG00000058301	Upf1	100	98.569	Mus_musculus
ENSOGAG00000012866	UPF1	100	98.569	MGP_PahariEiJ_G0021607	Upf1	100	98.569	Mus_pahari
ENSOGAG00000012866	UPF1	100	98.569	MGP_SPRETEiJ_G0032260	Upf1	100	98.569	Mus_spretus
ENSOGAG00000012866	UPF1	100	99.732	ENSMPUG00000015516	UPF1	100	99.732	Mustela_putorius_furo
ENSOGAG00000012866	UPF1	99	99.283	ENSMLUG00000012122	UPF1	99	99.283	Myotis_lucifugus
ENSOGAG00000012866	UPF1	100	97.786	ENSNGAG00000024107	Upf1	100	97.786	Nannospalax_galili
ENSOGAG00000012866	UPF1	100	89.156	ENSNBRG00000000670	upf1	100	89.502	Neolamprologus_brichardi
ENSOGAG00000012866	UPF1	100	89.071	ENSNBRG00000022069	-	100	93.975	Neolamprologus_brichardi
ENSOGAG00000012866	UPF1	93	93.061	ENSNLEG00000006062	UPF1	100	93.061	Nomascus_leucogenys
ENSOGAG00000012866	UPF1	83	94.510	ENSMEUG00000014146	-	83	94.510	Notamacropus_eugenii
ENSOGAG00000012866	UPF1	93	91.643	ENSOPRG00000014018	UPF1	100	91.643	Ochotona_princeps
ENSOGAG00000012866	UPF1	100	96.988	ENSODEG00000012426	UPF1	100	96.988	Octodon_degus
ENSOGAG00000012866	UPF1	100	92.507	ENSONIG00000012729	-	100	92.417	Oreochromis_niloticus
ENSOGAG00000012866	UPF1	100	90.070	ENSONIG00000010452	upf1	100	91.254	Oreochromis_niloticus
ENSOGAG00000012866	UPF1	100	96.466	ENSOANG00000004568	UPF1	100	96.466	Ornithorhynchus_anatinus
ENSOGAG00000012866	UPF1	100	92.507	ENSORLG00000008453	upf1	100	92.507	Oryzias_latipes
ENSOGAG00000012866	UPF1	100	92.335	ENSORLG00020014758	upf1	100	92.335	Oryzias_latipes_hni
ENSOGAG00000012866	UPF1	100	92.335	ENSORLG00015010165	upf1	100	92.335	Oryzias_latipes_hsok
ENSOGAG00000012866	UPF1	100	92.596	ENSOMEG00000003665	upf1	100	92.507	Oryzias_melastigma
ENSOGAG00000012866	UPF1	96	96.320	ENSOARG00000010739	UPF1	100	96.320	Ovis_aries
ENSOGAG00000012866	UPF1	95	97.944	ENSPPAG00000043884	UPF1	97	97.944	Pan_paniscus
ENSOGAG00000012866	UPF1	100	98.673	ENSPPRG00000023470	UPF1	100	98.673	Panthera_pardus
ENSOGAG00000012866	UPF1	93	97.692	ENSPTIG00000010159	UPF1	99	97.692	Panthera_tigris_altaica
ENSOGAG00000012866	UPF1	100	98.937	ENSPTRG00000010721	UPF1	100	98.937	Pan_troglodytes
ENSOGAG00000012866	UPF1	100	98.937	ENSPANG00000008847	UPF1	100	98.937	Papio_anubis
ENSOGAG00000012866	UPF1	91	94.732	ENSPKIG00000006069	upf1	99	92.250	Paramormyrops_kingsleyae
ENSOGAG00000012866	UPF1	68	98.039	ENSPSIG00000009491	UPF1	100	98.039	Pelodiscus_sinensis
ENSOGAG00000012866	UPF1	100	89.146	ENSPMGG00000017327	upf1	100	89.254	Periophthalmus_magnuspinnatus
ENSOGAG00000012866	UPF1	100	97.697	ENSPEMG00000001085	Upf1	100	97.697	Peromyscus_maniculatus_bairdii
ENSOGAG00000012866	UPF1	100	87.088	ENSPMAG00000001206	upf1	100	86.525	Petromyzon_marinus
ENSOGAG00000012866	UPF1	100	98.749	ENSPCIG00000006156	UPF1	100	98.749	Phascolarctos_cinereus
ENSOGAG00000012866	UPF1	100	92.411	ENSPLAG00000016232	-	100	92.321	Poecilia_latipinna
ENSOGAG00000012866	UPF1	100	89.381	ENSPLAG00000018155	-	100	89.292	Poecilia_latipinna
ENSOGAG00000012866	UPF1	100	89.929	ENSPMEG00000011443	-	100	89.840	Poecilia_mexicana
ENSOGAG00000012866	UPF1	100	92.328	ENSPMEG00000016319	-	100	92.239	Poecilia_mexicana
ENSOGAG00000012866	UPF1	100	92.232	ENSPREG00000011247	-	100	92.143	Poecilia_reticulata
ENSOGAG00000012866	UPF1	100	89.823	ENSPREG00000009940	upf1	100	89.823	Poecilia_reticulata
ENSOGAG00000012866	UPF1	100	93.977	ENSPPYG00000009752	UPF1	100	93.977	Pongo_abelii
ENSOGAG00000012866	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSOGAG00000012866	UPF1	100	98.583	ENSPCOG00000023813	UPF1	100	98.583	Propithecus_coquereli
ENSOGAG00000012866	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSOGAG00000012866	UPF1	100	89.807	ENSPNYG00000003694	upf1	100	90.989	Pundamilia_nyererei
ENSOGAG00000012866	UPF1	100	92.417	ENSPNYG00000016731	-	100	92.328	Pundamilia_nyererei
ENSOGAG00000012866	UPF1	100	93.048	ENSPNAG00000025614	upf1	100	93.494	Pygocentrus_nattereri
ENSOGAG00000012866	UPF1	100	98.569	ENSRNOG00000020134	Upf1	100	98.569	Rattus_norvegicus
ENSOGAG00000012866	UPF1	95	95.794	ENSRBIG00000013894	UPF1	98	99.671	Rhinopithecus_bieti
ENSOGAG00000012866	UPF1	95	98.131	ENSRROG00000040935	UPF1	98	99.671	Rhinopithecus_roxellana
ENSOGAG00000012866	UPF1	75	55.962	YMR080C	NAM7	86	55.962	Saccharomyces_cerevisiae
ENSOGAG00000012866	UPF1	95	97.302	ENSSBOG00000023632	UPF1	98	97.302	Saimiri_boliviensis_boliviensis
ENSOGAG00000012866	UPF1	93	97.911	ENSSHAG00000010499	UPF1	100	97.911	Sarcophilus_harrisii
ENSOGAG00000012866	UPF1	100	94.915	ENSSFOG00015021095	upf1	99	97.310	Scleropages_formosus
ENSOGAG00000012866	UPF1	100	89.075	ENSSMAG00000005055	upf1	100	89.877	Scophthalmus_maximus
ENSOGAG00000012866	UPF1	100	92.513	ENSSMAG00000021018	-	100	92.513	Scophthalmus_maximus
ENSOGAG00000012866	UPF1	100	89.974	ENSSDUG00000013320	upf1	100	90.941	Seriola_dumerili
ENSOGAG00000012866	UPF1	100	92.692	ENSSDUG00000009629	-	100	92.692	Seriola_dumerili
ENSOGAG00000012866	UPF1	100	92.692	ENSSLDG00000006878	-	100	92.692	Seriola_lalandi_dorsalis
ENSOGAG00000012866	UPF1	100	90.772	ENSSLDG00000020868	upf1	100	91.231	Seriola_lalandi_dorsalis
ENSOGAG00000012866	UPF1	100	97.140	ENSSPUG00000010538	UPF1	100	97.140	Sphenodon_punctatus
ENSOGAG00000012866	UPF1	100	92.679	ENSSPAG00000011521	-	100	92.589	Stegastes_partitus
ENSOGAG00000012866	UPF1	100	89.286	ENSSPAG00000000003	upf1	100	89.225	Stegastes_partitus
ENSOGAG00000012866	UPF1	100	99.196	ENSSSCG00000039301	UPF1	100	99.196	Sus_scrofa
ENSOGAG00000012866	UPF1	83	89.490	ENSTGUG00000001057	UPF1	100	95.280	Taeniopygia_guttata
ENSOGAG00000012866	UPF1	100	91.518	ENSTRUG00000005131	-	100	91.518	Takifugu_rubripes
ENSOGAG00000012866	UPF1	100	90.527	ENSTRUG00000000150	upf1	100	90.527	Takifugu_rubripes
ENSOGAG00000012866	UPF1	100	95.442	ENSTTRG00000011544	UPF1	100	94.817	Tursiops_truncatus
ENSOGAG00000012866	UPF1	100	99.643	ENSUAMG00000007093	UPF1	100	99.643	Ursus_americanus
ENSOGAG00000012866	UPF1	95	98.584	ENSUMAG00000006652	UPF1	99	100.000	Ursus_maritimus
ENSOGAG00000012866	UPF1	100	99.732	ENSVVUG00000007797	UPF1	100	99.732	Vulpes_vulpes
ENSOGAG00000012866	UPF1	100	82.291	ENSXETG00000013602	upf1	100	82.291	Xenopus_tropicalis
ENSOGAG00000012866	UPF1	92	94.956	ENSXCOG00000005764	-	100	94.956	Xiphophorus_couchianus
ENSOGAG00000012866	UPF1	97	89.751	ENSXCOG00000015275	-	96	89.658	Xiphophorus_couchianus
ENSOGAG00000012866	UPF1	100	92.150	ENSXMAG00000002540	-	100	92.061	Xiphophorus_maculatus
ENSOGAG00000012866	UPF1	100	90.000	ENSXMAG00000001703	-	100	89.911	Xiphophorus_maculatus