EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOGAG00000027992 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Otolemur_garnettii
Status: putative
Strand: Minus strand
Length: 9334 bases
Position: chrGL873624.1:3465728-3475061
Accession: 17259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOGAP00000015984	LSM	PF01423.22	6.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOGAT00000034116	LSM4-201	438	-	ENSOGAP00000015984	146 (aa)	-	H0XIP4

Gene Model

Click here to download ENSOGAG00000027992's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOGAG00000027992's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOGAG00000027992	LSM4	73	30.841	ENSOGAG00000012708	SNRPD3	69	31.068

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOGAG00000027992	LSM4	60	100.000	ENSG00000130520	LSM4	97	74.627	Homo_sapiens
ENSOGAG00000027992	LSM4	67	95.918	ENSAPOG00000005643	lsm4	65	95.918	Acanthochromis_polyacanthus
ENSOGAG00000027992	LSM4	60	100.000	ENSAMEG00000011162	LSM4	68	99.000	Ailuropoda_melanoleuca
ENSOGAG00000027992	LSM4	67	95.918	ENSAOCG00000006414	lsm4	66	95.918	Amphiprion_ocellaris
ENSOGAG00000027992	LSM4	67	95.918	ENSAPEG00000006238	lsm4	66	95.918	Amphiprion_percula
ENSOGAG00000027992	LSM4	67	95.918	ENSATEG00000016559	lsm4	64	95.918	Anabas_testudineus
ENSOGAG00000027992	LSM4	60	100.000	ENSANAG00000034659	LSM4	71	98.990	Aotus_nancymaae
ENSOGAG00000027992	LSM4	75	82.927	ENSACLG00000022738	lsm4	67	95.918	Astatotilapia_calliptera
ENSOGAG00000027992	LSM4	91	79.699	ENSAMXG00000016932	lsm4	69	94.898	Astyanax_mexicanus
ENSOGAG00000027992	LSM4	60	100.000	ENSBTAG00000008578	LSM4	72	99.000	Bos_taurus
ENSOGAG00000027992	LSM4	56	76.829	WBGene00003078	lsm-4	80	68.687	Caenorhabditis_elegans
ENSOGAG00000027992	LSM4	60	100.000	ENSCJAG00000014171	LSM4	71	98.990	Callithrix_jacchus
ENSOGAG00000027992	LSM4	60	100.000	ENSCAFG00000014900	LSM4	65	98.990	Canis_familiaris
ENSOGAG00000027992	LSM4	60	100.000	ENSCAFG00020012137	LSM4	71	98.990	Canis_lupus_dingo
ENSOGAG00000027992	LSM4	60	100.000	ENSCHIG00000010928	LSM4	66	99.000	Capra_hircus
ENSOGAG00000027992	LSM4	60	98.851	ENSTSYG00000030906	LSM4	71	97.980	Carlito_syrichta
ENSOGAG00000027992	LSM4	60	98.851	ENSCAPG00000014140	LSM4	71	96.970	Cavia_aperea
ENSOGAG00000027992	LSM4	60	98.851	ENSCPOG00000024117	LSM4	71	96.970	Cavia_porcellus
ENSOGAG00000027992	LSM4	60	100.000	ENSCCAG00000036308	LSM4	71	98.990	Cebus_capucinus
ENSOGAG00000027992	LSM4	60	100.000	ENSCATG00000029311	LSM4	99	75.000	Cercocebus_atys
ENSOGAG00000027992	LSM4	60	100.000	ENSCLAG00000010828	LSM4	71	97.980	Chinchilla_lanigera
ENSOGAG00000027992	LSM4	60	100.000	ENSCSAG00000005370	LSM4	71	98.990	Chlorocebus_sabaeus
ENSOGAG00000027992	LSM4	89	80.769	ENSCPBG00000012925	LSM4	72	96.970	Chrysemys_picta_bellii
ENSOGAG00000027992	LSM4	59	90.698	ENSCING00000007519	-	72	91.209	Ciona_intestinalis
ENSOGAG00000027992	LSM4	59	91.860	ENSCSAVG00000008596	-	73	92.308	Ciona_savignyi
ENSOGAG00000027992	LSM4	60	100.000	ENSCANG00000043686	LSM4	99	72.857	Colobus_angolensis_palliatus
ENSOGAG00000027992	LSM4	60	96.552	ENSCGRG00001014436	Lsm4	71	94.949	Cricetulus_griseus_chok1gshd
ENSOGAG00000027992	LSM4	60	96.552	ENSCGRG00000009398	Lsm4	72	94.949	Cricetulus_griseus_crigri
ENSOGAG00000027992	LSM4	66	94.792	ENSCSEG00000016127	lsm4	69	94.898	Cynoglossus_semilaevis
ENSOGAG00000027992	LSM4	90	69.466	ENSCVAG00000021828	lsm4	64	94.048	Cyprinodon_variegatus
ENSOGAG00000027992	LSM4	99	72.414	ENSCVAG00000010601	lsm4	69	94.898	Cyprinodon_variegatus
ENSOGAG00000027992	LSM4	67	94.898	ENSDARG00000023852	lsm4	69	94.898	Danio_rerio
ENSOGAG00000027992	LSM4	60	98.851	ENSDORG00000024225	Lsm4	71	97.980	Dipodomys_ordii
ENSOGAG00000027992	LSM4	61	87.640	FBgn0032240	CG17768	58	87.640	Drosophila_melanogaster
ENSOGAG00000027992	LSM4	50	98.630	ENSETEG00000007762	-	69	97.647	Echinops_telfairi
ENSOGAG00000027992	LSM4	73	70.370	ENSEBUG00000003639	-	64	70.370	Eptatretus_burgeri
ENSOGAG00000027992	LSM4	90	83.206	ENSELUG00000012821	lsm4	74	95.918	Esox_lucius
ENSOGAG00000027992	LSM4	60	100.000	ENSFCAG00000040580	LSM4	71	98.990	Felis_catus
ENSOGAG00000027992	LSM4	90	80.153	ENSFALG00000009478	LSM4	72	97.000	Ficedula_albicollis
ENSOGAG00000027992	LSM4	60	100.000	ENSFDAG00000010124	LSM4	72	97.980	Fukomys_damarensis
ENSOGAG00000027992	LSM4	66	95.876	ENSGMOG00000007729	lsm4	67	94.949	Gadus_morhua
ENSOGAG00000027992	LSM4	89	80.000	ENSGALG00000003385	LSM4	72	96.970	Gallus_gallus
ENSOGAG00000027992	LSM4	75	82.114	ENSGAFG00000004903	lsm4	64	91.667	Gambusia_affinis
ENSOGAG00000027992	LSM4	64	96.809	ENSGACG00000008140	lsm4	65	95.918	Gasterosteus_aculeatus
ENSOGAG00000027992	LSM4	89	80.769	ENSGAGG00000017812	LSM4	72	96.970	Gopherus_agassizii
ENSOGAG00000027992	LSM4	60	100.000	ENSGGOG00000012914	-	99	75.000	Gorilla_gorilla
ENSOGAG00000027992	LSM4	67	95.918	ENSHBUG00000008858	lsm4	55	95.918	Haplochromis_burtoni
ENSOGAG00000027992	LSM4	89	93.846	ENSHGLG00000006568	LSM4	71	97.980	Heterocephalus_glaber_female
ENSOGAG00000027992	LSM4	64	98.925	ENSHGLG00100007894	LSM4	100	98.925	Heterocephalus_glaber_male
ENSOGAG00000027992	LSM4	99	73.103	ENSHCOG00000008819	lsm4	69	95.918	Hippocampus_comes
ENSOGAG00000027992	LSM4	67	95.918	ENSIPUG00000005368	Lsm4	69	95.918	Ictalurus_punctatus
ENSOGAG00000027992	LSM4	60	100.000	ENSSTOG00000016494	LSM4	71	98.990	Ictidomys_tridecemlineatus
ENSOGAG00000027992	LSM4	60	97.701	ENSJJAG00000017420	Lsm4	71	95.960	Jaculus_jaculus
ENSOGAG00000027992	LSM4	58	97.647	ENSKMAG00000005073	lsm4	68	94.898	Kryptolebias_marmoratus
ENSOGAG00000027992	LSM4	67	95.918	ENSLBEG00000027930	lsm4	66	95.918	Labrus_bergylta
ENSOGAG00000027992	LSM4	94	79.562	ENSLACG00000015861	LSM4	71	95.960	Latimeria_chalumnae
ENSOGAG00000027992	LSM4	87	83.465	ENSLOCG00000002025	lsm4	70	93.939	Lepisosteus_oculatus
ENSOGAG00000027992	LSM4	60	98.864	ENSLAFG00000017459	LSM4	72	98.000	Loxodonta_africana
ENSOGAG00000027992	LSM4	60	100.000	ENSMFAG00000031194	LSM4	99	72.857	Macaca_fascicularis
ENSOGAG00000027992	LSM4	60	100.000	ENSMMUG00000004405	LSM4	71	98.990	Macaca_mulatta
ENSOGAG00000027992	LSM4	60	100.000	ENSMNEG00000042899	LSM4	99	72.857	Macaca_nemestrina
ENSOGAG00000027992	LSM4	60	100.000	ENSMLEG00000027948	LSM4	99	75.000	Mandrillus_leucophaeus
ENSOGAG00000027992	LSM4	99	80.000	ENSMAMG00000006190	lsm4	69	95.918	Mastacembelus_armatus
ENSOGAG00000027992	LSM4	75	82.927	ENSMZEG00005016420	lsm4	67	95.918	Maylandia_zebra
ENSOGAG00000027992	LSM4	90	81.818	ENSMGAG00000004976	LSM4	72	97.000	Meleagris_gallopavo
ENSOGAG00000027992	LSM4	68	100.000	ENSMICG00000000222	LSM4	71	100.000	Microcebus_murinus
ENSOGAG00000027992	LSM4	60	96.552	ENSMOCG00000020861	Lsm4	71	94.949	Microtus_ochrogaster
ENSOGAG00000027992	LSM4	50	98.630	ENSMODG00000015044	-	69	96.471	Monodelphis_domestica
ENSOGAG00000027992	LSM4	99	72.414	ENSMALG00000018159	lsm4	69	94.898	Monopterus_albus
ENSOGAG00000027992	LSM4	60	96.552	MGP_CAROLIEiJ_G0031158	Lsm4	71	94.949	Mus_caroli
ENSOGAG00000027992	LSM4	60	96.552	ENSMUSG00000031848	Lsm4	96	88.889	Mus_musculus
ENSOGAG00000027992	LSM4	60	96.552	MGP_PahariEiJ_G0021623	Lsm4	71	94.949	Mus_pahari
ENSOGAG00000027992	LSM4	60	96.552	MGP_SPRETEiJ_G0032276	Lsm4	71	94.949	Mus_spretus
ENSOGAG00000027992	LSM4	60	100.000	ENSMPUG00000015589	LSM4	71	98.990	Mustela_putorius_furo
ENSOGAG00000027992	LSM4	60	100.000	ENSMLUG00000004010	LSM4	72	99.000	Myotis_lucifugus
ENSOGAG00000027992	LSM4	60	96.552	ENSNGAG00000008644	Lsm4	71	94.949	Nannospalax_galili
ENSOGAG00000027992	LSM4	68	95.960	ENSNBRG00000022150	lsm4	61	95.960	Neolamprologus_brichardi
ENSOGAG00000027992	LSM4	50	95.890	ENSMEUG00000013229	LSM4	69	94.118	Notamacropus_eugenii
ENSOGAG00000027992	LSM4	62	95.556	ENSOPRG00000005575	LSM4	71	97.647	Ochotona_princeps
ENSOGAG00000027992	LSM4	60	100.000	ENSODEG00000020549	-	71	97.980	Octodon_degus
ENSOGAG00000027992	LSM4	60	89.655	ENSODEG00000004519	-	72	87.879	Octodon_degus
ENSOGAG00000027992	LSM4	75	82.927	ENSONIG00000012724	lsm4	67	95.918	Oreochromis_niloticus
ENSOGAG00000027992	LSM4	60	93.478	ENSOANG00000007434	LSM4	90	92.308	Ornithorhynchus_anatinus
ENSOGAG00000027992	LSM4	75	82.114	ENSORLG00000008391	lsm4	68	94.898	Oryzias_latipes
ENSOGAG00000027992	LSM4	75	82.114	ENSORLG00020014829	lsm4	68	94.898	Oryzias_latipes_hni
ENSOGAG00000027992	LSM4	75	81.301	ENSORLG00015010205	lsm4	68	94.898	Oryzias_latipes_hsok
ENSOGAG00000027992	LSM4	75	82.114	ENSOMEG00000003606	lsm4	68	94.898	Oryzias_melastigma
ENSOGAG00000027992	LSM4	60	100.000	ENSOARG00000012553	LSM4	99	93.007	Ovis_aries
ENSOGAG00000027992	LSM4	60	100.000	ENSPPAG00000044045	-	71	98.990	Pan_paniscus
ENSOGAG00000027992	LSM4	60	100.000	ENSPPRG00000018264	LSM4	71	98.990	Panthera_pardus
ENSOGAG00000027992	LSM4	60	100.000	ENSPTIG00000006306	LSM4	72	98.990	Panthera_tigris_altaica
ENSOGAG00000027992	LSM4	60	100.000	ENSPTRG00000031470	LSM4	71	98.990	Pan_troglodytes
ENSOGAG00000027992	LSM4	75	99.083	ENSPANG00000014399	LSM4	99	75.000	Papio_anubis
ENSOGAG00000027992	LSM4	99	75.172	ENSPKIG00000006154	lsm4	70	93.939	Paramormyrops_kingsleyae
ENSOGAG00000027992	LSM4	89	80.000	ENSPSIG00000012358	LSM4	72	96.970	Pelodiscus_sinensis
ENSOGAG00000027992	LSM4	60	96.552	ENSPEMG00000001358	Lsm4	71	94.949	Peromyscus_maniculatus_bairdii
ENSOGAG00000027992	LSM4	75	82.927	ENSPFOG00000000570	lsm4	52	95.918	Poecilia_formosa
ENSOGAG00000027992	LSM4	92	80.000	ENSPLAG00000016267	lsm4	69	95.918	Poecilia_latipinna
ENSOGAG00000027992	LSM4	93	78.676	ENSPMEG00000016378	lsm4	70	95.876	Poecilia_mexicana
ENSOGAG00000027992	LSM4	67	95.918	ENSPREG00000011290	lsm4	52	95.918	Poecilia_reticulata
ENSOGAG00000027992	LSM4	60	100.000	ENSPPYG00000009736	LSM4	71	98.990	Pongo_abelii
ENSOGAG00000027992	LSM4	50	98.630	ENSPCAG00000008513	LSM4	69	97.647	Procavia_capensis
ENSOGAG00000027992	LSM4	68	100.000	ENSPCOG00000019837	LSM4	71	100.000	Propithecus_coquereli
ENSOGAG00000027992	LSM4	60	100.000	ENSPVAG00000015383	LSM4	71	98.990	Pteropus_vampyrus
ENSOGAG00000027992	LSM4	75	82.927	ENSPNYG00000016794	lsm4	67	95.918	Pundamilia_nyererei
ENSOGAG00000027992	LSM4	91	81.955	ENSPNAG00000016598	lsm4	73	95.918	Pygocentrus_nattereri
ENSOGAG00000027992	LSM4	60	96.552	ENSRNOG00000019572	Lsm4	71	94.949	Rattus_norvegicus
ENSOGAG00000027992	LSM4	60	100.000	ENSRBIG00000024717	LSM4	99	74.286	Rhinopithecus_bieti
ENSOGAG00000027992	LSM4	60	100.000	ENSRROG00000045706	LSM4	99	74.286	Rhinopithecus_roxellana
ENSOGAG00000027992	LSM4	56	40.217	YER112W	LSM4	51	38.542	Saccharomyces_cerevisiae
ENSOGAG00000027992	LSM4	51	100.000	ENSSBOG00000022455	LSM4	69	98.837	Saimiri_boliviensis_boliviensis
ENSOGAG00000027992	LSM4	60	98.851	ENSSHAG00000011559	LSM4	71	96.970	Sarcophilus_harrisii
ENSOGAG00000027992	LSM4	94	78.102	ENSSFOG00015021067	lsm4	70	93.939	Scleropages_formosus
ENSOGAG00000027992	LSM4	67	94.898	ENSSMAG00000021020	lsm4	65	94.898	Scophthalmus_maximus
ENSOGAG00000027992	LSM4	67	95.918	ENSSDUG00000009588	lsm4	59	95.918	Seriola_dumerili
ENSOGAG00000027992	LSM4	67	95.918	ENSSLDG00000006827	lsm4	58	95.918	Seriola_lalandi_dorsalis
ENSOGAG00000027992	LSM4	60	98.864	ENSSPUG00000010166	LSM4	65	97.000	Sphenodon_punctatus
ENSOGAG00000027992	LSM4	67	95.918	ENSSPAG00000011615	lsm4	65	95.918	Stegastes_partitus
ENSOGAG00000027992	LSM4	60	100.000	ENSSSCG00000034314	LSM4	71	98.990	Sus_scrofa
ENSOGAG00000027992	LSM4	99	79.310	ENSTRUG00000021737	lsm4	69	93.878	Takifugu_rubripes
ENSOGAG00000027992	LSM4	92	80.741	ENSTNIG00000010191	lsm4	68	94.898	Tetraodon_nigroviridis
ENSOGAG00000027992	LSM4	75	99.083	ENSUAMG00000000665	LSM4	90	99.083	Ursus_americanus
ENSOGAG00000027992	LSM4	60	100.000	ENSUMAG00000009013	LSM4	71	98.990	Ursus_maritimus
ENSOGAG00000027992	LSM4	60	98.864	ENSVVUG00000008136	LSM4	51	98.000	Vulpes_vulpes
ENSOGAG00000027992	LSM4	68	94.949	ENSXETG00000024933	lsm4	72	94.949	Xenopus_tropicalis
ENSOGAG00000027992	LSM4	75	82.114	ENSXMAG00000026672	lsm4	52	94.898	Xiphophorus_maculatus