EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000000816 (Gene tree)
Gene ID: 112139969
Gene Symbol: r3hcc1
Alias: -
Full Name: R3H domain and coiled-coil containing 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 8926 bases
Position: chrNVQA01004123.1:778711-787636
Accession: 112139969
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000006316	R3H	PF01424.22	4e-09	1	1
ENSOMEP00000006289	R3H	PF01424.22	1.8e-08	1	1
ENSOMEP00000006305	R3H	PF01424.22	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000006016	-	2192	XM_024262856	ENSOMEP00000006316	375 (aa)	XP_024118624	UPI000CF7BD5D
ENSOMET00000006058	-	1837	-	ENSOMEP00000006289	390 (aa)	XP_024118623	UPI000CF83543
ENSOMET00000006033	-	4036	-	ENSOMEP00000006305	395 (aa)	-	-
ENSOMET00000006117	-	645	-	ENSOMEP00000006261	214 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000000816's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000000816's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000000816	r3hcc1	99	32.908	ENSG00000104679	R3HCC1	93	33.010	Homo_sapiens
ENSOMEG00000000816	r3hcc1	99	49.745	ENSAPOG00000003616	r3hcc1	89	50.000	Acanthochromis_polyacanthus
ENSOMEG00000000816	r3hcc1	99	32.381	ENSAMEG00000002963	R3HCC1	85	32.692	Ailuropoda_melanoleuca
ENSOMEG00000000816	r3hcc1	100	45.116	ENSACIG00000017144	r3hcc1	95	45.116	Amphilophus_citrinellus
ENSOMEG00000000816	r3hcc1	99	49.618	ENSAOCG00000003945	r3hcc1	96	50.382	Amphiprion_ocellaris
ENSOMEG00000000816	r3hcc1	99	49.873	ENSAPEG00000003613	r3hcc1	96	50.127	Amphiprion_percula
ENSOMEG00000000816	r3hcc1	97	52.632	ENSATEG00000023860	r3hcc1	99	53.285	Anabas_testudineus
ENSOMEG00000000816	r3hcc1	98	31.742	ENSACAG00000016627	R3HCC1	91	34.719	Anolis_carolinensis
ENSOMEG00000000816	r3hcc1	99	31.971	ENSANAG00000036169	R3HCC1	92	31.662	Aotus_nancymaae
ENSOMEG00000000816	r3hcc1	99	33.729	ENSBTAG00000025830	R3HCC1	89	33.729	Bos_taurus
ENSOMEG00000000816	r3hcc1	99	30.423	ENSCJAG00000020118	R3HCC1	92	31.633	Callithrix_jacchus
ENSOMEG00000000816	r3hcc1	99	32.212	ENSCAFG00000009210	R3HCC1	88	33.816	Canis_familiaris
ENSOMEG00000000816	r3hcc1	80	31.884	ENSCAFG00020012870	R3HCC1	78	33.819	Canis_lupus_dingo
ENSOMEG00000000816	r3hcc1	99	32.558	ENSCHIG00000009107	R3HCC1	92	34.834	Capra_hircus
ENSOMEG00000000816	r3hcc1	97	33.171	ENSTSYG00000000511	R3HCC1	71	33.659	Carlito_syrichta
ENSOMEG00000000816	r3hcc1	92	30.679	ENSCAPG00000015813	R3HCC1	99	30.345	Cavia_aperea
ENSOMEG00000000816	r3hcc1	99	33.260	ENSCPOG00000009696	R3HCC1	94	33.260	Cavia_porcellus
ENSOMEG00000000816	r3hcc1	97	33.088	ENSCATG00000032971	R3HCC1	92	33.163	Cercocebus_atys
ENSOMEG00000000816	r3hcc1	99	34.834	ENSCLAG00000015556	R3HCC1	78	34.834	Chinchilla_lanigera
ENSOMEG00000000816	r3hcc1	99	31.116	ENSCSAG00000016250	R3HCC1	84	34.152	Chlorocebus_sabaeus
ENSOMEG00000000816	r3hcc1	99	33.175	ENSCHOG00000000396	R3HCC1	89	33.886	Choloepus_hoffmanni
ENSOMEG00000000816	r3hcc1	99	31.458	ENSCANG00000029441	R3HCC1	92	31.771	Colobus_angolensis_palliatus
ENSOMEG00000000816	r3hcc1	70	42.759	ENSCGRG00001014977	R3hcc1	59	40.994	Cricetulus_griseus_chok1gshd
ENSOMEG00000000816	r3hcc1	70	42.759	ENSCGRG00000004454	R3hcc1	59	40.994	Cricetulus_griseus_crigri
ENSOMEG00000000816	r3hcc1	100	49.380	ENSCSEG00000005748	r3hcc1	96	49.380	Cynoglossus_semilaevis
ENSOMEG00000000816	r3hcc1	82	47.761	ENSCVAG00000002640	r3hcc1	90	47.761	Cyprinodon_variegatus
ENSOMEG00000000816	r3hcc1	98	39.844	ENSDARG00000099593	r3hcc1	92	40.209	Danio_rerio
ENSOMEG00000000816	r3hcc1	99	31.754	ENSDNOG00000007168	R3HCC1	85	32.388	Dasypus_novemcinctus
ENSOMEG00000000816	r3hcc1	91	30.137	ENSDORG00000026365	R3hcc1	90	30.137	Dipodomys_ordii
ENSOMEG00000000816	r3hcc1	77	42.763	ENSEASG00005018782	R3HCC1	74	32.000	Equus_asinus_asinus
ENSOMEG00000000816	r3hcc1	77	42.763	ENSECAG00000025013	R3HCC1	90	34.293	Equus_caballus
ENSOMEG00000000816	r3hcc1	97	32.763	ENSEEUG00000011918	R3HCC1	88	33.007	Erinaceus_europaeus
ENSOMEG00000000816	r3hcc1	98	43.243	ENSELUG00000023650	r3hcc1	98	43.243	Esox_lucius
ENSOMEG00000000816	r3hcc1	99	35.000	ENSFCAG00000012395	R3HCC1	89	33.894	Felis_catus
ENSOMEG00000000816	r3hcc1	82	43.243	ENSFDAG00000001572	R3HCC1	93	32.243	Fukomys_damarensis
ENSOMEG00000000816	r3hcc1	96	39.782	ENSGMOG00000017590	-	91	38.919	Gadus_morhua
ENSOMEG00000000816	r3hcc1	100	54.430	ENSGAFG00000008747	-	93	54.331	Gambusia_affinis
ENSOMEG00000000816	r3hcc1	97	50.646	ENSGACG00000008447	r3hcc1	90	50.388	Gasterosteus_aculeatus
ENSOMEG00000000816	r3hcc1	88	40.741	ENSGAGG00000018009	R3HCC1	51	40.741	Gopherus_agassizii
ENSOMEG00000000816	r3hcc1	99	33.088	ENSGGOG00000013817	R3HCC1	93	34.314	Gorilla_gorilla
ENSOMEG00000000816	r3hcc1	71	78.723	ENSHBUG00000022250	-	75	78.723	Haplochromis_burtoni
ENSOMEG00000000816	r3hcc1	99	34.223	ENSHGLG00000010517	R3HCC1	86	33.095	Heterocephalus_glaber_female
ENSOMEG00000000816	r3hcc1	99	34.223	ENSHGLG00100006388	R3HCC1	86	33.095	Heterocephalus_glaber_male
ENSOMEG00000000816	r3hcc1	98	51.882	ENSHCOG00000011745	r3hcc1	88	50.660	Hippocampus_comes
ENSOMEG00000000816	r3hcc1	98	46.354	ENSIPUG00000024504	r3hcc1	82	45.573	Ictalurus_punctatus
ENSOMEG00000000816	r3hcc1	72	40.876	ENSSTOG00000027130	R3HCC1	59	40.876	Ictidomys_tridecemlineatus
ENSOMEG00000000816	r3hcc1	70	44.138	ENSJJAG00000013075	R3hcc1	92	32.019	Jaculus_jaculus
ENSOMEG00000000816	r3hcc1	100	51.654	ENSKMAG00000000286	r3hcc1	100	52.163	Kryptolebias_marmoratus
ENSOMEG00000000816	r3hcc1	98	32.598	ENSLACG00000011894	R3HCC1	92	31.863	Latimeria_chalumnae
ENSOMEG00000000816	r3hcc1	98	41.253	ENSLOCG00000015442	r3hcc1	96	41.253	Lepisosteus_oculatus
ENSOMEG00000000816	r3hcc1	78	41.104	ENSLAFG00000016137	R3HCC1	58	41.104	Loxodonta_africana
ENSOMEG00000000816	r3hcc1	97	32.048	ENSMFAG00000032894	R3HCC1	92	33.163	Macaca_fascicularis
ENSOMEG00000000816	r3hcc1	97	31.807	ENSMMUG00000016655	R3HCC1	92	32.908	Macaca_mulatta
ENSOMEG00000000816	r3hcc1	99	32.908	ENSMNEG00000043283	R3HCC1	92	32.908	Macaca_nemestrina
ENSOMEG00000000816	r3hcc1	97	31.807	ENSMLEG00000030147	R3HCC1	92	33.247	Mandrillus_leucophaeus
ENSOMEG00000000816	r3hcc1	100	50.985	ENSMAMG00000018146	r3hcc1	100	50.864	Mastacembelus_armatus
ENSOMEG00000000816	r3hcc1	97	32.080	ENSMGAG00000001356	R3HCC1	84	32.331	Meleagris_gallopavo
ENSOMEG00000000816	r3hcc1	69	43.972	ENSMAUG00000016096	R3hcc1	89	31.132	Mesocricetus_auratus
ENSOMEG00000000816	r3hcc1	99	33.976	ENSMICG00000011146	R3HCC1	92	32.812	Microcebus_murinus
ENSOMEG00000000816	r3hcc1	70	43.448	ENSMOCG00000018508	R3hcc1	60	40.719	Microtus_ochrogaster
ENSOMEG00000000816	r3hcc1	100	48.148	ENSMALG00000000731	r3hcc1	100	48.148	Monopterus_albus
ENSOMEG00000000816	r3hcc1	70	42.069	MGP_CAROLIEiJ_G0019467	R3hcc1	57	40.244	Mus_caroli
ENSOMEG00000000816	r3hcc1	81	42.069	ENSMUSG00000034194	R3hcc1	67	39.881	Mus_musculus
ENSOMEG00000000816	r3hcc1	71	40.268	MGP_PahariEiJ_G0030484	R3hcc1	58	39.157	Mus_pahari
ENSOMEG00000000816	r3hcc1	81	42.069	MGP_SPRETEiJ_G0020359	R3hcc1	66	39.881	Mus_spretus
ENSOMEG00000000816	r3hcc1	99	32.619	ENSMPUG00000003457	R3HCC1	81	33.174	Mustela_putorius_furo
ENSOMEG00000000816	r3hcc1	97	32.235	ENSMLUG00000000266	R3HCC1	84	33.492	Myotis_lucifugus
ENSOMEG00000000816	r3hcc1	69	43.972	ENSNGAG00000016747	R3hcc1	91	32.715	Nannospalax_galili
ENSOMEG00000000816	r3hcc1	82	83.333	ENSNBRG00000016975	-	76	83.333	Neolamprologus_brichardi
ENSOMEG00000000816	r3hcc1	90	30.667	ENSNLEG00000015944	R3HCC1	80	30.933	Nomascus_leucogenys
ENSOMEG00000000816	r3hcc1	99	31.643	ENSMEUG00000010587	R3HCC1	91	33.747	Notamacropus_eugenii
ENSOMEG00000000816	r3hcc1	99	35.891	ENSOPRG00000013390	R3HCC1	88	36.139	Ochotona_princeps
ENSOMEG00000000816	r3hcc1	99	34.607	ENSODEG00000007529	R3HCC1	93	34.607	Octodon_degus
ENSOMEG00000000816	r3hcc1	97	33.333	ENSOANG00000013877	R3HCC1	89	33.981	Ornithorhynchus_anatinus
ENSOMEG00000000816	r3hcc1	99	33.002	ENSOCUG00000023554	R3HCC1	79	33.747	Oryctolagus_cuniculus
ENSOMEG00000000816	r3hcc1	100	74.603	ENSORLG00000016816	r3hcc1	100	76.190	Oryzias_latipes
ENSOMEG00000000816	r3hcc1	100	74.074	ENSORLG00020012005	r3hcc1	100	75.661	Oryzias_latipes_hni
ENSOMEG00000000816	r3hcc1	100	74.603	ENSORLG00015007018	r3hcc1	100	76.190	Oryzias_latipes_hsok
ENSOMEG00000000816	r3hcc1	99	32.227	ENSOGAG00000001291	R3HCC1	85	33.413	Otolemur_garnettii
ENSOMEG00000000816	r3hcc1	99	33.652	ENSOARG00000010146	R3HCC1	90	34.204	Ovis_aries
ENSOMEG00000000816	r3hcc1	99	33.012	ENSPPAG00000033165	R3HCC1	93	33.252	Pan_paniscus
ENSOMEG00000000816	r3hcc1	99	32.992	ENSPPRG00000002522	R3HCC1	92	34.197	Panthera_pardus
ENSOMEG00000000816	r3hcc1	95	33.422	ENSPTIG00000011230	R3HCC1	94	33.167	Panthera_tigris_altaica
ENSOMEG00000000816	r3hcc1	99	31.981	ENSPTRG00000020076	R3HCC1	92	32.915	Pan_troglodytes
ENSOMEG00000000816	r3hcc1	97	31.807	ENSPANG00000000453	R3HCC1	92	33.075	Papio_anubis
ENSOMEG00000000816	r3hcc1	94	47.297	ENSPKIG00000020397	-	97	46.234	Paramormyrops_kingsleyae
ENSOMEG00000000816	r3hcc1	94	46.703	ENSPKIG00000014426	-	97	45.646	Paramormyrops_kingsleyae
ENSOMEG00000000816	r3hcc1	97	35.452	ENSPSIG00000017664	R3HCC1	90	35.452	Pelodiscus_sinensis
ENSOMEG00000000816	r3hcc1	54	58.696	ENSPMGG00000007792	r3hcc1	93	35.749	Periophthalmus_magnuspinnatus
ENSOMEG00000000816	r3hcc1	79	39.823	ENSPEMG00000007118	R3hcc1	64	37.795	Peromyscus_maniculatus_bairdii
ENSOMEG00000000816	r3hcc1	67	40.741	ENSPCIG00000022718	-	82	30.597	Phascolarctos_cinereus
ENSOMEG00000000816	r3hcc1	100	54.430	ENSPFOG00000022301	r3hcc1	87	54.430	Poecilia_formosa
ENSOMEG00000000816	r3hcc1	100	54.177	ENSPLAG00000010794	r3hcc1	87	54.177	Poecilia_latipinna
ENSOMEG00000000816	r3hcc1	100	54.430	ENSPMEG00000022515	r3hcc1	87	54.430	Poecilia_mexicana
ENSOMEG00000000816	r3hcc1	100	52.152	ENSPREG00000000713	r3hcc1	87	52.152	Poecilia_reticulata
ENSOMEG00000000816	r3hcc1	96	30.093	ENSPPYG00000018436	R3HCC1	97	33.085	Pongo_abelii
ENSOMEG00000000816	r3hcc1	71	42.568	ENSPCAG00000012229	R3HCC1	59	42.568	Procavia_capensis
ENSOMEG00000000816	r3hcc1	99	33.735	ENSPCOG00000027554	R3HCC1	93	34.458	Propithecus_coquereli
ENSOMEG00000000816	r3hcc1	99	32.452	ENSPVAG00000009829	R3HCC1	89	32.692	Pteropus_vampyrus
ENSOMEG00000000816	r3hcc1	96	41.667	ENSPNAG00000023875	r3hcc1	94	41.444	Pygocentrus_nattereri
ENSOMEG00000000816	r3hcc1	85	40.491	ENSRNOG00000016777	AABR07018321.1	58	40.120	Rattus_norvegicus
ENSOMEG00000000816	r3hcc1	99	31.754	ENSRBIG00000028045	R3HCC1	93	33.654	Rhinopithecus_bieti
ENSOMEG00000000816	r3hcc1	97	32.048	ENSRROG00000031126	R3HCC1	92	32.398	Rhinopithecus_roxellana
ENSOMEG00000000816	r3hcc1	99	30.969	ENSSBOG00000022590	R3HCC1	93	31.840	Saimiri_boliviensis_boliviensis
ENSOMEG00000000816	r3hcc1	53	55.357	ENSSHAG00000016526	-	52	42.424	Sarcophilus_harrisii
ENSOMEG00000000816	r3hcc1	97	43.478	ENSSFOG00015013507	r3hcc1	97	43.333	Scleropages_formosus
ENSOMEG00000000816	r3hcc1	100	52.709	ENSSMAG00000008647	r3hcc1	100	52.709	Scophthalmus_maximus
ENSOMEG00000000816	r3hcc1	100	53.448	ENSSDUG00000022786	r3hcc1	94	54.680	Seriola_dumerili
ENSOMEG00000000816	r3hcc1	100	53.941	ENSSLDG00000019031	r3hcc1	94	55.172	Seriola_lalandi_dorsalis
ENSOMEG00000000816	r3hcc1	99	51.768	ENSSPAG00000013497	r3hcc1	96	51.768	Stegastes_partitus
ENSOMEG00000000816	r3hcc1	91	30.175	ENSSSCG00000037347	-	83	30.952	Sus_scrofa
ENSOMEG00000000816	r3hcc1	99	33.492	ENSSSCG00000039915	-	90	34.963	Sus_scrofa
ENSOMEG00000000816	r3hcc1	100	44.675	ENSTRUG00000015880	r3hcc1	95	44.675	Takifugu_rubripes
ENSOMEG00000000816	r3hcc1	96	30.569	ENSTTRG00000012247	R3HCC1	89	32.930	Tursiops_truncatus
ENSOMEG00000000816	r3hcc1	72	42.308	ENSUAMG00000007344	R3HCC1	92	33.649	Ursus_americanus
ENSOMEG00000000816	r3hcc1	99	32.212	ENSVVUG00000005056	R3HCC1	88	33.575	Vulpes_vulpes
ENSOMEG00000000816	r3hcc1	97	50.262	ENSXCOG00000017626	r3hcc1	86	50.521	Xiphophorus_couchianus
ENSOMEG00000000816	r3hcc1	100	52.778	ENSXMAG00000018375	r3hcc1	93	54.167	Xiphophorus_maculatus