EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSOMEG00000001078 (Gene tree)
Gene ID
112151242
Gene Symbol
lsm5
Alias
-
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Oryzias_melastigma
Status
putative
Strand
Minus strand
Length
4114 bases
Position
chrNVQA01000015.1:21097177-21101290
Accession
112151242
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSOMEP00000000194LSMPF01423.225.1e-2011
ENSOMEP00000000195LSMPF01423.228e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSOMET00000016248-2839-ENSOMEP0000000019491 (aa)XP_024135806UPI000CF8372B
ENSOMET00000016249-2893-ENSOMEP00000000195109 (aa)--
Gene Model
Click here to download ENSOMEG00000001078's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000001078's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSOMEG00000001078lsm59633.333ENSOMEG00000001915lsm38533.333
ENSOMEG00000001078lsm58630.952ENSOMEG00000001093snrpe8930.952
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSOMEG00000001078lsm510092.308ENSG00000106355LSM510095.161Homo_sapiens
ENSOMEG00000001078lsm59096.341ENSAPOG00000011743LSM510098.387Acanthochromis_polyacanthus
ENSOMEG00000001078lsm510096.703ENSAPOG00000020779LSM510097.647Acanthochromis_polyacanthus
ENSOMEG00000001078lsm510092.308ENSAMEG00000006700LSM510092.308Ailuropoda_melanoleuca
ENSOMEG00000001078lsm510096.703ENSAOCG00000001636lsm510096.703Amphiprion_ocellaris
ENSOMEG00000001078lsm56898.387ENSAPEG00000008201lsm510098.387Amphiprion_percula
ENSOMEG00000001078lsm510096.703ENSAPEG00000008151lsm510096.703Amphiprion_percula
ENSOMEG00000001078lsm59095.122ENSATEG00000020470lsm57693.333Anabas_testudineus
ENSOMEG00000001078lsm58197.297ENSAPLG00000008171LSM510097.297Anas_platyrhynchos
ENSOMEG00000001078lsm56291.071ENSACAG00000009530LSM59391.071Anolis_carolinensis
ENSOMEG00000001078lsm510092.308ENSANAG00000034409-10092.308Aotus_nancymaae
ENSOMEG00000001078lsm59988.889ENSANAG00000024192-9488.889Aotus_nancymaae
ENSOMEG00000001078lsm510071.429ENSANAG00000037758-10071.429Aotus_nancymaae
ENSOMEG00000001078lsm510094.505ENSACLG00000012891lsm510094.505Astatotilapia_calliptera
ENSOMEG00000001078lsm510082.979ENSAMXG00000035543lsm510082.979Astyanax_mexicanus
ENSOMEG00000001078lsm510092.308ENSBTAG00000002332LSM510092.308Bos_taurus
ENSOMEG00000001078lsm55372.917ENSBTAG00000052014-6372.917Bos_taurus
ENSOMEG00000001078lsm510070.330WBGene00003079lsm-510070.330Caenorhabditis_elegans
ENSOMEG00000001078lsm510092.308ENSCJAG00000047379LSM58182.692Callithrix_jacchus
ENSOMEG00000001078lsm59980.000ENSCJAG00000005678-10080.000Callithrix_jacchus
ENSOMEG00000001078lsm55584.000ENSCAFG00000030781-5884.000Canis_familiaris
ENSOMEG00000001078lsm510091.209ENSCAFG00000019261-10091.209Canis_familiaris
ENSOMEG00000001078lsm510092.308ENSCAFG00020004946LSM510092.308Canis_lupus_dingo
ENSOMEG00000001078lsm58172.973ENSCHIG00000021428-9570.455Capra_hircus
ENSOMEG00000001078lsm510090.110ENSCHIG00000004079-10090.110Capra_hircus
ENSOMEG00000001078lsm510092.308ENSCHIG00000024539LSM510092.308Capra_hircus
ENSOMEG00000001078lsm510092.308ENSTSYG00000006449-10092.308Carlito_syrichta
ENSOMEG00000001078lsm510067.033ENSTSYG00000036637-10067.033Carlito_syrichta
ENSOMEG00000001078lsm510074.725ENSTSYG00000026530-9174.725Carlito_syrichta
ENSOMEG00000001078lsm510080.220ENSTSYG00000028728-10080.220Carlito_syrichta
ENSOMEG00000001078lsm58289.333ENSCAPG00000006980LSM510089.333Cavia_aperea
ENSOMEG00000001078lsm510092.308ENSCPOG00000036386LSM510092.308Cavia_porcellus
ENSOMEG00000001078lsm510090.110ENSCCAG00000032123-10090.110Cebus_capucinus
ENSOMEG00000001078lsm510073.626ENSCCAG00000032792-10073.626Cebus_capucinus
ENSOMEG00000001078lsm510091.209ENSCCAG00000000821-10091.209Cebus_capucinus
ENSOMEG00000001078lsm510062.637ENSCCAG00000037334-8875.000Cebus_capucinus
ENSOMEG00000001078lsm510092.308ENSCCAG00000037808-10092.308Cebus_capucinus
ENSOMEG00000001078lsm59981.111ENSCATG00000014790-9589.091Cercocebus_atys
ENSOMEG00000001078lsm510092.308ENSCATG00000040218LSM510095.161Cercocebus_atys
ENSOMEG00000001078lsm510078.022ENSCLAG00000005062-9078.022Chinchilla_lanigera
ENSOMEG00000001078lsm510092.308ENSCLAG00000000202LSM510092.308Chinchilla_lanigera
ENSOMEG00000001078lsm58293.333ENSCHOG00000005335LSM59993.333Choloepus_hoffmanni
ENSOMEG00000001078lsm510092.308ENSCPBG00000013685LSM510092.308Chrysemys_picta_bellii
ENSOMEG00000001078lsm59782.955ENSCING00000020625-9982.955Ciona_intestinalis
ENSOMEG00000001078lsm59584.884ENSCSAVG00000001439-9884.884Ciona_savignyi
ENSOMEG00000001078lsm510092.308ENSCANG00000039909LSM510095.161Colobus_angolensis_palliatus
ENSOMEG00000001078lsm510092.308ENSCGRG00001015461Lsm510092.308Cricetulus_griseus_chok1gshd
ENSOMEG00000001078lsm58296.000ENSCGRG00000007677Lsm510096.000Cricetulus_griseus_crigri
ENSOMEG00000001078lsm510059.341ENSCSEG00000015286lsm57693.333Cynoglossus_semilaevis
ENSOMEG00000001078lsm510095.604ENSCVAG00000004262lsm510095.604Cyprinodon_variegatus
ENSOMEG00000001078lsm510093.407ENSDARG00000071573lsm510096.774Danio_rerio
ENSOMEG00000001078lsm59682.759ENSDNOG00000049495-9682.759Dasypus_novemcinctus
ENSOMEG00000001078lsm510092.308ENSDNOG00000034958LSM510092.308Dasypus_novemcinctus
ENSOMEG00000001078lsm510092.308ENSDORG00000009422Lsm510092.308Dipodomys_ordii
ENSOMEG00000001078lsm59581.395FBgn0035675CG66109581.395Drosophila_melanogaster
ENSOMEG00000001078lsm59861.798ENSETEG00000000777-9961.798Echinops_telfairi
ENSOMEG00000001078lsm59971.111ENSETEG00000001469-9971.111Echinops_telfairi
ENSOMEG00000001078lsm510092.308ENSETEG00000018068LSM510092.308Echinops_telfairi
ENSOMEG00000001078lsm59874.157ENSETEG00000010651-9974.157Echinops_telfairi
ENSOMEG00000001078lsm58177.027ENSETEG00000016074-9877.027Echinops_telfairi
ENSOMEG00000001078lsm510092.308ENSEBUG00000008540lsm510092.308Eptatretus_burgeri
ENSOMEG00000001078lsm510092.308ENSEASG00005003500LSM510092.308Equus_asinus_asinus
ENSOMEG00000001078lsm510078.022ENSECAG00000018445LSM510078.022Equus_caballus
ENSOMEG00000001078lsm56391.228ENSEEUG00000004102LSM59591.228Erinaceus_europaeus
ENSOMEG00000001078lsm510094.505ENSELUG00000007792lsm510094.505Esox_lucius
ENSOMEG00000001078lsm510092.308ENSFCAG00000000230LSM510092.308Felis_catus
ENSOMEG00000001078lsm58496.053ENSFALG00000001892LSM59296.053Ficedula_albicollis
ENSOMEG00000001078lsm510092.308ENSFDAG00000008767LSM510092.308Fukomys_damarensis
ENSOMEG00000001078lsm59067.073ENSFDAG00000008685-9767.073Fukomys_damarensis
ENSOMEG00000001078lsm510075.000ENSFHEG00000004011lsm510075.000Fundulus_heteroclitus
ENSOMEG00000001078lsm59995.556ENSGMOG00000018235lsm510095.556Gadus_morhua
ENSOMEG00000001078lsm510092.308ENSGALG00000041625LSM510092.308Gallus_gallus
ENSOMEG00000001078lsm56898.387ENSGAFG00000016824lsm510098.387Gambusia_affinis
ENSOMEG00000001078lsm510095.604ENSGACG00000005528lsm510095.604Gasterosteus_aculeatus
ENSOMEG00000001078lsm510092.308ENSGAGG00000015593LSM510092.308Gopherus_agassizii
ENSOMEG00000001078lsm510092.308ENSGGOG00000043469LSM510092.308Gorilla_gorilla
ENSOMEG00000001078lsm510094.505ENSHBUG00000013773lsm510094.505Haplochromis_burtoni
ENSOMEG00000001078lsm510092.308ENSHGLG00000011765LSM510092.308Heterocephalus_glaber_female
ENSOMEG00000001078lsm510089.011ENSHGLG00100015610LSM510089.011Heterocephalus_glaber_male
ENSOMEG00000001078lsm510058.242ENSHCOG00000008288lsm57691.111Hippocampus_comes
ENSOMEG00000001078lsm510095.604ENSIPUG00000021095LSM510095.604Ictalurus_punctatus
ENSOMEG00000001078lsm59279.070ENSSTOG00000033886-9779.070Ictidomys_tridecemlineatus
ENSOMEG00000001078lsm510092.308ENSSTOG00000012662LSM510092.308Ictidomys_tridecemlineatus
ENSOMEG00000001078lsm58786.076ENSJJAG00000004475-10086.076Jaculus_jaculus
ENSOMEG00000001078lsm510090.110ENSJJAG00000012145-10090.110Jaculus_jaculus
ENSOMEG00000001078lsm510067.033ENSJJAG00000016144-9267.033Jaculus_jaculus
ENSOMEG00000001078lsm510095.604ENSKMAG00000021861lsm510095.604Kryptolebias_marmoratus
ENSOMEG00000001078lsm59095.122ENSLBEG00000009235LSM56595.122Labrus_bergylta
ENSOMEG00000001078lsm56282.143ENSLBEG00000017379lsm59282.143Labrus_bergylta
ENSOMEG00000001078lsm510094.505ENSLACG00000022448LSM510094.505Latimeria_chalumnae
ENSOMEG00000001078lsm510093.407ENSLOCG00000012903lsm510093.407Lepisosteus_oculatus
ENSOMEG00000001078lsm510069.231ENSLAFG00000027938-10069.231Loxodonta_africana
ENSOMEG00000001078lsm510092.308ENSLAFG00000029579LSM510092.308Loxodonta_africana
ENSOMEG00000001078lsm510092.308ENSMFAG00000038508LSM510092.308Macaca_fascicularis
ENSOMEG00000001078lsm55387.500ENSMFAG00000031187-8187.500Macaca_fascicularis
ENSOMEG00000001078lsm510090.110ENSMFAG00000030152-10090.110Macaca_fascicularis
ENSOMEG00000001078lsm55782.692ENSMMUG00000045129-8182.692Macaca_mulatta
ENSOMEG00000001078lsm59982.222ENSMMUG00000039822-10082.222Macaca_mulatta
ENSOMEG00000001078lsm510090.110ENSMMUG00000030131-10090.110Macaca_mulatta
ENSOMEG00000001078lsm510090.110ENSMNEG00000037935-10090.110Macaca_nemestrina
ENSOMEG00000001078lsm510092.308ENSMNEG00000015331LSM510095.161Macaca_nemestrina
ENSOMEG00000001078lsm59880.899ENSMLEG00000034037-10080.899Mandrillus_leucophaeus
ENSOMEG00000001078lsm510092.308ENSMLEG00000024945LSM510092.308Mandrillus_leucophaeus
ENSOMEG00000001078lsm510090.110ENSMAMG00000012869lsm510090.110Mastacembelus_armatus
ENSOMEG00000001078lsm510094.505ENSMZEG00005019554lsm510094.505Maylandia_zebra
ENSOMEG00000001078lsm510092.308ENSMGAG00000012117LSM510092.308Meleagris_gallopavo
ENSOMEG00000001078lsm510092.308ENSMAUG00000012222Lsm510092.308Mesocricetus_auratus
ENSOMEG00000001078lsm510091.209ENSMAUG00000008132-10091.209Mesocricetus_auratus
ENSOMEG00000001078lsm59971.111ENSMICG00000033928-7794.915Microcebus_murinus
ENSOMEG00000001078lsm510092.308ENSMICG00000005353LSM510092.308Microcebus_murinus
ENSOMEG00000001078lsm510092.308ENSMOCG00000012018Lsm510092.308Microtus_ochrogaster
ENSOMEG00000001078lsm58498.684ENSMMOG00000004026lsm59197.468Mola_mola
ENSOMEG00000001078lsm56895.161ENSMODG00000013274-10095.161Monodelphis_domestica
ENSOMEG00000001078lsm56895.161ENSMALG00000010343lsm510095.161Monopterus_albus
ENSOMEG00000001078lsm510092.308MGP_CAROLIEiJ_G0028421Lsm510092.308Mus_caroli
ENSOMEG00000001078lsm510092.308ENSMUSG00000091625Lsm510092.308Mus_musculus
ENSOMEG00000001078lsm510092.308MGP_PahariEiJ_G0022171Lsm510092.308Mus_pahari
ENSOMEG00000001078lsm510092.308MGP_SPRETEiJ_G0029423Lsm510092.308Mus_spretus
ENSOMEG00000001078lsm510092.308ENSMLUG00000017028LSM510092.308Myotis_lucifugus
ENSOMEG00000001078lsm59972.222ENSNGAG00000022569-9672.222Nannospalax_galili
ENSOMEG00000001078lsm510092.308ENSNGAG00000024142Lsm510092.308Nannospalax_galili
ENSOMEG00000001078lsm510080.645ENSNGAG00000017707-10080.645Nannospalax_galili
ENSOMEG00000001078lsm56396.491ENSNBRG00000011386lsm57696.491Neolamprologus_brichardi
ENSOMEG00000001078lsm510092.308ENSNLEG00000015268LSM510092.308Nomascus_leucogenys
ENSOMEG00000001078lsm58296.000ENSOPRG00000002443LSM510096.000Ochotona_princeps
ENSOMEG00000001078lsm510092.308ENSODEG00000019072-10092.308Octodon_degus
ENSOMEG00000001078lsm510092.308ENSODEG00000008258-10092.308Octodon_degus
ENSOMEG00000001078lsm58260.000ENSOANG00000014540-10060.000Ornithorhynchus_anatinus
ENSOMEG00000001078lsm510092.308ENSOCUG00000029043LSM510092.308Oryctolagus_cuniculus
ENSOMEG00000001078lsm510098.901ENSORLG00000027725lsm55898.901Oryzias_latipes
ENSOMEG00000001078lsm59793.182ENSORLG00020003019lsm59591.209Oryzias_latipes_hni
ENSOMEG00000001078lsm510098.901ENSORLG00015003338lsm510098.901Oryzias_latipes_hsok
ENSOMEG00000001078lsm510092.308ENSOGAG00000013892LSM510092.308Otolemur_garnettii
ENSOMEG00000001078lsm510092.308ENSOARG00000006944LSM510092.308Ovis_aries
ENSOMEG00000001078lsm510092.308ENSPPAG00000003697-10092.308Pan_paniscus
ENSOMEG00000001078lsm510092.308ENSPPRG00000002550LSM510092.308Panthera_pardus
ENSOMEG00000001078lsm510092.308ENSPTIG00000015604LSM510092.308Panthera_tigris_altaica
ENSOMEG00000001078lsm510092.308ENSPTRG00000019057LSM510092.308Pan_troglodytes
ENSOMEG00000001078lsm510075.824ENSPTRG00000049488-10078.022Pan_troglodytes
ENSOMEG00000001078lsm510092.308ENSPANG00000032179-10092.308Papio_anubis
ENSOMEG00000001078lsm59982.222ENSPANG00000032538-10082.222Papio_anubis
ENSOMEG00000001078lsm510089.011ENSPANG00000033477-10089.011Papio_anubis
ENSOMEG00000001078lsm510095.604ENSPKIG00000011910lsm510095.604Paramormyrops_kingsleyae
ENSOMEG00000001078lsm58197.297ENSPSIG00000014796LSM510097.297Pelodiscus_sinensis
ENSOMEG00000001078lsm56898.387ENSPMGG00000011699lsm510098.387Periophthalmus_magnuspinnatus
ENSOMEG00000001078lsm55289.362ENSPEMG00000019994-8089.362Peromyscus_maniculatus_bairdii
ENSOMEG00000001078lsm510065.934ENSPEMG00000022375-10065.934Peromyscus_maniculatus_bairdii
ENSOMEG00000001078lsm510095.604ENSPFOG00000001433lsm510095.604Poecilia_formosa
ENSOMEG00000001078lsm510095.604ENSPLAG00000009665lsm510095.604Poecilia_latipinna
ENSOMEG00000001078lsm510095.604ENSPMEG00000022265lsm510095.604Poecilia_mexicana
ENSOMEG00000001078lsm56898.387ENSPREG00000022452lsm510098.387Poecilia_reticulata
ENSOMEG00000001078lsm510089.011ENSPPYG00000017661LSM510089.011Pongo_abelii
ENSOMEG00000001078lsm58993.827ENSPCAG00000013740LSM510093.827Procavia_capensis
ENSOMEG00000001078lsm510092.308ENSPVAG00000009786LSM510092.308Pteropus_vampyrus
ENSOMEG00000001078lsm510094.505ENSPNYG00000022236lsm510094.505Pundamilia_nyererei
ENSOMEG00000001078lsm510095.604ENSPNAG00000001887lsm510095.604Pygocentrus_nattereri
ENSOMEG00000001078lsm510092.308ENSRNOG00000042126Lsm510092.308Rattus_norvegicus
ENSOMEG00000001078lsm510089.130ENSRNOG00000027305AABR07065089.110089.130Rattus_norvegicus
ENSOMEG00000001078lsm510092.308ENSRBIG00000030340-10092.308Rhinopithecus_bieti
ENSOMEG00000001078lsm510092.308ENSRBIG00000030714-10092.308Rhinopithecus_bieti
ENSOMEG00000001078lsm510091.209ENSRBIG00000024431-10091.209Rhinopithecus_bieti
ENSOMEG00000001078lsm510092.308ENSRBIG00000027803-10095.161Rhinopithecus_bieti
ENSOMEG00000001078lsm510092.308ENSRROG00000042782-10095.161Rhinopithecus_roxellana
ENSOMEG00000001078lsm510092.308ENSRROG00000023884-10092.308Rhinopithecus_roxellana
ENSOMEG00000001078lsm510092.308ENSRROG00000004655-10092.308Rhinopithecus_roxellana
ENSOMEG00000001078lsm58548.780YER146W-8848.780Saccharomyces_cerevisiae
ENSOMEG00000001078lsm510092.308ENSSBOG00000012312LSM510092.308Saimiri_boliviensis_boliviensis
ENSOMEG00000001078lsm510070.330ENSSBOG00000034794-10070.330Saimiri_boliviensis_boliviensis
ENSOMEG00000001078lsm510090.110ENSSBOG00000019124-10090.110Saimiri_boliviensis_boliviensis
ENSOMEG00000001078lsm510095.604ENSSFOG00015010099lsm510095.604Scleropages_formosus
ENSOMEG00000001078lsm510059.341ENSSMAG00000007895lsm57693.333Scophthalmus_maximus
ENSOMEG00000001078lsm56898.387ENSSDUG00000010762lsm510098.387Seriola_dumerili
ENSOMEG00000001078lsm58676.923ENSSLDG00000008014-9376.923Seriola_lalandi_dorsalis
ENSOMEG00000001078lsm510096.703ENSSLDG00000025242lsm510096.703Seriola_lalandi_dorsalis
ENSOMEG00000001078lsm510063.736ENSSARG00000003330LSM510063.736Sorex_araneus
ENSOMEG00000001078lsm510090.110ENSSPUG00000002690LSM510093.548Sphenodon_punctatus
ENSOMEG00000001078lsm510060.440ENSSPAG00000005435lsm57693.333Stegastes_partitus
ENSOMEG00000001078lsm510092.308ENSSSCG00000026064-10092.308Sus_scrofa
ENSOMEG00000001078lsm57682.609ENSSSCG00000029661-9682.609Sus_scrofa
ENSOMEG00000001078lsm510093.407ENSTGUG00000017539LSM510093.407Taeniopygia_guttata
ENSOMEG00000001078lsm59087.356ENSTRUG00000017749lsm56587.356Takifugu_rubripes
ENSOMEG00000001078lsm510094.505ENSTNIG00000008695lsm510094.505Tetraodon_nigroviridis
ENSOMEG00000001078lsm510092.308ENSTBEG00000004876LSM510092.308Tupaia_belangeri
ENSOMEG00000001078lsm510092.308ENSTTRG00000004237LSM510092.308Tursiops_truncatus
ENSOMEG00000001078lsm55782.692ENSUAMG00000009786LSM56882.692Ursus_americanus
ENSOMEG00000001078lsm510091.209ENSUMAG00000002625LSM56591.209Ursus_maritimus
ENSOMEG00000001078lsm510092.308ENSVPAG00000009985LSM510092.308Vicugna_pacos
ENSOMEG00000001078lsm510092.308ENSVVUG00000021311LSM510092.308Vulpes_vulpes
ENSOMEG00000001078lsm59093.902ENSXETG00000026465lsm510093.902Xenopus_tropicalis
ENSOMEG00000001078lsm56898.387ENSXCOG00000015348lsm510098.387Xiphophorus_couchianus
ENSOMEG00000001078lsm510095.604ENSXMAG00000029988lsm510095.604Xiphophorus_maculatus

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