EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSOMEG00000001643 (Gene tree)
Gene ID
112151093
Gene Symbol
puf60b
Alias
-
Full Name
poly-U binding splicing factor b
Gene Type
protein_coding
Species
Oryzias_melastigma
Status
putative
Strand
Plus strand
Length
13009 bases
Position
chrNVQA01000015.1:18196029-18209037
Accession
ZDB-GENE-040625-116
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSOMEP00000022176RRM_1PF00076.226.1e-4412
ENSOMEP00000022176RRM_1PF00076.226.1e-4422
ENSOMEP00000000701RRM_1PF00076.226.5e-4412
ENSOMEP00000000701RRM_1PF00076.226.5e-4422
ENSOMEP00000022181RRM_1PF00076.229.7e-4412
ENSOMEP00000022181RRM_1PF00076.229.7e-4422
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSOMET00000015420-1452-ENSOMEP00000022176483 (aa)--
ENSOMET00000015424-1452-ENSOMEP00000000701483 (aa)--
ENSOMET00000015406-1614-ENSOMEP00000022181537 (aa)--
Gene Model
Click here to download ENSOMEG00000001643's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000001643's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSOMEG00000001643puf60b6037.255ENSOMEG00000011386u2af2a6939.216
ENSOMEG00000001643puf60b9980.972ENSOMEG00000022185-9978.253
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSOMEG00000001643puf60b9983.030ENSG00000179950PUF6010082.895Homo_sapiens
ENSOMEG00000001643puf60b10094.413ENSAPOG00000001713puf60b10094.413Acanthochromis_polyacanthus
ENSOMEG00000001643puf60b9981.010ENSAMEG00000006406PUF609380.483Ailuropoda_melanoleuca
ENSOMEG00000001643puf60b10077.273ENSACIG00000003263-9977.686Amphilophus_citrinellus
ENSOMEG00000001643puf60b9994.456ENSACIG00000021705puf60b10094.656Amphilophus_citrinellus
ENSOMEG00000001643puf60b10094.413ENSAOCG00000005395puf60b10094.656Amphiprion_ocellaris
ENSOMEG00000001643puf60b9982.377ENSAOCG00000015558-10081.784Amphiprion_ocellaris
ENSOMEG00000001643puf60b10091.331ENSAPEG00000011923puf60b9791.331Amphiprion_percula
ENSOMEG00000001643puf60b10078.528ENSAPEG00000001836-9979.472Amphiprion_percula
ENSOMEG00000001643puf60b10094.413ENSATEG00000001730puf60b10094.413Anabas_testudineus
ENSOMEG00000001643puf60b9980.943ENSATEG00000006303-10079.926Anabas_testudineus
ENSOMEG00000001643puf60b9983.434ENSAPLG00000010150PUF6010083.271Anas_platyrhynchos
ENSOMEG00000001643puf60b9982.731ENSACAG00000001645PUF609782.276Anolis_carolinensis
ENSOMEG00000001643puf60b9982.828ENSANAG00000018626PUF6010082.707Aotus_nancymaae
ENSOMEG00000001643puf60b10093.750ENSACLG00000004462puf60b10094.656Astatotilapia_calliptera
ENSOMEG00000001643puf60b10085.341ENSAMXG00000036570puf60a10084.375Astyanax_mexicanus
ENSOMEG00000001643puf60b10080.716ENSAMXG00000041030puf60b10081.113Astyanax_mexicanus
ENSOMEG00000001643puf60b10082.341ENSBTAG00000037493PUF609982.714Bos_taurus
ENSOMEG00000001643puf60b9046.400WBGene00004389rnp-68354.704Caenorhabditis_elegans
ENSOMEG00000001643puf60b9983.030ENSCJAG00000021485PUF609882.342Callithrix_jacchus
ENSOMEG00000001643puf60b10082.143ENSCAFG00000001400PUF609381.970Canis_familiaris
ENSOMEG00000001643puf60b9983.232ENSCAFG00020018754PUF609882.528Canis_lupus_dingo
ENSOMEG00000001643puf60b9983.232ENSCHIG00000001618PUF608782.528Capra_hircus
ENSOMEG00000001643puf60b9983.232ENSTSYG00000011912PUF6010083.083Carlito_syrichta
ENSOMEG00000001643puf60b10077.165ENSCPOG00000014613PUF609477.675Cavia_porcellus
ENSOMEG00000001643puf60b9983.030ENSCCAG00000007744PUF609882.528Cebus_capucinus
ENSOMEG00000001643puf60b9983.030ENSCATG00000035405PUF609882.342Cercocebus_atys
ENSOMEG00000001643puf60b9983.232ENSCLAG00000009154PUF609382.342Chinchilla_lanigera
ENSOMEG00000001643puf60b9983.030ENSCSAG00000008878PUF6010082.895Chlorocebus_sabaeus
ENSOMEG00000001643puf60b9983.434ENSCPBG00000005595PUF609982.505Chrysemys_picta_bellii
ENSOMEG00000001643puf60b6362.857ENSCING00000002156-8662.857Ciona_intestinalis
ENSOMEG00000001643puf60b9947.593ENSCING00000008436-9947.407Ciona_intestinalis
ENSOMEG00000001643puf60b9952.157ENSCSAVG00000001385-9953.030Ciona_savignyi
ENSOMEG00000001643puf60b9946.201ENSCSAVG00000004765-9747.708Ciona_savignyi
ENSOMEG00000001643puf60b8082.741ENSCANG00000041843PUF6010081.755Colobus_angolensis_palliatus
ENSOMEG00000001643puf60b10082.341ENSCGRG00001017442Puf609382.528Cricetulus_griseus_chok1gshd
ENSOMEG00000001643puf60b9983.232ENSCGRG00000003717Puf609382.528Cricetulus_griseus_crigri
ENSOMEG00000001643puf60b10078.156ENSCSEG00000014845-8979.234Cynoglossus_semilaevis
ENSOMEG00000001643puf60b9994.661ENSCSEG00000019887puf60b9494.403Cynoglossus_semilaevis
ENSOMEG00000001643puf60b10094.153ENSCVAG00000009386puf60b10094.847Cyprinodon_variegatus
ENSOMEG00000001643puf60b9580.128ENSCVAG00000001560-9880.128Cyprinodon_variegatus
ENSOMEG00000001643puf60b9985.371ENSDARG00000032175puf60a9991.925Danio_rerio
ENSOMEG00000001643puf60b10080.792ENSDARG00000001241puf60b9998.413Danio_rerio
ENSOMEG00000001643puf60b9969.758ENSDNOG00000043278PUF609068.571Dasypus_novemcinctus
ENSOMEG00000001643puf60b10082.341ENSDORG00000004585Puf609582.528Dipodomys_ordii
ENSOMEG00000001643puf60b8666.667FBgn0028577hfp9949.110Drosophila_melanogaster
ENSOMEG00000001643puf60b9770.515ENSEBUG00000005470-8870.515Eptatretus_burgeri
ENSOMEG00000001643puf60b10059.478ENSEBUG00000014291puf60b8462.309Eptatretus_burgeri
ENSOMEG00000001643puf60b9983.232ENSEASG00005009695PUF609882.528Equus_asinus_asinus
ENSOMEG00000001643puf60b9983.232ENSECAG00000024681PUF609882.407Equus_caballus
ENSOMEG00000001643puf60b10086.176ENSELUG00000006507puf60b10086.535Esox_lucius
ENSOMEG00000001643puf60b10086.322ENSELUG00000018443-10086.322Esox_lucius
ENSOMEG00000001643puf60b9983.232ENSFCAG00000001045PUF6010083.083Felis_catus
ENSOMEG00000001643puf60b9974.907ENSFALG00000001136PUF609875.279Ficedula_albicollis
ENSOMEG00000001643puf60b9983.030ENSFDAG00000017177PUF609382.342Fukomys_damarensis
ENSOMEG00000001643puf60b9981.148ENSFHEG00000021687PUF6010081.743Fundulus_heteroclitus
ENSOMEG00000001643puf60b10095.531ENSFHEG00000020046puf60b10095.802Fundulus_heteroclitus
ENSOMEG00000001643puf60b9980.748ENSGMOG00000006392puf60b10080.748Gadus_morhua
ENSOMEG00000001643puf60b6489.274ENSGALG00000039901PUF609486.158Gallus_gallus
ENSOMEG00000001643puf60b10082.062ENSGAFG00000004334-10081.781Gambusia_affinis
ENSOMEG00000001643puf60b10095.903ENSGAFG00000021040puf60b10096.183Gambusia_affinis
ENSOMEG00000001643puf60b9981.698ENSGACG00000004717puf60b9881.698Gasterosteus_aculeatus
ENSOMEG00000001643puf60b9973.013ENSGACG00000001484-10070.363Gasterosteus_aculeatus
ENSOMEG00000001643puf60b9983.434ENSGAGG00000013289PUF609382.320Gopherus_agassizii
ENSOMEG00000001643puf60b9983.030ENSGGOG00000004646PUF609882.342Gorilla_gorilla
ENSOMEG00000001643puf60b10081.579ENSHBUG00000009634-10081.579Haplochromis_burtoni
ENSOMEG00000001643puf60b10094.413ENSHBUG00000015118puf60b10094.656Haplochromis_burtoni
ENSOMEG00000001643puf60b9983.030ENSHGLG00000006111PUF609382.342Heterocephalus_glaber_female
ENSOMEG00000001643puf60b9983.030ENSHGLG00100012362PUF609382.342Heterocephalus_glaber_male
ENSOMEG00000001643puf60b9969.102ENSHCOG00000000378-9966.341Hippocampus_comes
ENSOMEG00000001643puf60b9895.131ENSHCOG00000015541puf60b10095.131Hippocampus_comes
ENSOMEG00000001643puf60b10084.444ENSIPUG00000002453puf60a9984.444Ictalurus_punctatus
ENSOMEG00000001643puf60b10082.143ENSIPUG00000004660puf60b9982.540Ictalurus_punctatus
ENSOMEG00000001643puf60b9983.232ENSSTOG00000025037PUF609482.342Ictidomys_tridecemlineatus
ENSOMEG00000001643puf60b10082.341ENSJJAG00000001076Puf609382.528Jaculus_jaculus
ENSOMEG00000001643puf60b9995.483ENSKMAG00000016745puf60b10095.611Kryptolebias_marmoratus
ENSOMEG00000001643puf60b9977.254ENSKMAG00000010106-10076.822Kryptolebias_marmoratus
ENSOMEG00000001643puf60b9893.928ENSLBEG00000012505puf60b9993.928Labrus_bergylta
ENSOMEG00000001643puf60b7081.844ENSLACG00000005456PUF609977.719Latimeria_chalumnae
ENSOMEG00000001643puf60b10086.271ENSLOCG00000010106puf60b10086.456Lepisosteus_oculatus
ENSOMEG00000001643puf60b9982.222ENSLAFG00000022929PUF609481.413Loxodonta_africana
ENSOMEG00000001643puf60b9983.030ENSMFAG00000043373PUF609981.801Macaca_fascicularis
ENSOMEG00000001643puf60b9983.030ENSMMUG00000013558PUF609882.342Macaca_mulatta
ENSOMEG00000001643puf60b9983.030ENSMNEG00000031099PUF609882.342Macaca_nemestrina
ENSOMEG00000001643puf60b9983.030ENSMLEG00000040009PUF6010082.895Mandrillus_leucophaeus
ENSOMEG00000001643puf60b9895.066ENSMAMG00000010394puf60b10095.066Mastacembelus_armatus
ENSOMEG00000001643puf60b9981.967ENSMAMG00000019476-10080.891Mastacembelus_armatus
ENSOMEG00000001643puf60b10093.750ENSMZEG00005018515puf60b10094.656Maylandia_zebra
ENSOMEG00000001643puf60b9981.967ENSMZEG00005019425-10080.855Maylandia_zebra
ENSOMEG00000001643puf60b9983.434ENSMGAG00000013070PUF609586.479Meleagris_gallopavo
ENSOMEG00000001643puf60b9966.000ENSMAUG00000018549-9567.213Mesocricetus_auratus
ENSOMEG00000001643puf60b6988.047ENSMAUG00000014267-8888.047Mesocricetus_auratus
ENSOMEG00000001643puf60b9983.232ENSMICG00000012226PUF609982.593Microcebus_murinus
ENSOMEG00000001643puf60b10082.341ENSMOCG00000018780Puf609382.528Microtus_ochrogaster
ENSOMEG00000001643puf60b10075.258ENSMMOG00000018059-9978.404Mola_mola
ENSOMEG00000001643puf60b9994.661ENSMMOG00000004217puf60b10094.847Mola_mola
ENSOMEG00000001643puf60b9983.232ENSMODG00000009161PUF609481.970Monodelphis_domestica
ENSOMEG00000001643puf60b10087.407ENSMALG00000006797puf60b10087.407Monopterus_albus
ENSOMEG00000001643puf60b9980.328ENSMALG00000000200-10078.253Monopterus_albus
ENSOMEG00000001643puf60b10082.540MGP_CAROLIEiJ_G0019910Puf609382.900Mus_caroli
ENSOMEG00000001643puf60b10082.540ENSMUSG00000002524Puf609382.900Mus_musculus
ENSOMEG00000001643puf60b10082.540MGP_PahariEiJ_G0019920Puf609382.900Mus_pahari
ENSOMEG00000001643puf60b10082.540MGP_SPRETEiJ_G0020812Puf609382.900Mus_spretus
ENSOMEG00000001643puf60b9983.030ENSMPUG00000008137PUF609282.156Mustela_putorius_furo
ENSOMEG00000001643puf60b10078.968ENSMLUG00000013032-9778.770Myotis_lucifugus
ENSOMEG00000001643puf60b9983.570ENSMLUG00000000238-9381.784Myotis_lucifugus
ENSOMEG00000001643puf60b10082.341ENSNGAG00000000712Puf6010083.271Nannospalax_galili
ENSOMEG00000001643puf60b8296.154ENSNBRG00000013047puf60b9696.154Neolamprologus_brichardi
ENSOMEG00000001643puf60b9982.377ENSNBRG00000017223-10081.227Neolamprologus_brichardi
ENSOMEG00000001643puf60b9983.030ENSNLEG00000002156PUF609882.156Nomascus_leucogenys
ENSOMEG00000001643puf60b7194.422ENSOPRG00000002147PUF607293.502Ochotona_princeps
ENSOMEG00000001643puf60b7288.889ENSODEG00000014024-8888.889Octodon_degus
ENSOMEG00000001643puf60b9961.382ENSODEG00000015513-9760.302Octodon_degus
ENSOMEG00000001643puf60b9981.762ENSONIG00000014030-9980.483Oreochromis_niloticus
ENSOMEG00000001643puf60b9994.528ENSONIG00000006247puf60b9894.528Oreochromis_niloticus
ENSOMEG00000001643puf60b9669.052ENSOANG00000006962PUF609869.632Ornithorhynchus_anatinus
ENSOMEG00000001643puf60b9981.856ENSORLG00000028655-9981.856Oryzias_latipes
ENSOMEG00000001643puf60b10097.207ENSORLG00000012279puf60b10097.207Oryzias_latipes
ENSOMEG00000001643puf60b9980.493ENSORLG00020018144-9978.664Oryzias_latipes_hni
ENSOMEG00000001643puf60b10097.207ENSORLG00020007333puf6010097.207Oryzias_latipes_hni
ENSOMEG00000001643puf60b10096.846ENSORLG00015007718puf60b10096.846Oryzias_latipes_hsok
ENSOMEG00000001643puf60b9980.493ENSORLG00015016833-9978.479Oryzias_latipes_hsok
ENSOMEG00000001643puf60b9983.232ENSOGAG00000006259PUF609382.342Otolemur_garnettii
ENSOMEG00000001643puf60b9981.301ENSOARG00000016235PUF609878.505Ovis_aries
ENSOMEG00000001643puf60b9983.030ENSPPAG00000029933PUF609981.618Pan_paniscus
ENSOMEG00000001643puf60b9983.232ENSPPRG00000003257PUF6010083.083Panthera_pardus
ENSOMEG00000001643puf60b10081.944ENSPTIG00000009795PUF609980.112Panthera_tigris_altaica
ENSOMEG00000001643puf60b9983.030ENSPTRG00000020670PUF609981.618Pan_troglodytes
ENSOMEG00000001643puf60b9983.030ENSPTRG00000043963-9882.156Pan_troglodytes
ENSOMEG00000001643puf60b9983.030ENSPANG00000021936PUF609882.342Papio_anubis
ENSOMEG00000001643puf60b10087.061ENSPKIG00000004295puf60a9988.439Paramormyrops_kingsleyae
ENSOMEG00000001643puf60b10087.709ENSPKIG00000012204puf60b10089.122Paramormyrops_kingsleyae
ENSOMEG00000001643puf60b9983.232ENSPSIG00000004679PUF609982.714Pelodiscus_sinensis
ENSOMEG00000001643puf60b10094.070ENSPMGG00000013444puf60b10093.519Periophthalmus_magnuspinnatus
ENSOMEG00000001643puf60b10082.341ENSPEMG00000008820Puf609382.528Peromyscus_maniculatus_bairdii
ENSOMEG00000001643puf60b9983.232ENSPCIG00000020270PUF609982.222Phascolarctos_cinereus
ENSOMEG00000001643puf60b10095.717ENSPFOG00000019217puf60b9895.161Poecilia_formosa
ENSOMEG00000001643puf60b9980.943ENSPFOG00000011118-10077.737Poecilia_formosa
ENSOMEG00000001643puf60b9981.148ENSPLAG00000017025-9277.551Poecilia_latipinna
ENSOMEG00000001643puf60b10095.161ENSPLAG00000010754puf60b10095.992Poecilia_latipinna
ENSOMEG00000001643puf60b10095.717ENSPMEG00000000838puf60b10095.992Poecilia_mexicana
ENSOMEG00000001643puf60b9981.148ENSPMEG00000009767-9277.922Poecilia_mexicana
ENSOMEG00000001643puf60b10097.119ENSPREG00000005440puf60b10097.119Poecilia_reticulata
ENSOMEG00000001643puf60b7981.443ENSPPYG00000018951-9580.139Pongo_abelii
ENSOMEG00000001643puf60b8082.995ENSPCAG00000014837PUF6010081.755Procavia_capensis
ENSOMEG00000001643puf60b9983.232ENSPCOG00000027981PUF609982.440Propithecus_coquereli
ENSOMEG00000001643puf60b9998.485ENSPVAG00000016167PUF608196.203Pteropus_vampyrus
ENSOMEG00000001643puf60b9981.967ENSPNYG00000004273-10080.855Pundamilia_nyererei
ENSOMEG00000001643puf60b9994.456ENSPNYG00000002556puf60b10094.656Pundamilia_nyererei
ENSOMEG00000001643puf60b10085.341ENSPNAG00000019909puf60a9986.345Pygocentrus_nattereri
ENSOMEG00000001643puf60b10082.520ENSPNAG00000019415puf60b8982.077Pygocentrus_nattereri
ENSOMEG00000001643puf60b10082.540ENSRNOG00000009960Puf609382.900Rattus_norvegicus
ENSOMEG00000001643puf60b9983.030ENSRBIG00000035274PUF609882.342Rhinopithecus_bieti
ENSOMEG00000001643puf60b9983.030ENSRROG00000029360PUF609982.342Rhinopithecus_roxellana
ENSOMEG00000001643puf60b9981.616ENSSBOG00000027089PUF609979.412Saimiri_boliviensis_boliviensis
ENSOMEG00000001643puf60b8981.893ENSSHAG00000006668PUF609081.687Sarcophilus_harrisii
ENSOMEG00000001643puf60b9987.755ENSSFOG00015019371puf60a9887.959Scleropages_formosus
ENSOMEG00000001643puf60b9986.820ENSSFOG00015019619puf60b9986.157Scleropages_formosus
ENSOMEG00000001643puf60b7897.980ENSSMAG00000016381puf60b7897.980Scophthalmus_maximus
ENSOMEG00000001643puf60b9781.559ENSSDUG00000007048-9782.409Seriola_dumerili
ENSOMEG00000001643puf60b9996.981ENSSDUG00000009935puf60b10096.258Seriola_dumerili
ENSOMEG00000001643puf60b10096.481ENSSLDG00000024011puf60b10096.584Seriola_lalandi_dorsalis
ENSOMEG00000001643puf60b10079.922ENSSLDG00000007366-9980.350Seriola_lalandi_dorsalis
ENSOMEG00000001643puf60b6578.182ENSSPUG00000013518PUF609278.182Sphenodon_punctatus
ENSOMEG00000001643puf60b10096.296ENSSPAG00000012144puf60b10096.584Stegastes_partitus
ENSOMEG00000001643puf60b9982.041ENSSPAG00000020285-10082.353Stegastes_partitus
ENSOMEG00000001643puf60b9983.232ENSSSCG00000038800PUF609781.944Sus_scrofa
ENSOMEG00000001643puf60b9980.769ENSTGUG00000012797-10080.633Taeniopygia_guttata
ENSOMEG00000001643puf60b10079.555ENSTRUG00000008843-10079.352Takifugu_rubripes
ENSOMEG00000001643puf60b10097.222ENSTRUG00000005420puf60b10097.343Takifugu_rubripes
ENSOMEG00000001643puf60b9978.029ENSTNIG00000003069-9977.736Tetraodon_nigroviridis
ENSOMEG00000001643puf60b9995.688ENSTNIG00000013675puf60b9995.660Tetraodon_nigroviridis
ENSOMEG00000001643puf60b8063.533ENSTBEG00000001899-10064.103Tupaia_belangeri
ENSOMEG00000001643puf60b6485.567ENSTBEG00000002751-9785.567Tupaia_belangeri
ENSOMEG00000001643puf60b9981.818ENSTTRG00000017088PUF6010081.391Tursiops_truncatus
ENSOMEG00000001643puf60b9983.232ENSUAMG00000024917PUF609882.528Ursus_americanus
ENSOMEG00000001643puf60b9980.448ENSUMAG00000000272PUF609377.138Ursus_maritimus
ENSOMEG00000001643puf60b9983.232ENSVVUG00000022527PUF6010083.083Vulpes_vulpes
ENSOMEG00000001643puf60b9982.828ENSXETG00000012469puf609881.530Xenopus_tropicalis
ENSOMEG00000001643puf60b10095.161ENSXCOG00000012355puf60b10095.161Xiphophorus_couchianus
ENSOMEG00000001643puf60b10079.798ENSXMAG00000010507-9879.394Xiphophorus_maculatus
ENSOMEG00000001643puf60b10095.717ENSXMAG00000001862puf60b10095.992Xiphophorus_maculatus

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