EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000001845 (Gene tree)
Gene ID: 112155500
Gene Symbol: smarcal1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 11483 bases
Position: chrNVQA01000019.1:12065758-12077240
Accession: 112155500
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000000961	ResIII	PF04851.15	3.8e-07	1	1
ENSOMEP00000000950	ResIII	PF04851.15	4.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000014999	-	2586	-	ENSOMEP00000000961	861 (aa)	-	-
ENSOMET00000014988	-	4339	-	ENSOMEP00000000950	888 (aa)	XP_024142926	UPI000CF7C940

Gene Model

Click here to download ENSOMEG00000001845's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000001845's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000001845	smarcal1	88	56.471	ENSG00000138375	SMARCAL1	99	67.702	Homo_sapiens
ENSOMEG00000001845	smarcal1	99	75.163	ENSAPOG00000020156	SMARCAL1	99	75.163	Acanthochromis_polyacanthus
ENSOMEG00000001845	smarcal1	92	77.972	ENSACIG00000001500	smarcal1	97	77.972	Amphilophus_citrinellus
ENSOMEG00000001845	smarcal1	98	75.139	ENSAOCG00000014266	SMARCAL1	99	75.250	Amphiprion_ocellaris
ENSOMEG00000001845	smarcal1	99	74.809	ENSAPEG00000015861	SMARCAL1	99	78.125	Amphiprion_percula
ENSOMEG00000001845	smarcal1	100	73.478	ENSATEG00000020624	SMARCAL1	100	73.478	Anabas_testudineus
ENSOMEG00000001845	smarcal1	82	60.644	ENSAPLG00000009864	SMARCAL1	74	60.274	Anas_platyrhynchos
ENSOMEG00000001845	smarcal1	85	61.186	ENSACAG00000004612	SMARCAL1	74	61.186	Anolis_carolinensis
ENSOMEG00000001845	smarcal1	98	74.413	ENSACLG00000015990	SMARCAL1	99	74.860	Astatotilapia_calliptera
ENSOMEG00000001845	smarcal1	100	64.350	ENSAMXG00000003350	smarcal1	99	64.350	Astyanax_mexicanus
ENSOMEG00000001845	smarcal1	100	61.898	ENSCPBG00000013599	SMARCAL1	99	61.898	Chrysemys_picta_bellii
ENSOMEG00000001845	smarcal1	78	48.433	ENSCING00000009308	-	100	48.433	Ciona_intestinalis
ENSOMEG00000001845	smarcal1	97	70.529	ENSCSEG00000010785	SMARCAL1	99	71.073	Cynoglossus_semilaevis
ENSOMEG00000001845	smarcal1	100	72.352	ENSCVAG00000018780	SMARCAL1	100	72.352	Cyprinodon_variegatus
ENSOMEG00000001845	smarcal1	77	46.453	ENSEBUG00000011906	SMARCAL1	99	47.427	Eptatretus_burgeri
ENSOMEG00000001845	smarcal1	82	73.315	ENSELUG00000010440	-	96	70.079	Esox_lucius
ENSOMEG00000001845	smarcal1	94	54.340	ENSFALG00000003981	SMARCAL1	84	54.340	Ficedula_albicollis
ENSOMEG00000001845	smarcal1	100	73.043	ENSFHEG00000008380	SMARCAL1	100	73.460	Fundulus_heteroclitus
ENSOMEG00000001845	smarcal1	63	73.286	ENSGMOG00000010034	smarcal1	93	73.286	Gadus_morhua
ENSOMEG00000001845	smarcal1	96	57.584	ENSGALG00000011475	RPL37A	96	57.584	Gallus_gallus
ENSOMEG00000001845	smarcal1	87	81.121	ENSGACG00000006073	SMARCAL1	100	83.613	Gasterosteus_aculeatus
ENSOMEG00000001845	smarcal1	92	64.580	ENSGAGG00000015660	SMARCAL1	99	64.580	Gopherus_agassizii
ENSOMEG00000001845	smarcal1	98	74.860	ENSHBUG00000002973	smarcal1	99	74.860	Haplochromis_burtoni
ENSOMEG00000001845	smarcal1	95	70.813	ENSHCOG00000017921	smarcal1	98	70.813	Hippocampus_comes
ENSOMEG00000001845	smarcal1	97	75.573	ENSKMAG00000012023	SMARCAL1	99	75.917	Kryptolebias_marmoratus
ENSOMEG00000001845	smarcal1	89	78.984	ENSLBEG00000003493	smarcal1	100	72.281	Labrus_bergylta
ENSOMEG00000001845	smarcal1	92	75.281	ENSLBEG00000022915	smarcal1	99	75.281	Labrus_bergylta
ENSOMEG00000001845	smarcal1	99	56.031	ENSLACG00000010974	SMARCAL1	99	49.741	Latimeria_chalumnae
ENSOMEG00000001845	smarcal1	92	64.033	ENSLOCG00000009637	smarcal1	99	64.033	Lepisosteus_oculatus
ENSOMEG00000001845	smarcal1	98	75.792	ENSMAMG00000000828	SMARCAL1	99	75.792	Mastacembelus_armatus
ENSOMEG00000001845	smarcal1	98	74.302	ENSMZEG00005007660	SMARCAL1	99	74.749	Maylandia_zebra
ENSOMEG00000001845	smarcal1	96	53.532	ENSMGAG00000011658	SMARCAL1	96	53.532	Meleagris_gallopavo
ENSOMEG00000001845	smarcal1	92	72.647	ENSMMOG00000003842	smarcal1	94	72.647	Mola_mola
ENSOMEG00000001845	smarcal1	84	57.866	ENSMODG00000015544	SMARCAL1	75	57.866	Monodelphis_domestica
ENSOMEG00000001845	smarcal1	92	76.971	ENSNBRG00000016273	smarcal1	97	76.971	Neolamprologus_brichardi
ENSOMEG00000001845	smarcal1	92	50.612	ENSMEUG00000004395	SMARCAL1	100	50.612	Notamacropus_eugenii
ENSOMEG00000001845	smarcal1	98	74.525	ENSONIG00000009036	smarcal1	100	83.285	Oreochromis_niloticus
ENSOMEG00000001845	smarcal1	100	90.370	ENSORLG00000016455	SMARCAL1	100	90.370	Oryzias_latipes
ENSOMEG00000001845	smarcal1	100	90.594	ENSORLG00020001610	SMARCAL1	100	90.594	Oryzias_latipes_hni
ENSOMEG00000001845	smarcal1	100	90.817	ENSORLG00015001865	SMARCAL1	100	90.817	Oryzias_latipes_hsok
ENSOMEG00000001845	smarcal1	100	69.921	ENSPMGG00000019092	SMARCAL1	100	70.146	Periophthalmus_magnuspinnatus
ENSOMEG00000001845	smarcal1	96	59.456	ENSPCIG00000022514	SMARCAL1	99	61.187	Phascolarctos_cinereus
ENSOMEG00000001845	smarcal1	100	72.626	ENSPFOG00000000560	SMARCAL1	100	72.626	Poecilia_formosa
ENSOMEG00000001845	smarcal1	100	72.626	ENSPMEG00000018146	SMARCAL1	100	72.626	Poecilia_mexicana
ENSOMEG00000001845	smarcal1	62	87.879	ENSPREG00000009591	SMARCAL1	99	86.499	Poecilia_reticulata
ENSOMEG00000001845	smarcal1	100	64.246	ENSPNAG00000014900	smarcal1	95	64.246	Pygocentrus_nattereri
ENSOMEG00000001845	smarcal1	96	52.658	ENSSHAG00000013538	SMARCAL1	97	52.658	Sarcophilus_harrisii
ENSOMEG00000001845	smarcal1	100	71.490	ENSSMAG00000010427	SMARCAL1	100	71.490	Scophthalmus_maximus
ENSOMEG00000001845	smarcal1	97	74.247	ENSSDUG00000017470	SMARCAL1	95	74.219	Seriola_dumerili
ENSOMEG00000001845	smarcal1	100	73.268	ENSSLDG00000007224	SMARCAL1	100	73.268	Seriola_lalandi_dorsalis
ENSOMEG00000001845	smarcal1	81	65.318	ENSSPUG00000015369	SMARCAL1	69	65.418	Sphenodon_punctatus
ENSOMEG00000001845	smarcal1	93	79.602	ENSSPAG00000003742	smarcal1	99	79.602	Stegastes_partitus
ENSOMEG00000001845	smarcal1	81	56.304	ENSSSCG00000035501	SMARCAL1	77	56.304	Sus_scrofa
ENSOMEG00000001845	smarcal1	80	60.704	ENSTGUG00000005079	SMARCAL1	99	60.704	Taeniopygia_guttata
ENSOMEG00000001845	smarcal1	97	65.448	ENSTRUG00000010701	SMARCAL1	98	65.448	Takifugu_rubripes
ENSOMEG00000001845	smarcal1	97	51.146	ENSTTRG00000009001	SMARCAL1	96	51.146	Tursiops_truncatus
ENSOMEG00000001845	smarcal1	96	55.543	ENSXETG00000000465	smarcal1	97	55.543	Xenopus_tropicalis