EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000002328 (Gene tree)
Gene ID: 112144248
Gene Symbol: smg7
Alias: -
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 14248 bases
Position: chrNVQA01000008.1:754971-769218
Accession: 112144248
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000022666	EST1	PF10374.9	6.3e-25	1	1
ENSOMEP00000001434	EST1	PF10374.9	7.3e-25	1	1
ENSOMEP00000001434	EST1_DNA_bind	PF10373.9	6.5e-47	1	1
ENSOMEP00000022666	EST1_DNA_bind	PF10373.9	6.7e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000014193	-	5102	XM_024268657	ENSOMEP00000022666	1145 (aa)	XP_024124425	UPI000CF826A0
ENSOMET00000014182	-	5171	-	ENSOMEP00000001434	1123 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000002328's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000002328's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000002328	smg7	99	62.438	ENSG00000116698	SMG7	88	90.683	Homo_sapiens
ENSOMEG00000002328	smg7	89	82.692	ENSAPOG00000009611	smg7	99	63.797	Acanthochromis_polyacanthus
ENSOMEG00000002328	smg7	99	62.489	ENSAMEG00000002357	SMG7	100	62.969	Ailuropoda_melanoleuca
ENSOMEG00000002328	smg7	97	75.327	ENSACIG00000015152	smg7	100	75.240	Amphilophus_citrinellus
ENSOMEG00000002328	smg7	100	81.568	ENSAOCG00000013538	smg7	100	82.402	Amphiprion_ocellaris
ENSOMEG00000002328	smg7	100	81.750	ENSAPEG00000007851	smg7	100	82.583	Amphiprion_percula
ENSOMEG00000002328	smg7	100	78.214	ENSATEG00000006931	smg7	100	78.381	Anabas_testudineus
ENSOMEG00000002328	smg7	99	62.235	ENSAPLG00000015811	SMG7	99	61.792	Anas_platyrhynchos
ENSOMEG00000002328	smg7	99	63.636	ENSACAG00000014989	SMG7	99	63.465	Anolis_carolinensis
ENSOMEG00000002328	smg7	99	63.180	ENSANAG00000028114	SMG7	85	91.083	Aotus_nancymaae
ENSOMEG00000002328	smg7	100	81.208	ENSACLG00000022079	smg7	100	80.369	Astatotilapia_calliptera
ENSOMEG00000002328	smg7	100	74.601	ENSAMXG00000020809	smg7	100	74.559	Astyanax_mexicanus
ENSOMEG00000002328	smg7	99	62.438	ENSBTAG00000008003	SMG7	99	61.718	Bos_taurus
ENSOMEG00000002328	smg7	99	63.366	ENSCJAG00000005135	SMG7	89	88.889	Callithrix_jacchus
ENSOMEG00000002328	smg7	99	62.769	ENSCAFG00000013276	SMG7	97	62.407	Canis_familiaris
ENSOMEG00000002328	smg7	99	63.786	ENSCAFG00020015475	SMG7	89	88.415	Canis_lupus_dingo
ENSOMEG00000002328	smg7	100	62.552	ENSCHIG00000018192	SMG7	99	62.552	Capra_hircus
ENSOMEG00000002328	smg7	99	62.969	ENSTSYG00000002667	SMG7	80	92.258	Carlito_syrichta
ENSOMEG00000002328	smg7	99	63.184	ENSCPOG00000008906	SMG7	99	62.802	Cavia_porcellus
ENSOMEG00000002328	smg7	99	62.331	ENSCCAG00000028596	SMG7	85	91.083	Cebus_capucinus
ENSOMEG00000002328	smg7	99	62.604	ENSCATG00000011063	SMG7	85	91.083	Cercocebus_atys
ENSOMEG00000002328	smg7	99	62.926	ENSCLAG00000010751	SMG7	99	63.009	Chinchilla_lanigera
ENSOMEG00000002328	smg7	99	62.687	ENSCSAG00000012654	SMG7	97	62.769	Chlorocebus_sabaeus
ENSOMEG00000002328	smg7	86	58.947	ENSCHOG00000010522	SMG7	82	60.988	Choloepus_hoffmanni
ENSOMEG00000002328	smg7	99	64.876	ENSCPBG00000015724	SMG7	99	64.215	Chrysemys_picta_bellii
ENSOMEG00000002328	smg7	99	62.119	ENSCANG00000015680	SMG7	85	91.083	Colobus_angolensis_palliatus
ENSOMEG00000002328	smg7	99	62.812	ENSCGRG00001013705	Smg7	99	62.812	Cricetulus_griseus_chok1gshd
ENSOMEG00000002328	smg7	99	62.490	ENSCGRG00000018401	Smg7	100	61.925	Cricetulus_griseus_crigri
ENSOMEG00000002328	smg7	99	79.205	ENSCVAG00000011842	smg7	100	78.952	Cyprinodon_variegatus
ENSOMEG00000002328	smg7	100	73.389	ENSDARG00000060767	smg7	100	73.099	Danio_rerio
ENSOMEG00000002328	smg7	99	62.719	ENSDORG00000007331	Smg7	99	62.719	Dipodomys_ordii
ENSOMEG00000002328	smg7	96	61.459	ENSETEG00000002654	SMG7	99	61.459	Echinops_telfairi
ENSOMEG00000002328	smg7	99	62.843	ENSEASG00005006524	SMG7	99	62.760	Equus_asinus_asinus
ENSOMEG00000002328	smg7	99	62.843	ENSECAG00000004313	SMG7	99	62.760	Equus_caballus
ENSOMEG00000002328	smg7	96	61.268	ENSEEUG00000002024	SMG7	94	61.268	Erinaceus_europaeus
ENSOMEG00000002328	smg7	100	74.708	ENSELUG00000010293	smg7	100	74.791	Esox_lucius
ENSOMEG00000002328	smg7	99	63.591	ENSFCAG00000010900	SMG7	99	63.228	Felis_catus
ENSOMEG00000002328	smg7	99	63.104	ENSFALG00000003047	SMG7	100	63.621	Ficedula_albicollis
ENSOMEG00000002328	smg7	99	62.417	ENSFDAG00000012121	SMG7	99	62.237	Fukomys_damarensis
ENSOMEG00000002328	smg7	100	77.117	ENSFHEG00000011073	smg7	100	76.697	Fundulus_heteroclitus
ENSOMEG00000002328	smg7	85	79.661	ENSGMOG00000004916	smg7	91	79.661	Gadus_morhua
ENSOMEG00000002328	smg7	99	62.426	ENSGALG00000004667	SMG7	99	62.185	Gallus_gallus
ENSOMEG00000002328	smg7	100	76.826	ENSGAFG00000019000	smg7	100	76.490	Gambusia_affinis
ENSOMEG00000002328	smg7	98	77.604	ENSGACG00000001634	smg7	99	77.652	Gasterosteus_aculeatus
ENSOMEG00000002328	smg7	99	62.687	ENSGGOG00000002342	SMG7	78	92.810	Gorilla_gorilla
ENSOMEG00000002328	smg7	100	81.376	ENSHBUG00000003726	smg7	100	80.621	Haplochromis_burtoni
ENSOMEG00000002328	smg7	99	62.130	ENSHGLG00000009353	SMG7	100	62.574	Heterocephalus_glaber_female
ENSOMEG00000002328	smg7	99	56.845	ENSHGLG00100004878	-	99	56.761	Heterocephalus_glaber_male
ENSOMEG00000002328	smg7	99	62.046	ENSHGLG00100009637	-	100	61.060	Heterocephalus_glaber_male
ENSOMEG00000002328	smg7	100	74.558	ENSIPUG00000016997	smg7	100	74.136	Ictalurus_punctatus
ENSOMEG00000002328	smg7	99	62.760	ENSSTOG00000000401	SMG7	99	62.843	Ictidomys_tridecemlineatus
ENSOMEG00000002328	smg7	99	62.479	ENSJJAG00000012351	Smg7	99	62.396	Jaculus_jaculus
ENSOMEG00000002328	smg7	97	72.328	ENSKMAG00000004900	smg7	100	72.845	Kryptolebias_marmoratus
ENSOMEG00000002328	smg7	99	74.264	ENSLBEG00000002983	smg7	99	72.278	Labrus_bergylta
ENSOMEG00000002328	smg7	52	73.524	ENSLBEG00000005220	-	75	73.693	Labrus_bergylta
ENSOMEG00000002328	smg7	100	65.686	ENSLACG00000000972	SMG7	100	65.874	Latimeria_chalumnae
ENSOMEG00000002328	smg7	99	68.268	ENSLOCG00000002010	smg7	99	68.351	Lepisosteus_oculatus
ENSOMEG00000002328	smg7	99	62.250	ENSLAFG00000008186	SMG7	99	62.333	Loxodonta_africana
ENSOMEG00000002328	smg7	99	62.926	ENSMFAG00000031653	SMG7	85	91.083	Macaca_fascicularis
ENSOMEG00000002328	smg7	99	62.975	ENSMMUG00000018458	SMG7	99	63.058	Macaca_mulatta
ENSOMEG00000002328	smg7	99	62.247	ENSMNEG00000034798	SMG7	85	91.083	Macaca_nemestrina
ENSOMEG00000002328	smg7	99	62.604	ENSMLEG00000037170	SMG7	100	63.010	Mandrillus_leucophaeus
ENSOMEG00000002328	smg7	88	78.713	ENSMAMG00000018733	smg7	86	79.451	Mastacembelus_armatus
ENSOMEG00000002328	smg7	100	81.208	ENSMZEG00005015247	smg7	100	80.285	Maylandia_zebra
ENSOMEG00000002328	smg7	99	62.171	ENSMGAG00000001561	SMG7	99	61.760	Meleagris_gallopavo
ENSOMEG00000002328	smg7	99	62.812	ENSMAUG00000019484	Smg7	99	62.812	Mesocricetus_auratus
ENSOMEG00000002328	smg7	99	64.126	ENSMICG00000007145	SMG7	82	91.083	Microcebus_murinus
ENSOMEG00000002328	smg7	99	62.396	ENSMOCG00000020748	Smg7	99	62.146	Microtus_ochrogaster
ENSOMEG00000002328	smg7	99	71.804	ENSMMOG00000001524	smg7	99	69.477	Mola_mola
ENSOMEG00000002328	smg7	92	61.538	ENSMODG00000007139	SMG7	99	61.448	Monodelphis_domestica
ENSOMEG00000002328	smg7	100	81.313	ENSMALG00000000061	smg7	93	85.714	Monopterus_albus
ENSOMEG00000002328	smg7	99	62.833	MGP_CAROLIEiJ_G0014704	Smg7	99	62.750	Mus_caroli
ENSOMEG00000002328	smg7	99	62.562	ENSMUSG00000042772	Smg7	99	62.562	Mus_musculus
ENSOMEG00000002328	smg7	99	62.719	MGP_PahariEiJ_G0027940	Smg7	99	62.594	Mus_pahari
ENSOMEG00000002328	smg7	99	62.646	MGP_SPRETEiJ_G0015511	Smg7	99	62.646	Mus_spretus
ENSOMEG00000002328	smg7	98	62.826	ENSMPUG00000011732	SMG7	97	62.458	Mustela_putorius_furo
ENSOMEG00000002328	smg7	99	62.448	ENSMLUG00000015417	SMG7	99	62.281	Myotis_lucifugus
ENSOMEG00000002328	smg7	100	62.310	ENSNGAG00000009836	Smg7	100	62.205	Nannospalax_galili
ENSOMEG00000002328	smg7	98	70.077	ENSNBRG00000024343	smg7	99	66.864	Neolamprologus_brichardi
ENSOMEG00000002328	smg7	99	62.687	ENSNLEG00000018018	SMG7	100	63.095	Nomascus_leucogenys
ENSOMEG00000002328	smg7	70	65.341	ENSMEUG00000004681	SMG7	73	65.341	Notamacropus_eugenii
ENSOMEG00000002328	smg7	96	58.471	ENSOPRG00000013942	SMG7	96	58.471	Ochotona_princeps
ENSOMEG00000002328	smg7	99	63.062	ENSODEG00000010390	SMG7	99	63.062	Octodon_degus
ENSOMEG00000002328	smg7	100	78.086	ENSONIG00000000277	smg7	100	77.246	Oreochromis_niloticus
ENSOMEG00000002328	smg7	99	62.364	ENSOANG00000000994	SMG7	100	62.280	Ornithorhynchus_anatinus
ENSOMEG00000002328	smg7	99	60.714	ENSOCUG00000005887	SMG7	93	61.213	Oryctolagus_cuniculus
ENSOMEG00000002328	smg7	100	95.895	ENSORLG00000007314	smg7	100	95.895	Oryzias_latipes
ENSOMEG00000002328	smg7	100	96.507	ENSORLG00020015779	smg7	100	96.507	Oryzias_latipes_hni
ENSOMEG00000002328	smg7	100	95.197	ENSORLG00015012289	smg7	100	95.371	Oryzias_latipes_hsok
ENSOMEG00000002328	smg7	96	62.489	ENSOGAG00000003107	SMG7	93	62.113	Otolemur_garnettii
ENSOMEG00000002328	smg7	99	62.769	ENSOARG00000001352	SMG7	100	60.884	Ovis_aries
ENSOMEG00000002328	smg7	99	62.331	ENSPPAG00000031619	SMG7	85	91.083	Pan_paniscus
ENSOMEG00000002328	smg7	99	63.267	ENSPPRG00000011222	SMG7	99	62.468	Panthera_pardus
ENSOMEG00000002328	smg7	96	63.605	ENSPTIG00000007242	SMG7	100	63.234	Panthera_tigris_altaica
ENSOMEG00000002328	smg7	99	62.331	ENSPTRG00000001764	SMG7	85	91.083	Pan_troglodytes
ENSOMEG00000002328	smg7	99	62.604	ENSPANG00000004520	SMG7	99	62.247	Papio_anubis
ENSOMEG00000002328	smg7	100	69.687	ENSPKIG00000007242	smg7	100	69.687	Paramormyrops_kingsleyae
ENSOMEG00000002328	smg7	99	64.040	ENSPSIG00000012201	SMG7	99	63.034	Pelodiscus_sinensis
ENSOMEG00000002328	smg7	61	58.706	ENSPMGG00000021833	smg7	98	44.249	Periophthalmus_magnuspinnatus
ENSOMEG00000002328	smg7	99	62.375	ENSPEMG00000011315	Smg7	99	62.292	Peromyscus_maniculatus_bairdii
ENSOMEG00000002328	smg7	99	63.967	ENSPCIG00000003786	SMG7	89	91.250	Phascolarctos_cinereus
ENSOMEG00000002328	smg7	100	80.117	ENSPFOG00000019219	smg7	100	80.453	Poecilia_formosa
ENSOMEG00000002328	smg7	100	76.891	ENSPLAG00000001446	smg7	100	77.227	Poecilia_latipinna
ENSOMEG00000002328	smg7	97	76.323	ENSPMEG00000005218	smg7	99	76.670	Poecilia_mexicana
ENSOMEG00000002328	smg7	92	77.046	ENSPREG00000019039	smg7	99	76.670	Poecilia_reticulata
ENSOMEG00000002328	smg7	99	62.331	ENSPPYG00000000427	SMG7	99	62.331	Pongo_abelii
ENSOMEG00000002328	smg7	84	70.678	ENSPCAG00000008360	SMG7	86	70.678	Procavia_capensis
ENSOMEG00000002328	smg7	99	63.101	ENSPCOG00000011996	SMG7	77	91.083	Propithecus_coquereli
ENSOMEG00000002328	smg7	91	58.711	ENSPVAG00000000851	SMG7	89	58.583	Pteropus_vampyrus
ENSOMEG00000002328	smg7	100	81.360	ENSPNYG00000007643	smg7	100	80.605	Pundamilia_nyererei
ENSOMEG00000002328	smg7	100	73.768	ENSPNAG00000011374	smg7	100	73.978	Pygocentrus_nattereri
ENSOMEG00000002328	smg7	99	62.969	ENSRNOG00000027962	Smg7	99	65.119	Rattus_norvegicus
ENSOMEG00000002328	smg7	99	62.521	ENSRBIG00000036316	SMG7	100	62.925	Rhinopithecus_bieti
ENSOMEG00000002328	smg7	99	62.843	ENSRROG00000035719	SMG7	100	62.925	Rhinopithecus_roxellana
ENSOMEG00000002328	smg7	99	62.209	ENSSBOG00000023454	SMG7	88	90.683	Saimiri_boliviensis_boliviensis
ENSOMEG00000002328	smg7	99	62.160	ENSSHAG00000013147	SMG7	99	61.767	Sarcophilus_harrisii
ENSOMEG00000002328	smg7	100	71.189	ENSSFOG00015017252	smg7	100	71.106	Scleropages_formosus
ENSOMEG00000002328	smg7	100	80.424	ENSSMAG00000006067	smg7	100	80.948	Scophthalmus_maximus
ENSOMEG00000002328	smg7	69	88.000	ENSSDUG00000017543	smg7	100	78.969	Seriola_dumerili
ENSOMEG00000002328	smg7	99	62.479	ENSSPUG00000002064	SMG7	99	61.551	Sphenodon_punctatus
ENSOMEG00000002328	smg7	98	77.094	ENSSPAG00000008733	smg7	98	76.864	Stegastes_partitus
ENSOMEG00000002328	smg7	99	62.843	ENSSSCG00000015558	SMG7	99	62.760	Sus_scrofa
ENSOMEG00000002328	smg7	99	62.680	ENSTGUG00000003928	SMG7	100	62.267	Taeniopygia_guttata
ENSOMEG00000002328	smg7	100	71.865	ENSTNIG00000002802	smg7	100	70.992	Tetraodon_nigroviridis
ENSOMEG00000002328	smg7	79	66.286	ENSTBEG00000003220	SMG7	75	66.286	Tupaia_belangeri
ENSOMEG00000002328	smg7	96	61.704	ENSTTRG00000014778	SMG7	94	61.618	Tursiops_truncatus
ENSOMEG00000002328	smg7	96	60.755	ENSUAMG00000017473	SMG7	100	60.281	Ursus_americanus
ENSOMEG00000002328	smg7	96	62.436	ENSUMAG00000016389	SMG7	100	62.060	Ursus_maritimus
ENSOMEG00000002328	smg7	99	63.092	ENSVVUG00000008976	SMG7	99	62.729	Vulpes_vulpes
ENSOMEG00000002328	smg7	99	57.657	ENSXETG00000012528	smg7	99	56.976	Xenopus_tropicalis
ENSOMEG00000002328	smg7	100	76.367	ENSXMAG00000007123	smg7	100	76.030	Xiphophorus_maculatus