EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000002509 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 7803 bases
Position: chrNVQA01000018.1:17856156-17863958
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000022740	RRM_1	PF00076.22	1.1e-45	1	3
ENSOMEP00000022740	RRM_1	PF00076.22	1.1e-45	2	3
ENSOMEP00000022740	RRM_1	PF00076.22	1.1e-45	3	3
ENSOMEP00000001537	RRM_1	PF00076.22	1.1e-45	1	3
ENSOMEP00000001537	RRM_1	PF00076.22	1.1e-45	2	3
ENSOMEP00000001537	RRM_1	PF00076.22	1.1e-45	3	3
ENSOMEP00000022750	RRM_1	PF00076.22	2.3e-30	1	2
ENSOMEP00000022750	RRM_1	PF00076.22	2.3e-30	2	2
ENSOMEP00000022767	RRM_1	PF00076.22	5.1e-30	1	2
ENSOMEP00000022767	RRM_1	PF00076.22	5.1e-30	2	2
ENSOMEP00000001549	RRM_1	PF00076.22	5.9e-28	1	2
ENSOMEP00000001549	RRM_1	PF00076.22	5.9e-28	2	2
ENSOMEP00000001568	RRM_1	PF00076.22	1.4e-27	1	2
ENSOMEP00000001568	RRM_1	PF00076.22	1.4e-27	2	2
ENSOMEP00000022737	RRM_1	PF00076.22	3.2e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000014004	-	1380	-	ENSOMEP00000022740	459 (aa)	-	-
ENSOMET00000014002	-	1395	-	ENSOMEP00000001537	464 (aa)	-	-
ENSOMET00000013903	-	879	-	ENSOMEP00000022767	292 (aa)	-	-
ENSOMET00000013993	-	1035	-	ENSOMEP00000022750	344 (aa)	-	-
ENSOMET00000013985	-	726	-	ENSOMEP00000001549	241 (aa)	-	-
ENSOMET00000013977	-	522	-	ENSOMEP00000022737	173 (aa)	-	-
ENSOMET00000013939	-	948	-	ENSOMEP00000001568	315 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000002509's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000002509's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000002509	-	83	51.429	ENSOMEG00000015959	-	80	48.205
ENSOMEG00000002509	-	84	94.675	ENSOMEG00000009566	-	85	97.561
ENSOMEG00000002509	-	77	37.500	ENSOMEG00000018558	hnrnpd	91	34.470
ENSOMEG00000002509	-	92	61.714	ENSOMEG00000002091	-	96	56.667
ENSOMEG00000002509	-	90	32.278	ENSOMEG00000000146	msi2a	87	31.541
ENSOMEG00000002509	-	88	64.881	ENSOMEG00000011670	-	96	67.262
ENSOMEG00000002509	-	99	90.308	ENSOMEG00000021030	-	100	90.308
ENSOMEG00000002509	-	72	32.571	ENSOMEG00000023772	hnrnpabb	77	41.558
ENSOMEG00000002509	-	97	32.571	ENSOMEG00000002272	-	74	32.571
ENSOMEG00000002509	-	80	82.857	ENSOMEG00000013637	-	100	69.484
ENSOMEG00000002509	-	99	92.576	ENSOMEG00000023475	-	96	92.576
ENSOMEG00000002509	-	91	36.607	ENSOMEG00000017536	MSI1	66	36.723
ENSOMEG00000002509	-	98	35.294	ENSOMEG00000003120	dazap1	64	35.294
ENSOMEG00000002509	-	100	91.080	ENSOMEG00000006327	-	97	91.080
ENSOMEG00000002509	-	71	34.302	ENSOMEG00000005936	hnrnpaba	71	42.683
ENSOMEG00000002509	-	99	93.450	ENSOMEG00000012368	-	96	93.450
ENSOMEG00000002509	-	54	43.836	ENSOMEG00000021469	cirbpa	78	43.421
ENSOMEG00000002509	-	86	71.681	ENSOMEG00000002084	-	71	83.505
ENSOMEG00000002509	-	52	31.884	ENSOMEG00000007244	hnrnpr	54	30.986
ENSOMEG00000002509	-	99	73.517	ENSOMEG00000002000	-	99	73.517
ENSOMEG00000002509	-	99	90.830	ENSOMEG00000006903	-	95	90.830
ENSOMEG00000002509	-	71	49.425	ENSOMEG00000004838	hnrnpa3	91	48.276

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000002509	-	76	57.222	ENSAOCG00000015914	-	73	52.657	Amphiprion_ocellaris
ENSOMEG00000002509	-	88	66.667	ENSAOCG00000015951	-	96	65.644	Amphiprion_ocellaris
ENSOMEG00000002509	-	76	57.222	ENSAPEG00000002224	-	87	53.110	Amphiprion_percula
ENSOMEG00000002509	-	88	66.667	ENSAPEG00000002274	-	96	65.644	Amphiprion_percula
ENSOMEG00000002509	-	76	57.778	ENSACLG00000008978	-	96	57.297	Astatotilapia_calliptera
ENSOMEG00000002509	-	76	56.667	ENSCVAG00000008324	-	98	49.145	Cyprinodon_variegatus
ENSOMEG00000002509	-	85	45.402	FBgn0004237	Hrb87F	76	43.678	Drosophila_melanogaster
ENSOMEG00000002509	-	78	44.000	FBgn0001215	Hrb98DE	85	37.500	Drosophila_melanogaster
ENSOMEG00000002509	-	71	37.059	ENSEBUG00000010003	-	89	38.323	Eptatretus_burgeri
ENSOMEG00000002509	-	87	57.576	ENSELUG00000014407	-	98	58.434	Esox_lucius
ENSOMEG00000002509	-	76	57.778	ENSHBUG00000023867	-	96	57.297	Haplochromis_burtoni
ENSOMEG00000002509	-	76	55.556	ENSHCOG00000007180	-	100	55.676	Hippocampus_comes
ENSOMEG00000002509	-	88	53.571	ENSLBEG00000006362	-	79	54.762	Labrus_bergylta
ENSOMEG00000002509	-	80	54.839	ENSLOCG00000012121	-	66	55.645	Lepisosteus_oculatus
ENSOMEG00000002509	-	76	56.322	ENSMAMG00000017728	-	79	54.595	Mastacembelus_armatus
ENSOMEG00000002509	-	84	57.778	ENSMZEG00005001063	-	82	57.297	Maylandia_zebra
ENSOMEG00000002509	-	87	62.025	ENSMMOG00000004242	-	98	61.585	Mola_mola
ENSOMEG00000002509	-	88	30.120	ENSMEUG00000003051	-	96	39.683	Notamacropus_eugenii
ENSOMEG00000002509	-	83	57.692	ENSORLG00000030284	-	74	59.398	Oryzias_latipes
ENSOMEG00000002509	-	88	60.914	ENSORLG00000023542	-	96	60.914	Oryzias_latipes
ENSOMEG00000002509	-	88	61.111	ENSORLG00000023176	-	96	60.386	Oryzias_latipes
ENSOMEG00000002509	-	87	62.805	ENSORLG00020007084	-	78	64.242	Oryzias_latipes_hni
ENSOMEG00000002509	-	88	56.471	ENSORLG00020007171	-	96	57.692	Oryzias_latipes_hni
ENSOMEG00000002509	-	98	61.979	ENSORLG00020006029	-	94	61.194	Oryzias_latipes_hni
ENSOMEG00000002509	-	76	56.667	ENSPREG00000010603	-	70	54.106	Poecilia_reticulata
ENSOMEG00000002509	-	76	57.778	ENSPNYG00000020763	-	96	57.297	Pundamilia_nyererei
ENSOMEG00000002509	-	70	56.875	ENSPNAG00000018051	-	79	56.875	Pygocentrus_nattereri
ENSOMEG00000002509	-	71	54.335	ENSSHAG00000015609	-	97	54.335	Sarcophilus_harrisii
ENSOMEG00000002509	-	88	53.571	ENSSDUG00000002394	-	87	54.762	Seriola_dumerili
ENSOMEG00000002509	-	83	65.789	ENSSLDG00000024685	-	85	66.447	Seriola_lalandi_dorsalis