EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000003414 (Gene tree)
Gene ID: 112150901
Gene Symbol: npm1b
Alias: -
Full Name: nucleophosmin-like
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 50544 bases
Position: chrNVQA01000002.1:66885-117428
Accession: 112150901
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000002463	Nucleoplasmin	PF03066.15	1.2e-35	1	1
ENSOMEP00000002452	Nucleoplasmin	PF03066.15	1.3e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000012478	-	4514	-	ENSOMEP00000002452	288 (aa)	XP_024135202	UPI000CF7E356
ENSOMET00000012455	-	2359	-	ENSOMEP00000002463	279 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000003414's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000003414's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000003414	npm1b	94	35.971	ENSOMEG00000007083	npm1a	94	35.315

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000003414	npm1b	100	64.646	ENSAPOG00000004268	npm1b	100	64.646	Acanthochromis_polyacanthus
ENSOMEG00000003414	npm1b	100	66.216	ENSAOCG00000012549	npm1b	100	66.216	Amphiprion_ocellaris
ENSOMEG00000003414	npm1b	100	66.216	ENSAPEG00000000868	npm1b	100	66.554	Amphiprion_percula
ENSOMEG00000003414	npm1b	100	66.221	ENSATEG00000006254	npm1b	100	66.890	Anabas_testudineus
ENSOMEG00000003414	npm1b	97	38.305	ENSACAG00000015626	-	99	38.644	Anolis_carolinensis
ENSOMEG00000003414	npm1b	52	70.548	ENSACLG00000013812	npm1b	69	71.233	Astatotilapia_calliptera
ENSOMEG00000003414	npm1b	95	55.363	ENSAMXG00000042148	npm1b	96	55.290	Astyanax_mexicanus
ENSOMEG00000003414	npm1b	54	38.562	ENSCPBG00000027172	-	81	38.562	Chrysemys_picta_bellii
ENSOMEG00000003414	npm1b	97	38.356	ENSCPBG00000021221	-	57	39.649	Chrysemys_picta_bellii
ENSOMEG00000003414	npm1b	99	62.838	ENSCSEG00000004530	npm1b	100	61.667	Cynoglossus_semilaevis
ENSOMEG00000003414	npm1b	100	64.646	ENSCVAG00000013016	npm1b	100	64.983	Cyprinodon_variegatus
ENSOMEG00000003414	npm1b	100	54.422	ENSDARG00000037675	npm1b	99	56.610	Danio_rerio
ENSOMEG00000003414	npm1b	96	52.982	ENSELUG00000022123	npm1b	96	53.667	Esox_lucius
ENSOMEG00000003414	npm1b	93	39.925	ENSFALG00000003320	-	93	39.209	Ficedula_albicollis
ENSOMEG00000003414	npm1b	100	64.883	ENSFHEG00000020794	npm1b	100	66.890	Fundulus_heteroclitus
ENSOMEG00000003414	npm1b	100	49.488	ENSGMOG00000002689	npm1b	99	52.881	Gadus_morhua
ENSOMEG00000003414	npm1b	94	38.519	ENSGALG00000002197	-	68	39.209	Gallus_gallus
ENSOMEG00000003414	npm1b	100	62.838	ENSGAFG00000017709	npm1b	100	63.851	Gambusia_affinis
ENSOMEG00000003414	npm1b	99	63.571	ENSGACG00000016706	npm1b	99	65.385	Gasterosteus_aculeatus
ENSOMEG00000003414	npm1b	97	38.676	ENSGAGG00000020250	-	94	39.716	Gopherus_agassizii
ENSOMEG00000003414	npm1b	100	61.538	ENSHBUG00000019903	npm1b	95	63.880	Haplochromis_burtoni
ENSOMEG00000003414	npm1b	99	62.373	ENSHCOG00000003895	npm1b	99	63.051	Hippocampus_comes
ENSOMEG00000003414	npm1b	95	55.017	ENSIPUG00000020165	npm1b	96	55.862	Ictalurus_punctatus
ENSOMEG00000003414	npm1b	99	65.529	ENSKMAG00000008260	npm1b	99	68.707	Kryptolebias_marmoratus
ENSOMEG00000003414	npm1b	50	76.429	ENSLBEG00000001304	-	92	69.730	Labrus_bergylta
ENSOMEG00000003414	npm1b	94	40.273	ENSLACG00000001779	-	100	39.931	Latimeria_chalumnae
ENSOMEG00000003414	npm1b	92	39.726	ENSLOCG00000001942	npm1b	99	40.411	Lepisosteus_oculatus
ENSOMEG00000003414	npm1b	71	62.100	ENSMAMG00000015335	npm1b	100	63.014	Mastacembelus_armatus
ENSOMEG00000003414	npm1b	92	37.358	ENSMGAG00000001591	-	99	38.462	Meleagris_gallopavo
ENSOMEG00000003414	npm1b	81	64.050	ENSMALG00000015383	npm1b	100	67.769	Monopterus_albus
ENSOMEG00000003414	npm1b	52	71.918	ENSNBRG00000014133	npm1b	79	71.918	Neolamprologus_brichardi
ENSOMEG00000003414	npm1b	99	60.410	ENSONIG00000001397	npm1b	98	62.457	Oreochromis_niloticus
ENSOMEG00000003414	npm1b	99	50.333	ENSPKIG00000020050	npm1b	98	51.475	Paramormyrops_kingsleyae
ENSOMEG00000003414	npm1b	94	38.909	ENSPSIG00000011204	-	92	38.676	Pelodiscus_sinensis
ENSOMEG00000003414	npm1b	93	35.789	ENSPMAG00000004930	npm1b	99	35.154	Petromyzon_marinus
ENSOMEG00000003414	npm1b	100	62.626	ENSPFOG00000018357	npm1b	100	63.300	Poecilia_formosa
ENSOMEG00000003414	npm1b	52	70.548	ENSPNYG00000001427	npm1b	69	71.233	Pundamilia_nyererei
ENSOMEG00000003414	npm1b	98	57.191	ENSPNAG00000005498	npm1b	99	56.187	Pygocentrus_nattereri
ENSOMEG00000003414	npm1b	96	50.175	ENSSFOG00015005064	npm1b	97	49.826	Scleropages_formosus
ENSOMEG00000003414	npm1b	100	65.878	ENSSMAG00000008088	npm1b	100	66.554	Scophthalmus_maximus
ENSOMEG00000003414	npm1b	100	69.128	ENSSDUG00000007726	npm1b	100	69.128	Seriola_dumerili
ENSOMEG00000003414	npm1b	100	69.128	ENSSLDG00000021396	npm1b	100	69.128	Seriola_lalandi_dorsalis
ENSOMEG00000003414	npm1b	100	65.993	ENSSPAG00000011152	npm1b	100	66.330	Stegastes_partitus
ENSOMEG00000003414	npm1b	92	39.850	ENSTGUG00000014970	-	99	38.909	Taeniopygia_guttata
ENSOMEG00000003414	npm1b	100	62.373	ENSTRUG00000008105	npm1b	95	62.585	Takifugu_rubripes
ENSOMEG00000003414	npm1b	100	60.351	ENSTNIG00000013057	npm1b	99	61.301	Tetraodon_nigroviridis
ENSOMEG00000003414	npm1b	97	38.644	ENSXETG00000008403	npm1	96	37.457	Xenopus_tropicalis
ENSOMEG00000003414	npm1b	100	60.943	ENSXMAG00000001986	npm1b	100	63.300	Xiphophorus_maculatus