EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOMEG00000003606 (Gene tree)
Gene ID: 112150409
Gene Symbol: lsm4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 3399 bases
Position: chrNVQA01000014.1:9829572-9832970
Accession: 112150409
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000002654	LSM	PF01423.22	1.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000012126	-	2109	-	ENSOMEP00000002654	144 (aa)	XP_024134497	UPI000CF8364C

Gene Model

Click here to download ENSOMEG00000003606's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000003606's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOMEG00000003606	lsm4	68	34.314	ENSOMEG00000002892	si:ch73-14h10.2	100	34.314
ENSOMEG00000003606	lsm4	78	32.479	ENSOMEG00000022734	snrpd3l	91	32.031

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000003606	lsm4	61	97.727	ENSG00000130520	LSM4	100	83.453	Homo_sapiens
ENSOMEG00000003606	lsm4	100	88.742	ENSAPOG00000005643	lsm4	100	88.742	Acanthochromis_polyacanthus
ENSOMEG00000003606	lsm4	60	97.701	ENSAMEG00000011162	LSM4	95	82.014	Ailuropoda_melanoleuca
ENSOMEG00000003606	lsm4	100	90.541	ENSAOCG00000006414	lsm4	100	90.541	Amphiprion_ocellaris
ENSOMEG00000003606	lsm4	100	89.933	ENSAPEG00000006238	lsm4	100	89.933	Amphiprion_percula
ENSOMEG00000003606	lsm4	100	87.500	ENSATEG00000016559	lsm4	100	87.500	Anabas_testudineus
ENSOMEG00000003606	lsm4	61	97.727	ENSANAG00000034659	LSM4	100	83.453	Aotus_nancymaae
ENSOMEG00000003606	lsm4	100	91.156	ENSACLG00000022738	lsm4	100	91.156	Astatotilapia_calliptera
ENSOMEG00000003606	lsm4	100	86.897	ENSAMXG00000016932	lsm4	100	86.897	Astyanax_mexicanus
ENSOMEG00000003606	lsm4	61	97.727	ENSBTAG00000008578	LSM4	100	83.453	Bos_taurus
ENSOMEG00000003606	lsm4	58	74.699	WBGene00003078	lsm-4	86	59.677	Caenorhabditis_elegans
ENSOMEG00000003606	lsm4	61	97.727	ENSCJAG00000014171	LSM4	100	83.453	Callithrix_jacchus
ENSOMEG00000003606	lsm4	61	97.727	ENSCAFG00000014900	LSM4	90	83.333	Canis_familiaris
ENSOMEG00000003606	lsm4	61	97.727	ENSCAFG00020012137	LSM4	100	83.453	Canis_lupus_dingo
ENSOMEG00000003606	lsm4	60	97.701	ENSCHIG00000010928	LSM4	91	83.333	Capra_hircus
ENSOMEG00000003606	lsm4	61	96.591	ENSTSYG00000030906	LSM4	100	82.734	Carlito_syrichta
ENSOMEG00000003606	lsm4	61	96.591	ENSCAPG00000014140	LSM4	100	82.734	Cavia_aperea
ENSOMEG00000003606	lsm4	61	96.591	ENSCPOG00000024117	LSM4	100	82.734	Cavia_porcellus
ENSOMEG00000003606	lsm4	61	97.727	ENSCCAG00000036308	LSM4	100	83.453	Cebus_capucinus
ENSOMEG00000003606	lsm4	61	97.727	ENSCATG00000029311	LSM4	100	83.453	Cercocebus_atys
ENSOMEG00000003606	lsm4	61	97.727	ENSCLAG00000010828	LSM4	100	82.014	Chinchilla_lanigera
ENSOMEG00000003606	lsm4	61	97.727	ENSCSAG00000005370	LSM4	100	83.453	Chlorocebus_sabaeus
ENSOMEG00000003606	lsm4	95	82.609	ENSCPBG00000012925	LSM4	100	85.507	Chrysemys_picta_bellii
ENSOMEG00000003606	lsm4	60	94.186	ENSCING00000007519	-	98	73.881	Ciona_intestinalis
ENSOMEG00000003606	lsm4	60	91.860	ENSCSAVG00000008596	-	94	75.000	Ciona_savignyi
ENSOMEG00000003606	lsm4	61	97.727	ENSCANG00000043686	LSM4	100	83.453	Colobus_angolensis_palliatus
ENSOMEG00000003606	lsm4	61	94.318	ENSCGRG00001014436	Lsm4	100	80.576	Cricetulus_griseus_chok1gshd
ENSOMEG00000003606	lsm4	60	94.253	ENSCGRG00000009398	Lsm4	100	80.435	Cricetulus_griseus_crigri
ENSOMEG00000003606	lsm4	100	92.361	ENSCSEG00000016127	lsm4	100	92.361	Cynoglossus_semilaevis
ENSOMEG00000003606	lsm4	90	92.248	ENSCVAG00000021828	lsm4	98	92.248	Cyprinodon_variegatus
ENSOMEG00000003606	lsm4	100	93.056	ENSCVAG00000010601	lsm4	100	93.056	Cyprinodon_variegatus
ENSOMEG00000003606	lsm4	96	84.828	ENSDARG00000023852	lsm4	99	86.897	Danio_rerio
ENSOMEG00000003606	lsm4	61	96.591	ENSDORG00000024225	Lsm4	100	81.295	Dipodomys_ordii
ENSOMEG00000003606	lsm4	69	82.000	FBgn0032240	CG17768	63	82.474	Drosophila_melanogaster
ENSOMEG00000003606	lsm4	51	95.890	ENSETEG00000007762	-	100	80.645	Echinops_telfairi
ENSOMEG00000003606	lsm4	52	93.333	ENSEBUG00000003639	-	84	68.504	Eptatretus_burgeri
ENSOMEG00000003606	lsm4	61	97.727	ENSECAG00000010141	LSM4	57	83.453	Equus_caballus
ENSOMEG00000003606	lsm4	88	92.913	ENSELUG00000012821	lsm4	96	92.913	Esox_lucius
ENSOMEG00000003606	lsm4	61	97.727	ENSFCAG00000040580	LSM4	100	83.453	Felis_catus
ENSOMEG00000003606	lsm4	94	82.482	ENSFALG00000009478	LSM4	99	85.401	Ficedula_albicollis
ENSOMEG00000003606	lsm4	60	97.701	ENSFDAG00000010124	LSM4	100	82.609	Fukomys_damarensis
ENSOMEG00000003606	lsm4	99	80.405	ENSGMOG00000007729	lsm4	99	80.405	Gadus_morhua
ENSOMEG00000003606	lsm4	95	82.609	ENSGALG00000003385	LSM4	100	85.507	Gallus_gallus
ENSOMEG00000003606	lsm4	100	93.750	ENSGAFG00000004903	lsm4	97	91.473	Gambusia_affinis
ENSOMEG00000003606	lsm4	100	82.000	ENSGACG00000008140	lsm4	100	85.333	Gasterosteus_aculeatus
ENSOMEG00000003606	lsm4	95	82.609	ENSGAGG00000017812	LSM4	100	85.507	Gopherus_agassizii
ENSOMEG00000003606	lsm4	61	97.727	ENSGGOG00000012914	-	100	83.453	Gorilla_gorilla
ENSOMEG00000003606	lsm4	100	91.781	ENSHBUG00000008858	lsm4	80	91.781	Haplochromis_burtoni
ENSOMEG00000003606	lsm4	95	75.540	ENSHGLG00000006568	LSM4	100	82.734	Heterocephalus_glaber_female
ENSOMEG00000003606	lsm4	64	97.826	ENSHGLG00100007894	LSM4	99	97.826	Heterocephalus_glaber_male
ENSOMEG00000003606	lsm4	100	93.056	ENSHCOG00000008819	lsm4	100	93.056	Hippocampus_comes
ENSOMEG00000003606	lsm4	100	86.897	ENSIPUG00000005368	Lsm4	100	86.897	Ictalurus_punctatus
ENSOMEG00000003606	lsm4	61	97.727	ENSSTOG00000016494	LSM4	100	83.453	Ictidomys_tridecemlineatus
ENSOMEG00000003606	lsm4	61	95.455	ENSJJAG00000017420	Lsm4	100	82.014	Jaculus_jaculus
ENSOMEG00000003606	lsm4	100	93.750	ENSKMAG00000005073	lsm4	100	93.750	Kryptolebias_marmoratus
ENSOMEG00000003606	lsm4	100	89.262	ENSLBEG00000027930	lsm4	100	89.262	Labrus_bergylta
ENSOMEG00000003606	lsm4	61	98.864	ENSLACG00000015861	LSM4	100	84.286	Latimeria_chalumnae
ENSOMEG00000003606	lsm4	88	89.844	ENSLOCG00000002025	lsm4	100	84.828	Lepisosteus_oculatus
ENSOMEG00000003606	lsm4	60	96.552	ENSLAFG00000017459	LSM4	99	82.609	Loxodonta_africana
ENSOMEG00000003606	lsm4	61	97.727	ENSMFAG00000031194	LSM4	100	83.453	Macaca_fascicularis
ENSOMEG00000003606	lsm4	61	97.727	ENSMMUG00000004405	LSM4	100	83.453	Macaca_mulatta
ENSOMEG00000003606	lsm4	61	97.727	ENSMNEG00000042899	LSM4	100	83.453	Macaca_nemestrina
ENSOMEG00000003606	lsm4	61	97.727	ENSMLEG00000027948	LSM4	100	83.453	Mandrillus_leucophaeus
ENSOMEG00000003606	lsm4	100	93.056	ENSMAMG00000006190	lsm4	100	93.056	Mastacembelus_armatus
ENSOMEG00000003606	lsm4	100	91.781	ENSMZEG00005016420	lsm4	100	91.781	Maylandia_zebra
ENSOMEG00000003606	lsm4	94	76.087	ENSMGAG00000004976	LSM4	99	80.435	Meleagris_gallopavo
ENSOMEG00000003606	lsm4	69	94.949	ENSMICG00000000222	LSM4	100	82.734	Microcebus_murinus
ENSOMEG00000003606	lsm4	61	94.318	ENSMOCG00000020861	Lsm4	100	80.576	Microtus_ochrogaster
ENSOMEG00000003606	lsm4	51	98.630	ENSMODG00000015044	-	100	77.419	Monodelphis_domestica
ENSOMEG00000003606	lsm4	100	90.972	ENSMALG00000018159	lsm4	100	90.972	Monopterus_albus
ENSOMEG00000003606	lsm4	61	94.318	MGP_CAROLIEiJ_G0031158	Lsm4	100	80.576	Mus_caroli
ENSOMEG00000003606	lsm4	61	94.318	ENSMUSG00000031848	Lsm4	96	86.869	Mus_musculus
ENSOMEG00000003606	lsm4	61	94.318	MGP_PahariEiJ_G0021623	Lsm4	100	80.576	Mus_pahari
ENSOMEG00000003606	lsm4	61	94.318	MGP_SPRETEiJ_G0032276	Lsm4	100	80.576	Mus_spretus
ENSOMEG00000003606	lsm4	61	97.727	ENSMPUG00000015589	LSM4	100	83.453	Mustela_putorius_furo
ENSOMEG00000003606	lsm4	60	97.701	ENSMLUG00000004010	LSM4	99	82.609	Myotis_lucifugus
ENSOMEG00000003606	lsm4	61	94.318	ENSNGAG00000008644	Lsm4	100	80.576	Nannospalax_galili
ENSOMEG00000003606	lsm4	75	97.222	ENSNBRG00000022150	lsm4	67	97.222	Neolamprologus_brichardi
ENSOMEG00000003606	lsm4	51	94.521	ENSMEUG00000013229	LSM4	100	72.800	Notamacropus_eugenii
ENSOMEG00000003606	lsm4	53	96.104	ENSOPRG00000005575	LSM4	100	77.236	Ochotona_princeps
ENSOMEG00000003606	lsm4	95	59.712	ENSODEG00000011712	-	100	59.712	Octodon_degus
ENSOMEG00000003606	lsm4	61	87.500	ENSODEG00000004519	-	100	70.290	Octodon_degus
ENSOMEG00000003606	lsm4	61	97.727	ENSODEG00000020549	-	100	82.014	Octodon_degus
ENSOMEG00000003606	lsm4	100	91.156	ENSONIG00000012724	lsm4	100	91.156	Oreochromis_niloticus
ENSOMEG00000003606	lsm4	60	93.407	ENSOANG00000007434	LSM4	97	79.528	Ornithorhynchus_anatinus
ENSOMEG00000003606	lsm4	100	95.833	ENSORLG00000008391	lsm4	100	95.833	Oryzias_latipes
ENSOMEG00000003606	lsm4	100	96.528	ENSORLG00020014829	lsm4	100	96.528	Oryzias_latipes_hni
ENSOMEG00000003606	lsm4	100	95.833	ENSORLG00015010205	lsm4	100	95.833	Oryzias_latipes_hsok
ENSOMEG00000003606	lsm4	68	94.898	ENSOGAG00000027992	LSM4	75	82.114	Otolemur_garnettii
ENSOMEG00000003606	lsm4	60	97.701	ENSOARG00000012553	LSM4	75	82.927	Ovis_aries
ENSOMEG00000003606	lsm4	61	97.727	ENSPPAG00000044045	-	100	83.453	Pan_paniscus
ENSOMEG00000003606	lsm4	61	97.727	ENSPPRG00000018264	LSM4	100	83.453	Panthera_pardus
ENSOMEG00000003606	lsm4	60	97.701	ENSPTIG00000006306	LSM4	100	82.609	Panthera_tigris_altaica
ENSOMEG00000003606	lsm4	61	97.727	ENSPTRG00000031470	LSM4	100	83.453	Pan_troglodytes
ENSOMEG00000003606	lsm4	61	97.727	ENSPANG00000014399	LSM4	100	83.453	Papio_anubis
ENSOMEG00000003606	lsm4	100	86.207	ENSPKIG00000006154	lsm4	100	86.207	Paramormyrops_kingsleyae
ENSOMEG00000003606	lsm4	94	81.752	ENSPSIG00000012358	LSM4	100	84.672	Pelodiscus_sinensis
ENSOMEG00000003606	lsm4	61	94.318	ENSPEMG00000001358	Lsm4	100	80.576	Peromyscus_maniculatus_bairdii
ENSOMEG00000003606	lsm4	100	94.444	ENSPFOG00000000570	lsm4	76	94.444	Poecilia_formosa
ENSOMEG00000003606	lsm4	100	93.750	ENSPLAG00000016267	lsm4	100	93.750	Poecilia_latipinna
ENSOMEG00000003606	lsm4	100	94.444	ENSPMEG00000016378	lsm4	100	94.444	Poecilia_mexicana
ENSOMEG00000003606	lsm4	100	94.444	ENSPREG00000011290	lsm4	76	94.444	Poecilia_reticulata
ENSOMEG00000003606	lsm4	61	97.727	ENSPPYG00000009736	LSM4	100	83.453	Pongo_abelii
ENSOMEG00000003606	lsm4	51	95.890	ENSPCAG00000008513	LSM4	100	80.645	Procavia_capensis
ENSOMEG00000003606	lsm4	69	94.949	ENSPCOG00000019837	LSM4	100	82.734	Propithecus_coquereli
ENSOMEG00000003606	lsm4	61	97.727	ENSPVAG00000015383	LSM4	100	83.453	Pteropus_vampyrus
ENSOMEG00000003606	lsm4	100	91.781	ENSPNYG00000016794	lsm4	100	91.781	Pundamilia_nyererei
ENSOMEG00000003606	lsm4	95	89.051	ENSPNAG00000016598	lsm4	100	89.051	Pygocentrus_nattereri
ENSOMEG00000003606	lsm4	61	94.318	ENSRNOG00000019572	Lsm4	100	80.576	Rattus_norvegicus
ENSOMEG00000003606	lsm4	61	97.727	ENSRBIG00000024717	LSM4	100	83.453	Rhinopithecus_bieti
ENSOMEG00000003606	lsm4	61	97.727	ENSRROG00000045706	LSM4	100	83.453	Rhinopithecus_roxellana
ENSOMEG00000003606	lsm4	58	40.860	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSOMEG00000003606	lsm4	51	97.297	ENSSBOG00000022455	LSM4	100	80.800	Saimiri_boliviensis_boliviensis
ENSOMEG00000003606	lsm4	61	98.864	ENSSHAG00000011559	LSM4	100	84.892	Sarcophilus_harrisii
ENSOMEG00000003606	lsm4	100	87.586	ENSSFOG00015021067	lsm4	100	87.586	Scleropages_formosus
ENSOMEG00000003606	lsm4	100	78.000	ENSSMAG00000021020	lsm4	100	88.667	Scophthalmus_maximus
ENSOMEG00000003606	lsm4	100	80.240	ENSSDUG00000009588	lsm4	100	80.240	Seriola_dumerili
ENSOMEG00000003606	lsm4	100	79.762	ENSSLDG00000006827	lsm4	100	79.762	Seriola_lalandi_dorsalis
ENSOMEG00000003606	lsm4	60	98.851	ENSSPUG00000010166	LSM4	70	82.927	Sphenodon_punctatus
ENSOMEG00000003606	lsm4	100	88.079	ENSSPAG00000011615	lsm4	100	88.742	Stegastes_partitus
ENSOMEG00000003606	lsm4	61	97.727	ENSSSCG00000034314	LSM4	100	83.453	Sus_scrofa
ENSOMEG00000003606	lsm4	100	93.750	ENSTRUG00000021737	lsm4	100	93.750	Takifugu_rubripes
ENSOMEG00000003606	lsm4	100	87.586	ENSTNIG00000010191	lsm4	100	87.586	Tetraodon_nigroviridis
ENSOMEG00000003606	lsm4	61	97.727	ENSUAMG00000000665	LSM4	99	82.609	Ursus_americanus
ENSOMEG00000003606	lsm4	61	97.727	ENSUMAG00000009013	LSM4	100	83.453	Ursus_maritimus
ENSOMEG00000003606	lsm4	60	97.701	ENSVVUG00000008136	LSM4	71	83.333	Vulpes_vulpes
ENSOMEG00000003606	lsm4	68	95.918	ENSXETG00000024933	lsm4	100	84.783	Xenopus_tropicalis
ENSOMEG00000003606	lsm4	100	93.750	ENSXMAG00000026672	lsm4	76	93.750	Xiphophorus_maculatus