EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000003665 (Gene tree)
Gene ID: 112150587
Gene Symbol: upf1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Minus strand
Length: 12606 bases
Position: chrNVQA01000014.1:9804871-9817476
Accession: 112150587
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000023512	UPF1_Zn_bind	PF09416.10	1.8e-74	1	1
ENSOMEP00000023512	ResIII	PF04851.15	3.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000012046	-	3872	XM_024278994	ENSOMEP00000023512	1101 (aa)	XP_024134762	UPI000CF83B49

Gene Model

Click here to download ENSOMEG00000003665's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000003665's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000003665	upf1	100	92.417	ENSG00000005007	UPF1	100	92.507	Homo_sapiens
ENSOMEG00000003665	upf1	100	98.183	ENSAPOG00000010916	-	100	98.183	Acanthochromis_polyacanthus
ENSOMEG00000003665	upf1	100	92.676	ENSAPOG00000023773	upf1	100	93.190	Acanthochromis_polyacanthus
ENSOMEG00000003665	upf1	100	91.925	ENSAMEG00000011474	UPF1	100	92.014	Ailuropoda_melanoleuca
ENSOMEG00000003665	upf1	93	97.371	ENSACIG00000010985	-	100	97.371	Amphilophus_citrinellus
ENSOMEG00000003665	upf1	100	93.291	ENSACIG00000019949	upf1	100	93.484	Amphilophus_citrinellus
ENSOMEG00000003665	upf1	100	98.183	ENSAOCG00000006352	-	100	98.183	Amphiprion_ocellaris
ENSOMEG00000003665	upf1	100	92.189	ENSAOCG00000018519	upf1	100	93.190	Amphiprion_ocellaris
ENSOMEG00000003665	upf1	100	92.189	ENSAPEG00000016344	upf1	100	93.190	Amphiprion_percula
ENSOMEG00000003665	upf1	100	98.093	ENSAPEG00000006292	-	100	98.093	Amphiprion_percula
ENSOMEG00000003665	upf1	100	91.192	ENSATEG00000017867	upf1	100	92.589	Anabas_testudineus
ENSOMEG00000003665	upf1	100	98.093	ENSATEG00000016606	-	100	98.093	Anabas_testudineus
ENSOMEG00000003665	upf1	95	93.655	ENSAPLG00000009175	UPF1	100	93.655	Anas_platyrhynchos
ENSOMEG00000003665	upf1	95	92.308	ENSANAG00000024107	UPF1	95	92.308	Aotus_nancymaae
ENSOMEG00000003665	upf1	100	97.641	ENSACLG00000022630	-	100	97.641	Astatotilapia_calliptera
ENSOMEG00000003665	upf1	100	93.019	ENSACLG00000007181	upf1	100	93.213	Astatotilapia_calliptera
ENSOMEG00000003665	upf1	100	94.651	ENSAMXG00000042187	upf1	100	94.832	Astyanax_mexicanus
ENSOMEG00000003665	upf1	100	91.940	ENSBTAG00000020922	UPF1	100	92.028	Bos_taurus
ENSOMEG00000003665	upf1	81	55.122	WBGene00004880	smg-2	99	49.585	Caenorhabditis_elegans
ENSOMEG00000003665	upf1	100	91.519	ENSCJAG00000019627	UPF1	100	91.608	Callithrix_jacchus
ENSOMEG00000003665	upf1	100	91.696	ENSCAFG00000014578	UPF1	100	91.784	Canis_familiaris
ENSOMEG00000003665	upf1	100	92.596	ENSCAFG00020012347	UPF1	100	92.685	Canis_lupus_dingo
ENSOMEG00000003665	upf1	100	92.844	ENSCHIG00000011018	UPF1	100	92.934	Capra_hircus
ENSOMEG00000003665	upf1	95	93.447	ENSTSYG00000008877	UPF1	98	93.447	Carlito_syrichta
ENSOMEG00000003665	upf1	96	92.582	ENSCAPG00000005758	UPF1	95	93.162	Cavia_aperea
ENSOMEG00000003665	upf1	100	92.453	ENSCPOG00000025463	UPF1	100	92.453	Cavia_porcellus
ENSOMEG00000003665	upf1	100	92.417	ENSCCAG00000032175	UPF1	100	92.507	Cebus_capucinus
ENSOMEG00000003665	upf1	94	93.893	ENSCATG00000040306	UPF1	97	93.893	Cercocebus_atys
ENSOMEG00000003665	upf1	95	93.542	ENSCLAG00000004037	UPF1	99	93.542	Chinchilla_lanigera
ENSOMEG00000003665	upf1	100	92.417	ENSCSAG00000005276	UPF1	100	92.507	Chlorocebus_sabaeus
ENSOMEG00000003665	upf1	100	92.556	ENSCPBG00000012513	UPF1	100	92.556	Chrysemys_picta_bellii
ENSOMEG00000003665	upf1	77	79.015	ENSCING00000021399	-	99	78.195	Ciona_intestinalis
ENSOMEG00000003665	upf1	99	72.646	ENSCSAVG00000006533	-	99	72.825	Ciona_savignyi
ENSOMEG00000003665	upf1	95	93.637	ENSCANG00000029819	UPF1	97	93.637	Colobus_angolensis_palliatus
ENSOMEG00000003665	upf1	100	92.384	ENSCGRG00001021067	Upf1	100	92.473	Cricetulus_griseus_chok1gshd
ENSOMEG00000003665	upf1	95	93.162	ENSCGRG00000013480	Upf1	98	93.162	Cricetulus_griseus_crigri
ENSOMEG00000003665	upf1	100	97.275	ENSCSEG00000016159	-	100	97.275	Cynoglossus_semilaevis
ENSOMEG00000003665	upf1	100	87.489	ENSCSEG00000017239	upf1	100	87.692	Cynoglossus_semilaevis
ENSOMEG00000003665	upf1	100	97.820	ENSCVAG00000010561	upf1	100	97.820	Cyprinodon_variegatus
ENSOMEG00000003665	upf1	100	94.198	ENSDARG00000016302	upf1	100	94.470	Danio_rerio
ENSOMEG00000003665	upf1	95	91.073	ENSDORG00000009984	Upf1	95	91.073	Dipodomys_ordii
ENSOMEG00000003665	upf1	86	71.113	FBgn0030354	Upf1	81	70.747	Drosophila_melanogaster
ENSOMEG00000003665	upf1	54	86.446	ENSEBUG00000010069	upf1	96	86.446	Eptatretus_burgeri
ENSOMEG00000003665	upf1	100	92.755	ENSEASG00005006549	UPF1	100	92.844	Equus_asinus_asinus
ENSOMEG00000003665	upf1	100	92.755	ENSECAG00000010639	UPF1	100	92.844	Equus_caballus
ENSOMEG00000003665	upf1	100	92.238	ENSELUG00000020917	upf1	100	92.148	Esox_lucius
ENSOMEG00000003665	upf1	100	94.770	ENSELUG00000012916	-	100	94.770	Esox_lucius
ENSOMEG00000003665	upf1	100	91.608	ENSFCAG00000009757	UPF1	100	91.696	Felis_catus
ENSOMEG00000003665	upf1	95	94.185	ENSFALG00000009312	UPF1	96	94.185	Ficedula_albicollis
ENSOMEG00000003665	upf1	95	93.447	ENSFDAG00000014816	UPF1	99	93.447	Fukomys_damarensis
ENSOMEG00000003665	upf1	86	98.185	ENSFHEG00000016276	-	96	98.185	Fundulus_heteroclitus
ENSOMEG00000003665	upf1	100	89.714	ENSFHEG00000006428	upf1	100	89.714	Fundulus_heteroclitus
ENSOMEG00000003665	upf1	100	94.160	ENSGMOG00000007541	upf1	100	94.429	Gadus_morhua
ENSOMEG00000003665	upf1	100	92.404	ENSGALG00000003220	UPF1	100	92.404	Gallus_gallus
ENSOMEG00000003665	upf1	64	92.837	ENSGAFG00000015443	-	88	92.329	Gambusia_affinis
ENSOMEG00000003665	upf1	100	97.820	ENSGAFG00000004831	upf1	100	97.820	Gambusia_affinis
ENSOMEG00000003665	upf1	100	92.973	ENSGAGG00000022217	UPF1	100	93.063	Gopherus_agassizii
ENSOMEG00000003665	upf1	95	94.626	ENSGGOG00000002608	UPF1	99	94.626	Gorilla_gorilla
ENSOMEG00000003665	upf1	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSOMEG00000003665	upf1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSOMEG00000003665	upf1	100	91.166	ENSHGLG00000010900	UPF1	100	91.254	Heterocephalus_glaber_female
ENSOMEG00000003665	upf1	95	91.738	ENSHGLG00100005904	UPF1	96	91.738	Heterocephalus_glaber_male
ENSOMEG00000003665	upf1	100	97.368	ENSHCOG00000008918	upf1	100	97.368	Hippocampus_comes
ENSOMEG00000003665	upf1	100	94.651	ENSIPUG00000005108	UPF1	100	94.832	Ictalurus_punctatus
ENSOMEG00000003665	upf1	100	92.328	ENSSTOG00000009196	UPF1	100	92.417	Ictidomys_tridecemlineatus
ENSOMEG00000003665	upf1	100	91.289	ENSJJAG00000023151	Upf1	100	91.378	Jaculus_jaculus
ENSOMEG00000003665	upf1	100	98.093	ENSKMAG00000004962	upf1	100	98.093	Kryptolebias_marmoratus
ENSOMEG00000003665	upf1	100	90.502	ENSLBEG00000014862	upf1	100	92.384	Labrus_bergylta
ENSOMEG00000003665	upf1	100	97.731	ENSLBEG00000027848	-	100	97.731	Labrus_bergylta
ENSOMEG00000003665	upf1	63	94.986	ENSLACG00000008482	UPF1	100	94.986	Latimeria_chalumnae
ENSOMEG00000003665	upf1	100	95.640	ENSLOCG00000002072	upf1	100	95.640	Lepisosteus_oculatus
ENSOMEG00000003665	upf1	100	91.239	ENSLAFG00000014963	UPF1	100	91.327	Loxodonta_africana
ENSOMEG00000003665	upf1	100	92.171	ENSMFAG00000037748	UPF1	100	92.260	Macaca_fascicularis
ENSOMEG00000003665	upf1	100	91.925	ENSMMUG00000023286	UPF1	100	92.014	Macaca_mulatta
ENSOMEG00000003665	upf1	100	92.171	ENSMNEG00000000046	UPF1	100	92.260	Macaca_nemestrina
ENSOMEG00000003665	upf1	95	93.637	ENSMLEG00000028404	UPF1	99	93.637	Mandrillus_leucophaeus
ENSOMEG00000003665	upf1	100	91.860	ENSMAMG00000006229	upf1	100	92.934	Mastacembelus_armatus
ENSOMEG00000003665	upf1	100	98.185	ENSMAMG00000006231	-	100	98.185	Mastacembelus_armatus
ENSOMEG00000003665	upf1	100	92.183	ENSMZEG00005003489	upf1	100	92.992	Maylandia_zebra
ENSOMEG00000003665	upf1	100	97.641	ENSMZEG00005016386	-	100	97.641	Maylandia_zebra
ENSOMEG00000003665	upf1	95	93.169	ENSMGAG00000004745	UPF1	100	93.169	Meleagris_gallopavo
ENSOMEG00000003665	upf1	95	93.162	ENSMAUG00000011398	Upf1	95	93.162	Mesocricetus_auratus
ENSOMEG00000003665	upf1	100	92.328	ENSMICG00000001659	UPF1	100	92.417	Microcebus_murinus
ENSOMEG00000003665	upf1	100	91.482	ENSMOCG00000005699	Upf1	100	91.659	Microtus_ochrogaster
ENSOMEG00000003665	upf1	100	91.916	ENSMMOG00000007881	upf1	100	92.468	Mola_mola
ENSOMEG00000003665	upf1	95	95.598	ENSMMOG00000007537	-	99	95.598	Mola_mola
ENSOMEG00000003665	upf1	100	91.189	ENSMODG00000003689	UPF1	100	91.366	Monodelphis_domestica
ENSOMEG00000003665	upf1	100	92.007	ENSMALG00000000144	upf1	100	92.461	Monopterus_albus
ENSOMEG00000003665	upf1	100	96.018	ENSMALG00000018100	-	100	96.018	Monopterus_albus
ENSOMEG00000003665	upf1	100	92.294	MGP_CAROLIEiJ_G0031142	Upf1	100	92.384	Mus_caroli
ENSOMEG00000003665	upf1	100	92.294	ENSMUSG00000058301	Upf1	100	92.384	Mus_musculus
ENSOMEG00000003665	upf1	100	92.294	MGP_PahariEiJ_G0021607	Upf1	100	92.384	Mus_pahari
ENSOMEG00000003665	upf1	100	92.294	MGP_SPRETEiJ_G0032260	Upf1	100	92.384	Mus_spretus
ENSOMEG00000003665	upf1	100	92.596	ENSMPUG00000015516	UPF1	100	92.685	Mustela_putorius_furo
ENSOMEG00000003665	upf1	99	92.390	ENSMLUG00000012122	UPF1	99	92.480	Myotis_lucifugus
ENSOMEG00000003665	upf1	100	90.973	ENSNGAG00000024107	Upf1	100	91.062	Nannospalax_galili
ENSOMEG00000003665	upf1	100	91.289	ENSNBRG00000000670	upf1	100	91.493	Neolamprologus_brichardi
ENSOMEG00000003665	upf1	100	94.051	ENSNBRG00000022069	-	100	96.699	Neolamprologus_brichardi
ENSOMEG00000003665	upf1	95	87.844	ENSNLEG00000006062	UPF1	99	87.844	Nomascus_leucogenys
ENSOMEG00000003665	upf1	83	88.867	ENSMEUG00000014146	-	83	88.867	Notamacropus_eugenii
ENSOMEG00000003665	upf1	95	87.428	ENSOPRG00000014018	UPF1	99	87.428	Ochotona_princeps
ENSOMEG00000003665	upf1	100	92.626	ENSODEG00000012426	UPF1	100	92.626	Octodon_degus
ENSOMEG00000003665	upf1	100	92.363	ENSONIG00000010452	upf1	100	93.172	Oreochromis_niloticus
ENSOMEG00000003665	upf1	100	97.550	ENSONIG00000012729	-	100	97.550	Oreochromis_niloticus
ENSOMEG00000003665	upf1	100	91.770	ENSOANG00000004568	UPF1	100	91.681	Ornithorhynchus_anatinus
ENSOMEG00000003665	upf1	100	99.364	ENSORLG00000008453	upf1	100	99.364	Oryzias_latipes
ENSOMEG00000003665	upf1	100	99.274	ENSORLG00020014758	upf1	100	99.274	Oryzias_latipes_hni
ENSOMEG00000003665	upf1	100	99.274	ENSORLG00015010165	upf1	100	99.274	Oryzias_latipes_hsok
ENSOMEG00000003665	upf1	100	92.507	ENSOGAG00000012866	UPF1	100	92.596	Otolemur_garnettii
ENSOMEG00000003665	upf1	96	90.809	ENSOARG00000010739	UPF1	100	90.717	Ovis_aries
ENSOMEG00000003665	upf1	95	93.567	ENSPPAG00000043884	UPF1	96	93.567	Pan_paniscus
ENSOMEG00000003665	upf1	100	91.608	ENSPPRG00000023470	UPF1	100	91.696	Panthera_pardus
ENSOMEG00000003665	upf1	95	92.625	ENSPTIG00000010159	UPF1	99	92.625	Panthera_tigris_altaica
ENSOMEG00000003665	upf1	100	92.171	ENSPTRG00000010721	UPF1	100	92.260	Pan_troglodytes
ENSOMEG00000003665	upf1	100	92.171	ENSPANG00000008847	UPF1	100	92.260	Papio_anubis
ENSOMEG00000003665	upf1	92	94.112	ENSPKIG00000006069	upf1	97	94.112	Paramormyrops_kingsleyae
ENSOMEG00000003665	upf1	70	93.611	ENSPSIG00000009491	UPF1	100	93.611	Pelodiscus_sinensis
ENSOMEG00000003665	upf1	100	91.131	ENSPMGG00000017327	upf1	100	91.336	Periophthalmus_magnuspinnatus
ENSOMEG00000003665	upf1	100	91.482	ENSPEMG00000001085	Upf1	100	91.571	Peromyscus_maniculatus_bairdii
ENSOMEG00000003665	upf1	100	87.477	ENSPMAG00000001206	upf1	100	87.477	Petromyzon_marinus
ENSOMEG00000003665	upf1	100	92.589	ENSPCIG00000006156	UPF1	100	92.679	Phascolarctos_cinereus
ENSOMEG00000003665	upf1	100	97.911	ENSPLAG00000016232	-	100	97.911	Poecilia_latipinna
ENSOMEG00000003665	upf1	100	90.925	ENSPLAG00000018155	-	100	90.925	Poecilia_latipinna
ENSOMEG00000003665	upf1	100	97.822	ENSPMEG00000016319	-	100	97.822	Poecilia_mexicana
ENSOMEG00000003665	upf1	100	91.493	ENSPMEG00000011443	-	100	91.493	Poecilia_mexicana
ENSOMEG00000003665	upf1	100	91.211	ENSPREG00000009940	upf1	100	91.211	Poecilia_reticulata
ENSOMEG00000003665	upf1	100	97.639	ENSPREG00000011247	-	100	97.639	Poecilia_reticulata
ENSOMEG00000003665	upf1	100	86.749	ENSPPYG00000009752	UPF1	100	86.837	Pongo_abelii
ENSOMEG00000003665	upf1	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSOMEG00000003665	upf1	100	92.096	ENSPCOG00000023813	UPF1	100	92.185	Propithecus_coquereli
ENSOMEG00000003665	upf1	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSOMEG00000003665	upf1	100	97.641	ENSPNYG00000016731	-	100	97.641	Pundamilia_nyererei
ENSOMEG00000003665	upf1	100	92.183	ENSPNYG00000003694	upf1	100	92.992	Pundamilia_nyererei
ENSOMEG00000003665	upf1	100	94.379	ENSPNAG00000025614	upf1	100	94.560	Pygocentrus_nattereri
ENSOMEG00000003665	upf1	100	92.294	ENSRNOG00000020134	Upf1	100	92.384	Rattus_norvegicus
ENSOMEG00000003665	upf1	95	91.263	ENSRBIG00000013894	UPF1	98	94.863	Rhinopithecus_bieti
ENSOMEG00000003665	upf1	95	93.637	ENSRROG00000040935	UPF1	98	94.863	Rhinopithecus_roxellana
ENSOMEG00000003665	upf1	74	56.793	YMR080C	NAM7	84	56.793	Saccharomyces_cerevisiae
ENSOMEG00000003665	upf1	94	93.893	ENSSBOG00000023632	UPF1	96	93.893	Saimiri_boliviensis_boliviensis
ENSOMEG00000003665	upf1	95	93.460	ENSSHAG00000010499	UPF1	100	93.460	Sarcophilus_harrisii
ENSOMEG00000003665	upf1	100	95.644	ENSSFOG00015021095	upf1	100	95.644	Scleropages_formosus
ENSOMEG00000003665	upf1	100	91.145	ENSSMAG00000005055	upf1	100	92.294	Scophthalmus_maximus
ENSOMEG00000003665	upf1	100	98.094	ENSSMAG00000021018	-	100	98.094	Scophthalmus_maximus
ENSOMEG00000003665	upf1	100	98.276	ENSSDUG00000009629	-	100	98.276	Seriola_dumerili
ENSOMEG00000003665	upf1	100	91.503	ENSSDUG00000013320	upf1	100	92.844	Seriola_dumerili
ENSOMEG00000003665	upf1	100	92.329	ENSSLDG00000020868	upf1	100	93.063	Seriola_lalandi_dorsalis
ENSOMEG00000003665	upf1	100	98.276	ENSSLDG00000006878	-	100	98.276	Seriola_lalandi_dorsalis
ENSOMEG00000003665	upf1	100	92.806	ENSSPUG00000010538	UPF1	100	92.896	Sphenodon_punctatus
ENSOMEG00000003665	upf1	100	91.033	ENSSPAG00000000003	upf1	100	91.123	Stegastes_partitus
ENSOMEG00000003665	upf1	100	98.002	ENSSPAG00000011521	-	100	98.002	Stegastes_partitus
ENSOMEG00000003665	upf1	100	92.755	ENSSSCG00000039301	UPF1	99	94.636	Sus_scrofa
ENSOMEG00000003665	upf1	82	86.489	ENSTGUG00000001057	UPF1	100	90.680	Taeniopygia_guttata
ENSOMEG00000003665	upf1	100	92.196	ENSTRUG00000000150	upf1	100	92.196	Takifugu_rubripes
ENSOMEG00000003665	upf1	100	96.549	ENSTRUG00000005131	-	100	96.549	Takifugu_rubripes
ENSOMEG00000003665	upf1	100	89.088	ENSTTRG00000011544	UPF1	100	89.088	Tursiops_truncatus
ENSOMEG00000003665	upf1	100	92.507	ENSUAMG00000007093	UPF1	100	92.596	Ursus_americanus
ENSOMEG00000003665	upf1	95	94.636	ENSUMAG00000006652	UPF1	99	95.342	Ursus_maritimus
ENSOMEG00000003665	upf1	100	92.596	ENSVVUG00000007797	UPF1	100	92.685	Vulpes_vulpes
ENSOMEG00000003665	upf1	100	79.824	ENSXETG00000013602	upf1	100	79.824	Xenopus_tropicalis
ENSOMEG00000003665	upf1	97	91.259	ENSXCOG00000015275	-	96	91.259	Xiphophorus_couchianus
ENSOMEG00000003665	upf1	94	97.771	ENSXCOG00000005764	-	100	97.771	Xiphophorus_couchianus
ENSOMEG00000003665	upf1	100	91.462	ENSXMAG00000001703	-	100	91.462	Xiphophorus_maculatus
ENSOMEG00000003665	upf1	100	97.641	ENSXMAG00000002540	-	100	97.641	Xiphophorus_maculatus