EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOMEG00000003779 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Oryzias_melastigma
Status: putative
Strand: Plus strand
Length: 1101 bases
Position: chrNVQA01000025.1:8431258-8432358
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOMEP00000002804	RRM_1	PF00076.22	4.8e-15	1	1
ENSOMEP00000002825	RRM_1	PF00076.22	4.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOMET00000011836	-	630	-	ENSOMEP00000002825	209 (aa)	-	-
ENSOMET00000011890	-	657	-	ENSOMEP00000002804	218 (aa)	-	-

Gene Model

Click here to download ENSOMEG00000003779's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOMEG00000003779's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOMEG00000003779	pspc1	96	82.775	ENSG00000121390	PSPC1	53	82.857	Homo_sapiens
ENSOMEG00000003779	pspc1	95	83.654	ENSAPLG00000006246	PSPC1	52	83.333	Anas_platyrhynchos
ENSOMEG00000003779	pspc1	96	82.857	ENSANAG00000000059	PSPC1	54	82.857	Aotus_nancymaae
ENSOMEG00000003779	pspc1	96	82.775	ENSCAFG00020002009	PSPC1	54	82.857	Canis_lupus_dingo
ENSOMEG00000003779	pspc1	96	82.775	ENSCPOG00000000395	PSPC1	54	82.857	Cavia_porcellus
ENSOMEG00000003779	pspc1	96	82.775	ENSCATG00000036434	PSPC1	58	82.857	Cercocebus_atys
ENSOMEG00000003779	pspc1	96	82.775	ENSCANG00000018948	PSPC1	70	82.857	Colobus_angolensis_palliatus
ENSOMEG00000003779	pspc1	96	81.340	ENSDARG00000006621	pspc1	53	81.429	Danio_rerio
ENSOMEG00000003779	pspc1	96	82.775	ENSEASG00005000119	PSPC1	54	82.857	Equus_asinus_asinus
ENSOMEG00000003779	pspc1	96	82.775	ENSECAG00000017286	PSPC1	54	82.857	Equus_caballus
ENSOMEG00000003779	pspc1	95	83.575	ENSELUG00000003746	pspc1	50	83.810	Esox_lucius
ENSOMEG00000003779	pspc1	96	82.775	ENSFCAG00000027841	PSPC1	54	82.857	Felis_catus
ENSOMEG00000003779	pspc1	95	82.609	ENSGACG00000014901	pspc1	59	82.857	Gasterosteus_aculeatus
ENSOMEG00000003779	pspc1	96	82.775	ENSGGOG00000003414	PSPC1	53	82.857	Gorilla_gorilla
ENSOMEG00000003779	pspc1	96	82.775	ENSHGLG00100007962	PSPC1	64	82.775	Heterocephalus_glaber_male
ENSOMEG00000003779	pspc1	96	82.775	ENSSTOG00000026833	PSPC1	53	82.857	Ictidomys_tridecemlineatus
ENSOMEG00000003779	pspc1	96	82.775	ENSMFAG00000032728	PSPC1	59	82.857	Macaca_fascicularis
ENSOMEG00000003779	pspc1	96	82.775	ENSMMUG00000020262	PSPC1	57	82.857	Macaca_mulatta
ENSOMEG00000003779	pspc1	95	83.654	ENSMGAG00000015134	PSPC1	52	83.333	Meleagris_gallopavo
ENSOMEG00000003779	pspc1	96	82.775	ENSMICG00000013970	PSPC1	54	82.857	Microcebus_murinus
ENSOMEG00000003779	pspc1	96	82.775	ENSOANG00000009017	-	53	82.857	Ornithorhynchus_anatinus
ENSOMEG00000003779	pspc1	96	82.775	ENSPPAG00000009836	PSPC1	59	82.857	Pan_paniscus
ENSOMEG00000003779	pspc1	96	82.775	ENSPTRG00000005677	PSPC1	53	82.857	Pan_troglodytes
ENSOMEG00000003779	pspc1	96	82.775	ENSPANG00000001992	PSPC1	58	82.857	Papio_anubis
ENSOMEG00000003779	pspc1	97	81.604	ENSPMGG00000015135	pspc1	59	81.604	Periophthalmus_magnuspinnatus
ENSOMEG00000003779	pspc1	84	47.514	ENSPMAG00000004618	pspc1	56	47.283	Petromyzon_marinus
ENSOMEG00000003779	pspc1	96	82.775	ENSRBIG00000036057	PSPC1	59	82.857	Rhinopithecus_bieti
ENSOMEG00000003779	pspc1	96	82.775	ENSRROG00000036334	PSPC1	53	82.857	Rhinopithecus_roxellana
ENSOMEG00000003779	pspc1	96	82.775	ENSSBOG00000028172	PSPC1	69	82.857	Saimiri_boliviensis_boliviensis
ENSOMEG00000003779	pspc1	95	87.923	ENSSMAG00000001761	pspc1	52	88.095	Scophthalmus_maximus
ENSOMEG00000003779	pspc1	96	82.775	ENSSSCG00000009569	PSPC1	54	82.857	Sus_scrofa
ENSOMEG00000003779	pspc1	96	82.857	ENSUAMG00000012309	PSPC1	60	82.857	Ursus_americanus
ENSOMEG00000003779	pspc1	96	82.775	ENSUMAG00000013993	PSPC1	59	82.857	Ursus_maritimus
ENSOMEG00000003779	pspc1	96	82.775	ENSVPAG00000010029	PSPC1	53	82.857	Vicugna_pacos
ENSOMEG00000003779	pspc1	96	82.775	ENSVVUG00000006414	PSPC1	55	82.857	Vulpes_vulpes
ENSOMEG00000003779	pspc1	95	87.440	ENSXCOG00000017438	pspc1	50	87.619	Xiphophorus_couchianus
ENSOMEG00000003779	pspc1	95	87.923	ENSXMAG00000007929	pspc1	50	88.095	Xiphophorus_maculatus